Experiment: amylopectin from maize 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04511 and BACOVA_04512 are separated by 105 nucleotides BACOVA_04512 and BACOVA_04513 overlap by 20 nucleotides BACOVA_04513 and BACOVA_04514 are separated by 191 nucleotides
BACOVA_04511: BACOVA_04511 - hypothetical protein, at 451,149 to 451,676
_04511
BACOVA_04512: BACOVA_04512 - hypothetical protein, at 451,782 to 452,111
_04512
BACOVA_04513: BACOVA_04513 - kelch repeat protein, at 452,092 to 453,150
_04513
BACOVA_04514: BACOVA_04514 - hypothetical protein, at 453,342 to 454,667
_04514
Position (kb) 452
453
454 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 451.098 kb on - strand at 451.156 kb on + strand at 451.156 kb on + strand at 451.296 kb on - strand, within BACOVA_04511 at 451.314 kb on - strand, within BACOVA_04511 at 451.319 kb on + strand, within BACOVA_04511 at 451.319 kb on + strand, within BACOVA_04511 at 451.320 kb on - strand, within BACOVA_04511 at 451.348 kb on - strand, within BACOVA_04511 at 451.353 kb on + strand, within BACOVA_04511 at 451.353 kb on + strand, within BACOVA_04511 at 451.358 kb on + strand, within BACOVA_04511 at 451.360 kb on + strand, within BACOVA_04511 at 451.361 kb on - strand, within BACOVA_04511 at 451.381 kb on + strand, within BACOVA_04511 at 451.381 kb on + strand, within BACOVA_04511 at 451.381 kb on + strand, within BACOVA_04511 at 451.382 kb on - strand, within BACOVA_04511 at 451.394 kb on + strand, within BACOVA_04511 at 451.395 kb on - strand, within BACOVA_04511 at 451.432 kb on + strand, within BACOVA_04511 at 451.432 kb on + strand, within BACOVA_04511 at 451.433 kb on - strand, within BACOVA_04511 at 451.433 kb on - strand, within BACOVA_04511 at 451.439 kb on + strand, within BACOVA_04511 at 451.439 kb on + strand, within BACOVA_04511 at 451.439 kb on + strand, within BACOVA_04511 at 451.440 kb on - strand, within BACOVA_04511 at 451.440 kb on - strand, within BACOVA_04511 at 451.442 kb on + strand, within BACOVA_04511 at 451.443 kb on - strand, within BACOVA_04511 at 451.522 kb on - strand, within BACOVA_04511 at 451.617 kb on + strand, within BACOVA_04511 at 451.642 kb on - strand at 451.642 kb on - strand at 451.645 kb on + strand at 451.685 kb on + strand at 451.685 kb on + strand at 451.693 kb on + strand at 451.709 kb on - strand at 451.751 kb on - strand at 451.772 kb on + strand at 451.772 kb on + strand at 451.773 kb on - strand at 451.787 kb on - strand at 451.821 kb on + strand, within BACOVA_04512 at 451.860 kb on + strand, within BACOVA_04512 at 451.926 kb on - strand, within BACOVA_04512 at 451.942 kb on - strand, within BACOVA_04512 at 451.942 kb on - strand, within BACOVA_04512 at 452.032 kb on + strand, within BACOVA_04512 