Experiment: amylopectin from maize 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04182 and BACOVA_04183 are separated by 119 nucleotides BACOVA_04183 and BACOVA_04184 overlap by 4 nucleotides BACOVA_04184 and BACOVA_04185 overlap by 14 nucleotides
BACOVA_04182: BACOVA_04182 - PKD domain protein, at 55,355 to 56,926
_04182
BACOVA_04183: BACOVA_04183 - hypothetical protein, at 57,046 to 57,228
_04183
BACOVA_04184: BACOVA_04184 - BNR/Asp-box repeat protein, at 57,225 to 58,385
_04184
BACOVA_04185: BACOVA_04185 - SusD family protein, at 58,372 to 59,826
_04185
Position (kb) 57
58
59 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 56.261 kb on + strand, within BACOVA_04182 at 56.272 kb on + strand, within BACOVA_04182 at 56.272 kb on + strand, within BACOVA_04182 at 56.274 kb on + strand, within BACOVA_04182 at 56.274 kb on + strand, within BACOVA_04182 at 56.275 kb on - strand, within BACOVA_04182 at 56.287 kb on - strand, within BACOVA_04182 at 56.287 kb on - strand, within BACOVA_04182 at 56.347 kb on + strand, within BACOVA_04182 at 56.350 kb on - strand, within BACOVA_04182 at 56.360 kb on + strand, within BACOVA_04182 at 56.401 kb on + strand, within BACOVA_04182 at 56.407 kb on + strand, within BACOVA_04182 at 56.455 kb on + strand, within BACOVA_04182 at 56.516 kb on - strand, within BACOVA_04182 at 56.536 kb on + strand, within BACOVA_04182 at 56.540 kb on - strand, within BACOVA_04182 at 56.540 kb on - strand, within BACOVA_04182 at 56.557 kb on + strand, within BACOVA_04182 at 56.558 kb on - strand, within BACOVA_04182 at 56.585 kb on + strand, within BACOVA_04182 at 56.586 kb on - strand, within BACOVA_04182 at 56.609 kb on - strand, within BACOVA_04182 at 56.611 kb on + strand, within BACOVA_04182 at 56.611 kb on + strand, within BACOVA_04182 at 56.611 kb on + strand, within BACOVA_04182 at 56.611 kb on + strand, within BACOVA_04182 at 56.611 kb on + strand, within BACOVA_04182 at 56.611 kb on + strand, within BACOVA_04182 at 56.611 kb on + strand, within BACOVA_04182 at 56.611 kb on + strand, within BACOVA_04182 at 56.640 kb on + strand, within BACOVA_04182 at 56.687 kb on - strand, within BACOVA_04182 at 56.691 kb on + strand, within BACOVA_04182 at 56.691 kb on + strand, within BACOVA_04182 at 56.712 kb on - strand, within BACOVA_04182 at 56.759 kb on - strand, within BACOVA_04182 at 56.774 kb on - strand at 56.774 kb on - strand at 56.777 kb on - strand at 56.843 kb on + strand at 56.879 kb on + strand at 56.879 kb on + strand at 56.879 kb on + strand at 56.883 kb on - strand at 56.935 kb on + strand at 56.936 kb on - strand at 56.936 kb on - strand at 57.047 kb on + strand at 57.048 