Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04901

Experiment: amylopectin from maize 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04900 and BACOVA_04901 are separated by 9 nucleotidesBACOVA_04901 and BACOVA_04903 are separated by 177 nucleotidesBACOVA_04903 and BACOVA_04902 overlap by 19 nucleotides BACOVA_04900: BACOVA_04900 - glycosyl hydrolase, family 88, at 299,031 to 300,179 _04900 BACOVA_04901: BACOVA_04901 - Pectinesterase, at 300,189 to 301,160 _04901 BACOVA_04903: BACOVA_04903 - hypothetical protein, at 301,338 to 301,538 _04903 BACOVA_04902: BACOVA_04902 - GDSL-like protein, at 301,520 to 303,268 _04902 Position (kb) 300 301 302Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 299.208 kb on + strand, within BACOVA_04900at 299.253 kb on - strand, within BACOVA_04900at 299.288 kb on + strand, within BACOVA_04900at 299.301 kb on + strand, within BACOVA_04900at 299.346 kb on + strand, within BACOVA_04900at 299.366 kb on + strand, within BACOVA_04900at 299.371 kb on - strand, within BACOVA_04900at 299.394 kb on + strand, within BACOVA_04900at 299.444 kb on + strand, within BACOVA_04900at 299.454 kb on + strand, within BACOVA_04900at 299.484 kb on + strand, within BACOVA_04900at 299.485 kb on - strand, within BACOVA_04900at 299.522 kb on + strand, within BACOVA_04900at 299.551 kb on + strand, within BACOVA_04900at 299.552 kb on - strand, within BACOVA_04900at 299.582 kb on + strand, within BACOVA_04900at 299.582 kb on + strand, within BACOVA_04900at 299.587 kb on - strand, within BACOVA_04900at 299.587 kb on - strand, within BACOVA_04900at 299.626 kb on + strand, within BACOVA_04900at 299.675 kb on + strand, within BACOVA_04900at 299.676 kb on - strand, within BACOVA_04900at 299.676 kb on - strand, within BACOVA_04900at 299.700 kb on + strand, within BACOVA_04900at 299.700 kb on + strand, within BACOVA_04900at 299.772 kb on - strand, within BACOVA_04900at 299.772 kb on - strand, within BACOVA_04900at 299.780 kb on + strand, within BACOVA_04900at 299.785 kb on + strand, within BACOVA_04900at 299.786 kb on - strand, within BACOVA_04900at 299.865 kb on - strand, within BACOVA_04900at 299.892 kb on - strand, within BACOVA_04900at 299.933 kb on + strand, within BACOVA_04900at 299.933 kb on + strand, within BACOVA_04900at 299.934 kb on - strand, within BACOVA_04900at 299.940 kb on - strand, within BACOVA_04900at 299.970 kb on + strand, within BACOVA_04900at 300.065 kb on - strandat 300.081 kb on + strandat 300.081 kb on + strandat 300.081 kb on + strandat 300.082 kb on - strandat 300.091 kb on - strandat 300.092 kb on + strandat 300.092 kb on + strandat 300.140 kb on + strandat 300.149 kb on + strandat 300.160 kb on - strandat 300.201 kb on - strandat 300.255 kb on + strandat 300.286 kb on + strandat 300.287 kb on - strand, within BACOVA_04901at 300.287 kb on - strand, within BACOVA_04901at 300.287 kb on - strand, within BACOVA_04901at 300.364 kb on - strand, within BACOVA_04901at 300.378 kb on + strand, within BACOVA_04901at 300.378 kb on + strand, within BACOVA_04901at 300.394 kb on + strand, within BACOVA_04901at 300.395 kb on - strand, within BACOVA_04901at 300.395 kb on - strand, within BACOVA_04901at 300.396 kb on + strand, within BACOVA_04901at 300.396 kb on + strand, within BACOVA_04901at 300.397 kb on - strand, within