Experiment: amylopectin from maize 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04692 and BACOVA_04693 overlap by 17 nucleotides BACOVA_04693 and BACOVA_04694 are separated by 88 nucleotides BACOVA_04694 and BACOVA_04695 overlap by 26 nucleotides
BACOVA_04692: BACOVA_04692 - hypothetical protein, at 60,185 to 60,775
_04692
BACOVA_04693: BACOVA_04693 - hypothetical protein, at 60,759 to 61,610
_04693
BACOVA_04694: BACOVA_04694 - hypothetical protein, at 61,699 to 61,854
_04694
BACOVA_04695: BACOVA_04695 - putative plasmid recombination enzyme, at 61,829 to 63,286
_04695
Position (kb) 61
62 Strain fitness (log2 ratio) -2
-1
0
1
2 at 60.730 kb on - strand at 60.740 kb on + strand at 60.741 kb on - strand at 60.741 kb on - strand at 60.785 kb on - strand at 60.814 kb on + strand at 60.823 kb on - strand at 60.868 kb on - strand, within BACOVA_04693 at 60.930 kb on + strand, within BACOVA_04693 at 61.091 kb on - strand, within BACOVA_04693 at 61.091 kb on - strand, within BACOVA_04693 at 61.163 kb on - strand, within BACOVA_04693 at 61.163 kb on - strand, within BACOVA_04693 at 61.228 kb on + strand, within BACOVA_04693 at 61.681 kb on + strand at 61.683 kb on + strand at 61.684 kb on - strand at 61.736 kb on + strand, within BACOVA_04694 at 61.936 kb on + strand at 61.942 kb on + strand at 61.952 kb on + strand at 61.952 kb on + strand at 61.952 kb on + strand at 62.005 kb on - strand, within BACOVA_04695 at 62.005 kb on - strand, within BACOVA_04695 at 62.005 kb on - strand, within BACOVA_04695 at 62.053 kb on - strand, within BACOVA_04695 at 62.206 kb on + strand, within BACOVA_04695 at 62.207 kb on - strand, within BACOVA_04695 at 62.213 kb on - strand, within BACOVA_04695 at 62.256 kb on - strand, within BACOVA_04695 at 62.256 kb on - strand, within BACOVA_04695 at 62.277 kb on - strand, within BACOVA_04695 at 62.437 kb on + strand, within BACOVA_04695 at 62.462 kb on - strand, within BACOVA_04695 at 62.493 kb on + strand, within BACOVA_04695 at 62.650 kb on + strand, within BACOVA_04695 at 62.816 kb on - strand, within BACOVA_04695 at 62.829 kb on + strand, within BACOVA_04695 at 62.830 kb on - strand, within BACOVA_04695
Per-strain Table
Position Strand Gene LocusTag Fraction amylopectin from maize 2.5 mg/ml (C) remove 60,730 - -1.7 60,740 + -0.3 60,741 - -1.5 60,741 - +0.4 60,785 - -0.6 60,814 + -0.6 60,823 - +1.5 60,868 - BACOVA_04693 0.13 -0.3 60,930 + BACOVA_04693 0.20 -1.3 61,091 - BACOVA_04693 0.39 -0.2 61,091 - BACOVA_04693 0.39 +1.3 61,163 - BACOVA_04693 0.47 +2.0 61,163 - BACOVA_04693 0.47 -0.7 61,228 + BACOVA_04693 0.55 +0.3 61,681 + -1.6 61,683 + -1.3 61,684 - -1.7 61,736 + BACOVA_04694 0.24 -0.6 61,936 + -0.1 61,942 + +0.7 61,952 + -0.3 61,952 + -1.2 61,952 + +0.3 62,005 - BACOVA_04695 0.12 +1.3 62,005 - BACOVA_04695 0.12 -1.4 62,005 - BACOVA_04695 0.12 +1.8 62,053 - BACOVA_04695 0.15 -1.4 62,206 + BACOVA_04695 0.26 -1.6 62,207 - BACOVA_04695 0.26 -0.5 62,213 - BACOVA_04695 0.26 -0.9 62,256 - BACOVA_04695 0.29 -2.2 62,256 - BACOVA_04695 0.29 +0.4 62,277 - BACOVA_04695 0.31 +0.8 62,437 + BACOVA_04695 0.42 +1.4 62,462 - BACOVA_04695 0.43 -0.6 62,493 + BACOVA_04695 0.46 +0.4 62,650 + BACOVA_04695 0.56 -1.1 62,816 - BACOVA_04695 0.68 -1.2 62,829 + BACOVA_04695 0.69 +0.3 62,830 - BACOVA_04695 0.69 -0.3
Or see this region's nucleotide sequence