kb on - strand at 57.075 kb on + strand, within BACOVA_04183 at 57.077 kb on + strand, within BACOVA_04183 at 57.077 kb on + strand, within BACOVA_04183 at 57.077 kb on + strand, within BACOVA_04183 at 57.077 kb on + strand, within BACOVA_04183 at 57.077 kb on + strand, within BACOVA_04183 at 57.079 kb on + strand, within BACOVA_04183 at 57.080 kb on - strand, within BACOVA_04183 at 57.080 kb on - strand, within BACOVA_04183 at 57.080 kb on - strand, within BACOVA_04183 at 57.086 kb on + strand, within BACOVA_04183 at 57.111 kb on + strand, within BACOVA_04183 at 57.128 kb on - strand, within BACOVA_04183 at 57.136 kb on - strand, within BACOVA_04183 at 57.136 kb on - strand, within BACOVA_04183 at 57.136 kb on - strand, within BACOVA_04183 at 57.139 kb on + strand, within BACOVA_04183 at 57.148 kb on + strand, within BACOVA_04183 at 57.154 kb on + strand, within BACOVA_04183 at 57.208 kb on + strand, within BACOVA_04183 at 57.212 kb on + strand at 57.212 kb on + strand at 57.212 kb on + strand at 57.213 kb on - strand at 57.213 kb on - strand at 57.296 kb on - strand at 57.297 kb on + strand at 57.298 kb on - strand at 57.298 kb on - strand at 57.300 kb on - strand at 57.358 kb on + strand, within BACOVA_04184 at 57.365 kb on + strand, within BACOVA_04184 at 57.366 kb on - strand, within BACOVA_04184 at 57.407 kb on + strand, within BACOVA_04184 at 57.411 kb on - strand, within BACOVA_04184 at 57.416 kb on + strand, within BACOVA_04184 at 57.419 kb on + strand, within BACOVA_04184 at 57.420 kb on - strand, within BACOVA_04184 at 57.423 kb on - strand, within BACOVA_04184 at 57.423 kb on - strand, within BACOVA_04184 at 57.468 kb on + strand, within BACOVA_04184 at 57.469 kb on - strand, within BACOVA_04184 at 57.474 kb on + strand, within BACOVA_04184 at 57.475 kb on - strand, within BACOVA_04184 at 57.477 kb on + strand, within BACOVA_04184 at 57.477 kb on + strand, within BACOVA_04184 at 57.480 kb on - strand, within BACOVA_04184 at 57.482 kb on + strand, within BACOVA_04184 at 57.483 kb on - strand, within BACOVA_04184 at 57.494 kb on + strand, within BACOVA_04184 at 57.537 kb on + strand, within BACOVA_04184 at 57.537 kb on + strand, within BACOVA_04184 at 57.539 kb on + strand, within BACOVA_04184 at 57.539 kb on + strand, within BACOVA_04184 at 57.540 kb on - strand, within BACOVA_04184 at 57.540 kb on - strand, within BACOVA_04184 at 57.554 kb on + strand, within BACOVA_04184 at 57.557 kb on + strand, within BACOVA_04184 at 57.603 kb on + strand, within BACOVA_04184 at 57.603 kb on + strand, within BACOVA_04184 at 57.603 kb on + strand, within BACOVA_04184 at 57.700 kb on + strand, within