BACOVA_04901at 300.397 kb on - strand, within BACOVA_04901at 300.442 kb on + strand, within BACOVA_04901at 300.442 kb on + strand, within BACOVA_04901at 300.443 kb on - strand, within BACOVA_04901at 300.477 kb on + strand, within BACOVA_04901at 300.477 kb on + strand, within BACOVA_04901at 300.477 kb on + strand, within BACOVA_04901at 300.509 kb on + strand, within BACOVA_04901at 300.522 kb on + strand, within BACOVA_04901at 300.523 kb on - strand, within BACOVA_04901at 300.523 kb on - strand, within BACOVA_04901at 300.523 kb on - strand, within BACOVA_04901at 300.524 kb on + strand, within BACOVA_04901at 300.578 kb on + strand, within BACOVA_04901at 300.604 kb on + strand, within BACOVA_04901at 300.671 kb on + strand, within BACOVA_04901at 300.671 kb on + strand, within BACOVA_04901at 300.672 kb on - strand, within BACOVA_04901at 300.672 kb on - strand, within BACOVA_04901at 300.675 kb on + strand, within BACOVA_04901at 300.676 kb on - strand, within BACOVA_04901at 300.732 kb on - strand, within BACOVA_04901at 300.785 kb on + strand, within BACOVA_04901at 300.788 kb on + strand, within BACOVA_04901at 300.801 kb on + strand, within BACOVA_04901at 300.801 kb on + strand, within BACOVA_04901at 300.802 kb on - strand, within BACOVA_04901at 300.843 kb on + strand, within BACOVA_04901at 300.848 kb on - strand, within BACOVA_04901at 300.959 kb on + strand, within BACOVA_04901at 301.092 kb on - strandat 301.107 kb on + strandat 301.108 kb on - strandat 301.108 kb on - strandat 301.152 kb on + strandat 301.152 kb on + strandat 301.153 kb on - strandat 301.164 kb on + strandat 301.186 kb on - strandat 301.276 kb on - strandat 301.339 kb on + strandat 301.373 kb on + strand, within BACOVA_04903at 301.380 kb on - strand, within BACOVA_04903at 301.381 kb on + strand, within BACOVA_04903at 301.384 kb on - strand, within BACOVA_04903at 301.384 kb on - strand, within BACOVA_04903at 301.462 kb on + strand, within BACOVA_04903at 301.540 kb on + strandat 301.540 kb on + strandat 301.547 kb on - strandat 301.554 kb on + strandat 301.619 kb on - strandat 301.695 kb on + strand, within BACOVA_04902at 301.696 kb on - strand, within BACOVA_04902at 301.722 kb on + strand, within BACOVA_04902at 301.723 kb on - strand, within BACOVA_04902at 301.723 kb on - strand, within BACOVA_04902at 301.769 kb on - strand, within BACOVA_04902at 301.820 kb on + strand, within BACOVA_04902at 301.820 kb on + strand, within BACOVA_04902at 301.844 kb on - strand, within BACOVA_04902at 301.964 kb on - strand, within BACOVA_04902at 302.023 kb on + strand, within BACOVA_04902at 302.023 kb on + strand, within BACOVA_04902at 302.085 kb on - strand, within BACOVA_04902

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Per-strain Table

Position Strand Gene LocusTag Fraction amylopectin from maize 2.5 mg/ml (C)
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299,208 + BACOVA_04900 0.15 +0.2
299,253 - BACOVA_04900 0.19 +1.6
299,288 + BACOVA_04900 0.22 -1.0
299,301 + BACOVA_04900 0.23 +1.6
299,346 + BACOVA_04900 0.27 +0.2
299,366 + BACOVA_04900 0.29 +0.2
299,371 - BACOVA_04900 0.30 -0.4
299,394 + BACOVA_04900 0.32 -1.6
299,444 + BACOVA_04900 0.36 +0.1
299,454 + BACOVA_04900 0.37 -0.6
299,484 + BACOVA_04900 0.39 +0.6
299,485 - BACOVA_04900 0.40 -0.5
299,522 + BACOVA_04900 0.43 -0.4