at 452.033 kb on - strand, within BACOVA_04512 at 452.038 kb on + strand, within BACOVA_04512 at 452.038 kb on + strand, within BACOVA_04512 at 452.039 kb on - strand, within BACOVA_04512 at 452.039 kb on - strand, within BACOVA_04512 at 452.039 kb on - strand, within BACOVA_04512 at 452.076 kb on - strand, within BACOVA_04512 at 452.078 kb on + strand, within BACOVA_04512 at 452.079 kb on - strand at 452.079 kb on - strand at 452.105 kb on + strand at 452.106 kb on - strand at 452.130 kb on + strand at 452.130 kb on + strand at 452.145 kb on - strand at 452.145 kb on - strand at 452.164 kb on - strand at 452.167 kb on + strand at 452.169 kb on + strand at 452.215 kb on - strand, within BACOVA_04513 at 452.270 kb on + strand, within BACOVA_04513 at 452.280 kb on - strand, within BACOVA_04513 at 452.292 kb on - strand, within BACOVA_04513 at 452.292 kb on - strand, within BACOVA_04513 at 452.296 kb on - strand, within BACOVA_04513 at 452.296 kb on - strand, within BACOVA_04513 at 452.358 kb on - strand, within BACOVA_04513 at 452.370 kb on + strand, within BACOVA_04513 at 452.391 kb on - strand, within BACOVA_04513 at 452.406 kb on + strand, within BACOVA_04513 at 452.504 kb on + strand, within BACOVA_04513 at 452.505 kb on - strand, within BACOVA_04513 at 452.505 kb on - strand, within BACOVA_04513 at 452.509 kb on + strand, within BACOVA_04513 at 452.509 kb on + strand, within BACOVA_04513 at 452.509 kb on + strand, within BACOVA_04513 at 452.509 kb on + strand, within BACOVA_04513 at 452.586 kb on + strand, within BACOVA_04513 at 452.586 kb on + strand, within BACOVA_04513 at 452.628 kb on - strand, within BACOVA_04513 at 452.640 kb on - strand, within BACOVA_04513 at 452.640 kb on - strand, within BACOVA_04513 at 452.687 kb on + strand, within BACOVA_04513 at 452.687 kb on + strand, within BACOVA_04513 at 452.687 kb on + strand, within BACOVA_04513 at 452.687 kb on + strand, within BACOVA_04513 at 452.688 kb on - strand, within BACOVA_04513 at 452.688 kb on - strand, within BACOVA_04513 at 452.688 kb on - strand, within BACOVA_04513 at 452.703 kb on - strand, within BACOVA_04513 at 452.703 kb on - strand, within BACOVA_04513 at 452.703 kb on - strand, within BACOVA_04513 at 452.706 kb on + strand, within BACOVA_04513 at 452.706 kb on + strand, within BACOVA_04513 at 452.706 kb on + strand, within BACOVA_04513 at 452.771 kb on + strand, within BACOVA_04513 at 452.826 kb on + strand, within BACOVA_04513 at 452.827 kb on - strand, within BACOVA_04513 at 452.827 kb on - strand, within BACOVA_04513 at 452.828 kb on + strand, within BACOVA_04513 at 452.843 kb on - strand, within BACOVA_04513 at 452.843 kb on - strand, within BACOVA_04513 at 452.843 kb on - strand, within BACOVA_04513 at 