BACOVA_04184 at 57.704 kb on + strand, within BACOVA_04184 at 57.704 kb on + strand, within BACOVA_04184 at 57.723 kb on + strand, within BACOVA_04184 at 57.743 kb on + strand, within BACOVA_04184 at 57.747 kb on - strand, within BACOVA_04184 at 57.751 kb on + strand, within BACOVA_04184 at 57.752 kb on - strand, within BACOVA_04184 at 57.765 kb on + strand, within BACOVA_04184 at 57.901 kb on + strand, within BACOVA_04184 at 57.906 kb on - strand, within BACOVA_04184 at 57.907 kb on + strand, within BACOVA_04184 at 57.908 kb on - strand, within BACOVA_04184 at 57.910 kb on + strand, within BACOVA_04184 at 57.910 kb on + strand, within BACOVA_04184 at 57.998 kb on + strand, within BACOVA_04184 at 58.062 kb on + strand, within BACOVA_04184 at 58.071 kb on - strand, within BACOVA_04184 at 58.116 kb on + strand, within BACOVA_04184 at 58.117 kb on - strand, within BACOVA_04184 at 58.171 kb on - strand, within BACOVA_04184 at 58.175 kb on + strand, within BACOVA_04184 at 58.176 kb on - strand, within BACOVA_04184 at 58.178 kb on + strand, within BACOVA_04184 at 58.203 kb on + strand, within BACOVA_04184 at 58.204 kb on - strand, within BACOVA_04184 at 58.208 kb on + strand, within BACOVA_04184 at 58.208 kb on + strand, within BACOVA_04184 at 58.209 kb on - strand, within BACOVA_04184 at 58.219 kb on + strand, within BACOVA_04184 at 58.239 kb on - strand, within BACOVA_04184 at 58.240 kb on + strand, within BACOVA_04184 at 58.240 kb on + strand, within BACOVA_04184 at 58.241 kb on - strand, within BACOVA_04184 at 58.246 kb on + strand, within BACOVA_04184 at 58.247 kb on - strand, within BACOVA_04184 at 58.299 kb on - strand at 58.338 kb on + strand at 58.356 kb on + strand at 58.356 kb on + strand at 58.357 kb on - strand at 58.358 kb on + strand at 58.358 kb on + strand at 58.358 kb on + strand at 58.359 kb on - strand at 58.359 kb on - strand at 58.413 kb on + strand at 58.414 kb on - strand at 58.417 kb on - strand at 58.417 kb on - strand at 58.447 kb on + strand at 58.459 kb on - strand at 58.461 kb on + strand at 58.471 kb on - strand at 58.471 kb on - strand at 58.503 kb on - strand at 58.503 kb on - strand at 58.510 kb on + strand at 58.510 kb on + strand at 58.510 kb on + strand at 58.511 kb on - strand at 58.566 kb on - strand, within BACOVA_04185 at 58.567 kb on + strand, within BACOVA_04185 at 58.567 kb on + strand, within BACOVA_04185 at 58.620 kb on + strand, within BACOVA_04185 at 58.632 kb on - strand, within BACOVA_04185 at 58.632 kb on - strand, within BACOVA_04185 at 58.632 kb on - strand, within BACOVA_04185 at 58.635 kb on + strand, within BACOVA_04185 at 58.636 kb on - strand, within BACOVA_04185 