299,551 + BACOVA_04900 0.45 -1.0
299,552 - BACOVA_04900 0.45 -0.4
299,582 + BACOVA_04900 0.48 +0.9
299,582 + BACOVA_04900 0.48 -0.8
299,587 - BACOVA_04900 0.48 +0.6
299,587 - BACOVA_04900 0.48 +0.6
299,626 + BACOVA_04900 0.52 +0.7
299,675 + BACOVA_04900 0.56 -0.4
299,676 - BACOVA_04900 0.56 +0.2
299,676 - BACOVA_04900 0.56 -0.4
299,700 + BACOVA_04900 0.58 +0.6
299,700 + BACOVA_04900 0.58 +1.4
299,772 - BACOVA_04900 0.64 -2.2
299,772 - BACOVA_04900 0.64 -1.0
299,780 + BACOVA_04900 0.65 -0.7
299,785 + BACOVA_04900 0.66 -2.7
299,786 - BACOVA_04900 0.66 -0.4
299,865 - BACOVA_04900 0.73 -0.4
299,892 - BACOVA_04900 0.75 +0.2
299,933 + BACOVA_04900 0.79 +2.2
299,933 + BACOVA_04900 0.79 -0.8
299,934 - BACOVA_04900 0.79 -0.6
299,940 - BACOVA_04900 0.79 +0.3
299,970 + BACOVA_04900 0.82 -0.1
300,065 - -1.9
300,081 + -1.2
300,081 + +0.2
300,081 + -1.6
300,082 - -0.1
300,091 - -0.9
300,092 + -1.2
300,092 + +0.6
300,140 + -0.5
300,149 + +0.6
300,160 - -0.8
300,201 - +0.6
300,255 + +0.2
300,286 + -1.7
300,287 - BACOVA_04901 0.10 -3.1
300,287 - BACOVA_04901 0.10 +0.3
300,287 - BACOVA_04901 0.10 +0.2
300,364 - BACOVA_04901 0.18 +0.4
300,378 + BACOVA_04901 0.19 -2.6
300,378 + BACOVA_04901 0.19 +2.2
300,394 + BACOVA_04901 0.21 +0.6
300,395 - BACOVA_04901 0.21 -1.5
300,395 - BACOVA_04901 0.21 -0.2
300,396 + BACOVA_04901 0.21 -0.1
300,396 + BACOVA_04901 0.21 +3.4
300,397 - BACOVA_04901 0.21 -0.4
300,397 - BACOVA_04901 0.21 -2.9
300,442 + BACOVA_04901 0.26 -1.2
300,442 + BACOVA_04901 0.26 -0.6
300,443 - BACOVA_04901 0.26 +1.0
300,477 + BACOVA_04901 0.30 -0.7
300,477 + BACOVA_04901 0.30 +0.8
300,477 + BACOVA_04901 0.30 +0.6
300,509 + BACOVA_04901 0.33 -1.1
300,522 + BACOVA_04901 0.34 -1.2
300,523 - BACOVA_04901 0.34 +0.7
300,523 - BACOVA_04901 0.34 -2.1
300,523 - BACOVA_04901 0.34 +0.6
300,524 + BACOVA_04901 0.34 -1.1
300,578 + BACOVA_04901 0.40 -1.8
300,604 + BACOVA_04901 0.43 -1.5
300,671 + BACOVA_04901 0.50 -1.0
300,671 + BACOVA_04901 0.50 +1.2
300,672 - BACOVA_04901 0.50 +2.7
300,672 - BACOVA_04901 0.50 -0.2
300,675 + BACOVA_04901 0.50 -1.7
300,676 - BACOVA_04901 0.50 -1.5
300,732 - BACOVA_04901 0.56 -0.1
300,785 + BACOVA_04901 0.61 +1.9
300,788 + BACOVA_04901 0.62 -1.2
300,801 + BACOVA_04901 0.63 -1.0
300,801 + BACOVA_04901 0.63 -0.8
300,802 - BACOVA_04901 0.63 +0.7
300,843 + BACOVA_04901 0.67 -0.4
300,848 - BACOVA_04901 0.68 +0.6
300,959 + BACOVA_04901 0.79 -1.2
301,092 - +0.6
301,107 + +1.2
301,108 - -2.2
301,108 - +0.6
301,152 + -1.5
301,152 + -0.4
301,153 - -1.1
301,164 + +0.6
301,186 - -0.9
301,276 - -0.2
301,339 + +0.5
301,373 + BACOVA_04903 0.17 +1.0
301,380 - BACOVA_04903 0.21 -0.4
301,381 + BACOVA_04903 0.21 +1.7
301,384 - BACOVA_04903 0.23 -1.5
301,384 - BACOVA_04903 0.23 -0.4
301,462 + BACOVA_04903 0.62 +2.0
301,540 + -0.8
301,540 + -0.6
301,547 - -2.0
301,554 + -0.1
301,619 - -1.1
301,695 + BACOVA_04902 0.10 -2.2
301,696 - BACOVA_04902 0.10 +1.2
301,722 + BACOVA_04902 0.12 +1.2
301,723 - BACOVA_04902 0.12 +1.0
301,723 - BACOVA_04902 0.12 +2.6
301,769 - BACOVA_04902 0.14 -0.2
301,820 + BACOVA_04902 0.17 -1.0
301,820 + BACOVA_04902 0.17 +0.2
301,844 - BACOVA_04902 0.19 -1.1
301,964 - BACOVA_04902 0.25 -0.0
302,023 + BACOVA_04902 0.29 -1.1
302,023 + BACOVA_04902 0.29 -0.1
302,085 - BACOVA_04902 0.32 -1.9

Or see this region's nucleotide sequence