452.856 kb on + strand, within BACOVA_04513 at 452.895 kb on + strand, within BACOVA_04513 at 452.896 kb on - strand, within BACOVA_04513 at 452.896 kb on - strand, within BACOVA_04513 at 452.984 kb on + strand, within BACOVA_04513 at 452.985 kb on - strand, within BACOVA_04513 at 452.989 kb on + strand, within BACOVA_04513 at 452.990 kb on - strand, within BACOVA_04513 at 453.069 kb on + strand at 453.072 kb on - strand at 453.075 kb on - strand at 453.087 kb on + strand at 453.087 kb on + strand at 453.133 kb on - strand at 453.150 kb on + strand at 453.154 kb on + strand at 453.155 kb on - strand at 453.155 kb on - strand at 453.167 kb on - strand at 453.230 kb on + strand at 453.230 kb on + strand at 453.231 kb on - strand at 453.231 kb on - strand at 453.235 kb on - strand at 453.293 kb on - strand at 453.339 kb on + strand at 453.355 kb on + strand at 453.355 kb on + strand at 453.356 kb on - strand at 453.356 kb on - strand at 453.376 kb on + strand at 453.400 kb on + strand at 453.419 kb on - strand at 453.464 kb on + strand at 453.465 kb on - strand at 453.465 kb on - strand at 453.471 kb on - strand at 453.478 kb on + strand, within BACOVA_04514 at 453.479 kb on - strand, within BACOVA_04514 at 453.485 kb on + strand, within BACOVA_04514 at 453.490 kb on + strand, within BACOVA_04514 at 453.491 kb on - strand, within BACOVA_04514 at 453.493 kb on + strand, within BACOVA_04514 at 453.535 kb on + strand, within BACOVA_04514 at 453.557 kb on - strand, within BACOVA_04514 at 453.569 kb on + strand, within BACOVA_04514 at 453.592 kb on - strand, within BACOVA_04514 at 453.599 kb on - strand, within BACOVA_04514 at 453.599 kb on - strand, within BACOVA_04514 at 453.599 kb on - strand, within BACOVA_04514 at 453.606 kb on + strand, within BACOVA_04514 at 453.630 kb on + strand, within BACOVA_04514 at 453.652 kb on + strand, within BACOVA_04514 at 453.652 kb on + strand, within BACOVA_04514 at 453.653 kb on - strand, within BACOVA_04514 at 453.661 kb on - strand, within BACOVA_04514 at 453.675 kb on + strand, within BACOVA_04514 at 453.676 kb on - strand, within BACOVA_04514 at 453.692 kb on - strand, within BACOVA_04514 at 453.746 kb on + strand, within BACOVA_04514 at 453.757 kb on + strand, within BACOVA_04514 at 453.757 kb on + strand, within BACOVA_04514 at 453.757 kb on + strand, within BACOVA_04514 at 453.758 kb on - strand, within BACOVA_04514 at 453.758 kb on - strand, within BACOVA_04514 at 453.758 kb on - strand, within BACOVA_04514 at 453.760 kb on - strand, within BACOVA_04514 at 453.767 kb on + strand, within BACOVA_04514 at 453.771 kb on - strand, within BACOVA_04514 at 453.781 kb on - strand, within BACOVA_04514 at 453.939 kb on + strand, within BACOVA_04514 at 453.983 kb on + strand, within BACOVA_04514 at 453.984 kb on - strand, within BACOVA_04514 at 454.029 kb on + strand, within BACOVA_04514