at 58.639 kb on + strand, within BACOVA_04185 at 58.666 kb on + strand, within BACOVA_04185 at 58.706 kb on + strand, within BACOVA_04185 at 58.727 kb on + strand, within BACOVA_04185 at 58.752 kb on + strand, within BACOVA_04185 at 58.767 kb on - strand, within BACOVA_04185 at 58.770 kb on + strand, within BACOVA_04185 at 58.771 kb on - strand, within BACOVA_04185 at 58.842 kb on + strand, within BACOVA_04185 at 58.842 kb on + strand, within BACOVA_04185 at 58.843 kb on - strand, within BACOVA_04185 at 58.852 kb on - strand, within BACOVA_04185 at 58.873 kb on - strand, within BACOVA_04185 at 58.890 kb on - strand, within BACOVA_04185 at 58.926 kb on + strand, within BACOVA_04185 at 58.949 kb on + strand, within BACOVA_04185 at 58.987 kb on + strand, within BACOVA_04185 at 59.014 kb on - strand, within BACOVA_04185 at 59.057 kb on - strand, within BACOVA_04185 at 59.076 kb on + strand, within BACOVA_04185 at 59.076 kb on + strand, within BACOVA_04185 at 59.077 kb on - strand, within BACOVA_04185 at 59.077 kb on - strand, within BACOVA_04185 at 59.079 kb on + strand, within BACOVA_04185 at 59.089 kb on - strand, within BACOVA_04185 at 59.121 kb on + strand, within BACOVA_04185 at 59.122 kb on - strand, within BACOVA_04185 at 59.122 kb on - strand, within BACOVA_04185 at 59.145 kb on + strand, within BACOVA_04185 at 59.219 kb on + strand, within BACOVA_04185 at 59.302 kb on + strand, within BACOVA_04185 at 59.303 kb on - strand, within BACOVA_04185 at 59.342 kb on - strand, within BACOVA_04185 at 59.353 kb on - strand, within BACOVA_04185 at 59.380 kb on + strand, within BACOVA_04185 at 59.381 kb on - strand, within BACOVA_04185 at 59.382 kb on + strand, within BACOVA_04185
Per-strain Table
Position Strand Gene LocusTag Fraction amylopectin from maize 2.5 mg/ml (C) remove 56,261 + BACOVA_04182 0.58 -2.0 56,272 + BACOVA_04182 0.58 -0.8 56,272 + BACOVA_04182 0.58 -0.8 56,274 + BACOVA_04182 0.58 -1.3 56,274 + BACOVA_04182 0.58 -0.8 56,275 - BACOVA_04182 0.59 -0.9 56,287 - BACOVA_04182 0.59 +0.5 56,287 - BACOVA_04182 0.59 -0.2 56,347 + BACOVA_04182 0.63 -1.3 56,350 - BACOVA_04182 0.63 -0.2 56,360 + BACOVA_04182 0.64 +1.7 56,401 + BACOVA_04182 0.67 -1.0 56,407 + BACOVA_04182 0.67 -0.5 56,455 + BACOVA_04182 0.70 +1.5 56,516 - BACOVA_04182 0.74 -1.3 56,536 + BACOVA_04182 0.75 -0.1 56,540 - BACOVA_04182 0.75 -0.5 56,540 - BACOVA_04182 0.75 -0.5 56,557 + BACOVA_04182 0.76 -0.3 56,558 - BACOVA_04182 0.77 +1.2 56,585 + BACOVA_04182 0.78 +1.8 56,586 - BACOVA_04182 0.78 -0.3 56,609 - BACOVA_04182 0.80 +0.8 56,611 + BACOVA_04182 0.80 +0.3 56,611 + BACOVA_04182 0.80 +1.5 56,611 + BACOVA_04182 0.80 -0.2 56,611 + BACOVA_04182 