Per-strain Table
Position Strand Gene LocusTag Fraction amylopectin from maize 2.5 mg/ml (C) remove 451,098 - +1.2 451,156 + +0.6 451,156 + +0.7 451,296 - BACOVA_04511 0.28 +1.1 451,314 - BACOVA_04511 0.31 -2.0 451,319 + BACOVA_04511 0.32 -0.6 451,319 + BACOVA_04511 0.32 -0.6 451,320 - BACOVA_04511 0.32 +0.5 451,348 - BACOVA_04511 0.38 -0.2 451,353 + BACOVA_04511 0.39 +1.2 451,353 + BACOVA_04511 0.39 +0.6 451,358 + BACOVA_04511 0.40 -2.0 451,360 + BACOVA_04511 0.40 +0.9 451,361 - BACOVA_04511 0.40 -2.0 451,381 + BACOVA_04511 0.44 -1.5 451,381 + BACOVA_04511 0.44 -0.8 451,381 + BACOVA_04511 0.44 -0.5 451,382 - BACOVA_04511 0.44 -0.0 451,394 + BACOVA_04511 0.46 -0.6 451,395 - BACOVA_04511 0.47 -1.6 451,432 + BACOVA_04511 0.54 +0.2 451,432 + BACOVA_04511 0.54 -1.5 451,433 - BACOVA_04511 0.54 -1.1 451,433 - BACOVA_04511 0.54 -1.0 451,439 + BACOVA_04511 0.55 -0.3 451,439 + BACOVA_04511 0.55 -0.8 451,439 + BACOVA_04511 0.55 -0.1 451,440 - BACOVA_04511 0.55 -2.2 451,440 - BACOVA_04511 0.55 +2.2 451,442 + BACOVA_04511 0.55 +0.9 451,443 - BACOVA_04511 0.56 -1.2 451,522 - BACOVA_04511 0.71 -0.6 451,617 + BACOVA_04511 0.89 -0.6 451,642 - +2.2 451,642 - -0.2 451,645 + -1.0 451,685 + -0.8 451,685 + -1.2 451,693 + -1.5 451,709 - -1.7 451,751 - -2.7 451,772 + +2.2 451,772 + -0.4 451,773 - -0.2 451,787 - -0.6 451,821 + BACOVA_04512 0.12 -0.2 451,860 + BACOVA_04512 0.24 -0.6 451,926 - BACOVA_04512 0.44 -1.2 451,942 - BACOVA_04512 0.48 +1.2 451,942 - BACOVA_04512 0.48 -1.8 452,032 + BACOVA_04512 0.76 +1.6 452,033 - BACOVA_04512 0.76 +1.2 452,038 + BACOVA_04512 0.78 +0.2 452,038 + BACOVA_04512 0.78 -1.0 452,039 - BACOVA_04512 0.78 +0.2 452,039 - BACOVA_04512 0.78 -0.4 452,039 - BACOVA_04512 0.78 -2.2 452,076 - BACOVA_04512 0.89 -0.6 452,078 + BACOVA_04512 0.90 +0.2 452,079 - -0.3 452,079 - -0.2 452,105 + +0.2 452,106 - -1.5 452,130 + +2.2 452,130 + -0.5 452,145 - +0.2 452,145 - +1.9 452,164 - -1.3 452,167 + -1.6 452,169 + -0.7 452,215 - BACOVA_04513 0.12 +2.2 452,270 + BACOVA_04513 0.17 +1.0 452,280 - BACOVA_04513 0.18 -0.8 452,292 - BACOVA_04513 0.19 -0.8 452,292 - BACOVA_04513 0.19 -1.3 452,296 - BACOVA_04513 0.19 -1.0 452,296 - BACOVA_04513 0.19 +2.2 452,358 - BACOVA_04513 0.25 +2.0 452,370 + BACOVA_04513 0.26 -1.0 452,391 - BACOVA_04513 0.28 -1.5 452,406 + BACOVA_04513 0.30 -0.6 452,504 + BACOVA_04513 0.39 -1.4 452,505 - BACOVA_04513 0.39 +0.7 452,505 - BACOVA_04513 0.39 -1.1 452,509 + BACOVA_04513 0.39 -0.7 452,509 + BACOVA_04513 0.39 -0.3 452,509 + BACOVA_04513 0.39 +2.2 452,509 + BACOVA_04513 0.39 -1.5 452,586 + BACOVA_04513 0.47 +0.6 452,586 + BACOVA_04513 0.47 -1.7 452,628 - BACOVA_04513 0.51 -1.6 452,640 - BACOVA_04513 0.52 -1.3 452,640 - BACOVA_04513 0.52 +0.2 452,687 + BACOVA_04513 0.56 +0.8 452,687 + BACOVA_04513 0.56 -0.6 452,687 + BACOVA_04513 0.56 +0.2 452,687 + BACOVA_04513 0.56 +1.2 452,688 - BACOVA_04513 0.56 -0.0 452,688 - BACOVA_04513 0.56 +1.2 452,688 - BACOVA_04513 0.56 -2.5 452,703 - BACOVA_04513 0.58 -0.6 452,703 - BACOVA_04513 0.58 -0.4 452,703 - BACOVA_04513 0.58 +2.4 452,706 + BACOVA_04513 0.58 +0.2 452,706 + BACOVA_04513 0.58 -2.5 452,706 + BACOVA_04513 0.58 -2.5 452,771 + BACOVA_04513 0.64 -0.6 452,826 + BACOVA_04513 0.69 -0.2 452,827 - BACOVA_04513 0.69 +3.0 452,827 - BACOVA_04513 0.69 +0.4 452,828 + BACOVA_04513 0.69 -1.2 452,843 - BACOVA_04513 0.71 -1.5 452,843 - BACOVA_04513 0.71 -0.6 452,843 - BACOVA_04513 0.71 -1.8 452,856 + BACOVA_04513 0.72 -0.0 452,895 + BACOVA_04513 0.76 -0.6 452,896 - BACOVA_04513 0.76 +1.1 452,896 - BACOVA_04513 0.76 -1.6 452,984 + BACOVA_04513 0.84 -1.8 452,985 - BACOVA_04513 0.84 -2.4 452,989 + BACOVA_04513 0.85 -2.4 452,990 - BACOVA_04513 0.85 -0.5 453,069 + -1.9 453,072 - -0.4 453,075 - +0.2 453,087 + -0.0 453,087 + -1.8 453,133 - +0.6 453,150 + +0.9 453,154 + -3.3 453,155 - +1.7 453,155 - -1.2 453,167 - +1.2 453,230 + +0.6 453,230 + +1.2 453,231 - -2.2 453,231 - -2.0 453,235 - +0.2 453,293 - +0.5 453,339 + -0.3 453,355 + -2.2 453,355 + +0.9 453,356 - -1.3 453,356 - -1.5 453,376 + -0.3 453,400 + -0.2 453,419 - -1.4 453,464 + +0.4 453,465 - -1.0 453,465 - +1.3 453,471 - -0.6 453,478 + BACOVA_04514 0.10 +0.2 453,479 - BACOVA_04514 0.10 -2.2 453,485 + BACOVA_04514 0.11 -0.9 453,490 + BACOVA_04514 0.11 -1.3 453,491 - BACOVA_04514 0.11 +0.4 453,493 + BACOVA_04514 0.11 -0.4 453,535 + BACOVA_04514 0.15 -0.4 453,557 - BACOVA_04514 0.16 -4.3 453,569 + BACOVA_04514 0.17 +1.4 453,592 - BACOVA_04514 0.19 +0.6 453,599 - BACOVA_04514 0.19 +0.6 453,599 - BACOVA_04514 0.19 +1.2 453,599 - BACOVA_04514 0.19 +0.4 453,606 + BACOVA_04514 0.20 -0.1 453,630 + BACOVA_04514 0.22 -0.1 453,652 + BACOVA_04514 0.23 +3.4 453,652 + BACOVA_04514 0.23 -1.5 453,653 - BACOVA_04514 0.23 -2.0 453,661 - BACOVA_04514 0.24 -2.4 453,675 + BACOVA_04514 0.25 -0.5 453,676 - BACOVA_04514 0.25 -1.2 453,692 - BACOVA_04514 0.26 +0.6 453,746 + BACOVA_04514 0.30 -0.2 453,757 + BACOVA_04514 0.31 +1.2 453,757 + BACOVA_04514 0.31 -0.6 453,757 + BACOVA_04514 0.31 +1.3 453,758 - BACOVA_04514 0.31 +1.0 453,758 - BACOVA_04514 0.31 -1.2 453,758 - BACOVA_04514 0.31 -2.2 453,760 - BACOVA_04514 0.32 -3.0 453,767 + BACOVA_04514 0.32 -1.5 453,771 - BACOVA_04514 0.32 +0.2 453,781 - BACOVA_04514 0.33 +0.6 453,939 + BACOVA_04514 0.45 -0.4 453,983 + BACOVA_04514 0.48 -2.0 453,984 - BACOVA_04514 0.48 +0.8 454,029 + BACOVA_04514 0.52 -1.5
Or see this region's nucleotide sequence