0.80 +0.9 56,611 + BACOVA_04182 0.80 -0.5 56,611 + BACOVA_04182 0.80 +0.1 56,611 + BACOVA_04182 0.80 -2.3 56,611 + BACOVA_04182 0.80 -0.3 56,640 + BACOVA_04182 0.82 +0.5 56,687 - BACOVA_04182 0.85 -1.0 56,691 + BACOVA_04182 0.85 +0.8 56,691 + BACOVA_04182 0.85 +1.0 56,712 - BACOVA_04182 0.86 -0.9 56,759 - BACOVA_04182 0.89 -1.9 56,774 - +2.1 56,774 - +1.0 56,777 - -0.0 56,843 + +0.8 56,879 + +0.5 56,879 + -0.2 56,879 + -0.7 56,883 - -0.9 56,935 + +1.1 56,936 - -1.5 56,936 - -2.3 57,047 + -0.7 57,048 - +0.3 57,075 + BACOVA_04183 0.16 +1.5 57,077 + BACOVA_04183 0.17 -0.2 57,077 + BACOVA_04183 0.17 +1.1 57,077 + BACOVA_04183 0.17 +0.5 57,077 + BACOVA_04183 0.17 +0.8 57,077 + BACOVA_04183 0.17 +0.5 57,079 + BACOVA_04183 0.18 -1.0 57,080 - BACOVA_04183 0.19 +1.1 57,080 - BACOVA_04183 0.19 -0.8 57,080 - BACOVA_04183 0.19 +0.5 57,086 + BACOVA_04183 0.22 +4.1 57,111 + BACOVA_04183 0.36 -2.9 57,128 - BACOVA_04183 0.45 -1.3 57,136 - BACOVA_04183 0.49 +0.5 57,136 - BACOVA_04183 0.49 +0.5 57,136 - BACOVA_04183 0.49 -0.7 57,139 + BACOVA_04183 0.51 +0.4 57,148 + BACOVA_04183 0.56 -1.7 57,154 + BACOVA_04183 0.59 -1.0 57,208 + BACOVA_04183 0.89 -1.9 57,212 + -1.3 57,212 + -1.9 57,212 + +0.4 57,213 - +1.0 57,213 - -0.7 57,296 - -2.0 57,297 + +3.1 57,298 - -0.7 57,298 - -0.5 57,300 - -0.5 57,358 + BACOVA_04184 0.11 +0.7 57,365 + BACOVA_04184 0.12 -2.0 57,366 - BACOVA_04184 0.12 -1.3 57,407 + BACOVA_04184 0.16 -1.0 57,411 - BACOVA_04184 0.16 +0.3 57,416 + BACOVA_04184 0.16 -1.5 57,419 + BACOVA_04184 0.17 -1.9 57,420 - BACOVA_04184 0.17 +0.1 57,423 - BACOVA_04184 0.17 -0.0 57,423 - BACOVA_04184 0.17 -0.5 57,468 + BACOVA_04184 0.21 +1.1 57,469 - BACOVA_04184 0.21 -0.0 57,474 + BACOVA_04184 0.21 +0.5 57,475 - BACOVA_04184 0.22 +0.5 57,477 + BACOVA_04184 0.22 -0.5 57,477 + BACOVA_04184 0.22 -1.6 57,480 - BACOVA_04184 0.22 -1.0 57,482 + BACOVA_04184 0.22 -0.7 57,483 - BACOVA_04184 0.22 +0.8 57,494 + BACOVA_04184 0.23 -0.0 57,537 + BACOVA_04184 0.27 +1.5 57,537 + BACOVA_04184 0.27 +0.2 57,539 + BACOVA_04184 0.27 -2.8 57,539 + BACOVA_04184 0.27 -0.3 57,540 - BACOVA_04184 0.27 +1.1 57,540 - BACOVA_04184 0.27 -0.9 57,554 + BACOVA_04184 0.28 -1.2 57,557 + BACOVA_04184 0.29 +0.3 57,603 + BACOVA_04184 0.33 -3.3 57,603 + BACOVA_04184 0.33 -0.9 57,603 + BACOVA_04184 0.33 -1.7 57,700 + BACOVA_04184 0.41 -1.3 57,704 + BACOVA_04184 0.41 -1.1 57,704 + BACOVA_04184 0.41 +3.3 57,723 + BACOVA_04184 0.43 -1.5 57,743 + BACOVA_04184 0.45 -1.0 57,747 - BACOVA_04184 0.45 +0.9 57,751 + BACOVA_04184 0.45 -0.7 57,752 - BACOVA_04184 0.45 -1.0 57,765 + BACOVA_04184 0.47 -0.6 57,901 + BACOVA_04184 0.58 -1.0 57,906 - BACOVA_04184 0.59 +0.1 57,907 + BACOVA_04184 0.59 -0.7 57,908 - BACOVA_04184 0.59 +1.1 57,910 + BACOVA_04184 0.59 -1.3 57,910 + BACOVA_04184 0.59 -1.8 57,998 + BACOVA_04184 0.67 -0.3 58,062 + BACOVA_04184 0.72 -0.5 58,071 - BACOVA_04184 0.73 -0.2 58,116 + BACOVA_04184 0.77 -1.8 58,117 - BACOVA_04184 0.77 -0.7 58,171 - BACOVA_04184 0.81 -1.3 58,175 + BACOVA_04184 0.82 -1.7 58,176 - BACOVA_04184 0.82 -2.0 58,178 + BACOVA_04184 0.82 +1.5 58,203 + BACOVA_04184 0.84 -0.0 58,204 - BACOVA_04184 0.84 -1.3 58,208 + BACOVA_04184 0.85 -0.9 58,208 + BACOVA_04184 0.85 -0.6 58,209 - BACOVA_04184 0.85 +0.1 58,219 + BACOVA_04184 0.86 +3.1 58,239 - BACOVA_04184 0.87 +0.1 58,240 + BACOVA_04184 0.87 +0.7 58,240 + BACOVA_04184 0.87 -0.3 58,241 - BACOVA_04184 0.88 +1.0 58,246 + BACOVA_04184 0.88 -0.7 58,247 - BACOVA_04184 0.88 -0.3 58,299 - -0.5 58,338 + -0.2 58,356 + -1.3 58,356 + -1.3 58,357 - +1.8 58,358 + -1.7 58,358 + -4.3 58,358 + +0.5 58,359 - +0.1 58,359 - -0.2 58,413 + +2.0 58,414 - -1.3 58,417 - -1.5 58,417 - +2.8 58,447 + +1.3 58,459 - -0.7 58,461 + -1.0 58,471 - -0.1 58,471 - +0.8 58,503 - +1.4 58,503 - +0.1 58,510 + -0.3 58,510 + -1.5 58,510 + +0.5 58,511 - -0.2 58,566 - BACOVA_04185 0.13 +2.1 58,567 + BACOVA_04185 0.13 -1.7 58,567 + BACOVA_04185 0.13 -0.2 58,620 + BACOVA_04185 0.17 +0.1 58,632 - BACOVA_04185 0.18 -0.2 58,632 - BACOVA_04185 0.18 -0.2 58,632 - BACOVA_04185 0.18 -2.7 58,635 + BACOVA_04185 0.18 -1.2 58,636 - BACOVA_04185 0.18 -0.5 58,639 + BACOVA_04185 0.18 -0.5 58,666 + BACOVA_04185 0.20 -1.2 58,706 + BACOVA_04185 0.23 +0.8 58,727 + BACOVA_04185 0.24 -1.2 58,752 + BACOVA_04185 0.26 -0.5 58,767 - BACOVA_04185 0.27 +0.9 58,770 + BACOVA_04185 0.27 -0.1 58,771 - BACOVA_04185 0.27 +0.1 58,842 + BACOVA_04185 0.32 -1.8 58,842 + BACOVA_04185 0.32 -2.0 58,843 - BACOVA_04185 0.32 -1.3 58,852 - BACOVA_04185 0.33 -1.6 58,873 - BACOVA_04185 0.34 -2.1 58,890 - BACOVA_04185 0.36 -0.0 58,926 + BACOVA_04185 0.38 -0.6 58,949 + BACOVA_04185 0.40 -0.4 58,987 + BACOVA_04185 0.42 -0.1 59,014 - BACOVA_04185 0.44 -1.0 59,057 - BACOVA_04185 0.47 -0.4 59,076 + BACOVA_04185 0.48 +0.5 59,076 + BACOVA_04185 0.48 +1.0 59,077 - BACOVA_04185 0.48 -0.6 59,077 - BACOVA_04185 0.48 -0.9 59,079 + BACOVA_04185 0.49 +2.6 59,089 - BACOVA_04185 0.49 +0.1 59,121 + BACOVA_04185 0.51 -0.6 59,122 - BACOVA_04185 0.52 +0.2 59,122 - BACOVA_04185 0.52 +1.8 59,145 + BACOVA_04185 0.53 -1.0 59,219 + BACOVA_04185 0.58 -0.2 59,302 + BACOVA_04185 0.64 -2.0 59,303 - BACOVA_04185 0.64 -0.7 59,342 - BACOVA_04185 0.67 -1.5 59,353 - BACOVA_04185 0.67 +0.5 59,380 + BACOVA_04185 0.69 -0.8 59,381 - BACOVA_04185 0.69 -0.5 59,382 + BACOVA_04185 0.69 -0.9
Or see this region's nucleotide sequence