Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04126

Experiment: amylopectin from maize 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04124 and BACOVA_04125 are separated by 2 nucleotidesBACOVA_04125 and BACOVA_04126 are separated by 3 nucleotidesBACOVA_04126 and BACOVA_04127 are separated by 31 nucleotides BACOVA_04124: BACOVA_04124 - oxidoreductase, short chain dehydrogenase/reductase family protein, at 477,509 to 478,396 _04124 BACOVA_04125: BACOVA_04125 - hypothetical protein, at 478,399 to 478,506 _04125 BACOVA_04126: BACOVA_04126 - Alpha-L-rhamnosidase N-terminal domain protein, at 478,510 to 482,370 _04126 BACOVA_04127: BACOVA_04127 - hypothetical protein, at 482,402 to 483,868 _04127 Position (kb) 478 479 480 481 482 483Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 477.517 kb on + strandat 477.518 kb on - strandat 477.551 kb on - strandat 477.617 kb on - strand, within BACOVA_04124at 477.628 kb on + strand, within BACOVA_04124at 477.682 kb on - strand, within BACOVA_04124at 477.825 kb on + strand, within BACOVA_04124at 477.826 kb on - strand, within BACOVA_04124at 477.859 kb on - strand, within BACOVA_04124at 477.883 kb on + strand, within BACOVA_04124at 477.884 kb on - strand, within BACOVA_04124at 477.918 kb on - strand, within BACOVA_04124at 477.931 kb on + strand, within BACOVA_04124at 477.934 kb on + strand, within BACOVA_04124at 477.960 kb on - strand, within BACOVA_04124at 478.012 kb on + strand, within BACOVA_04124at 478.051 kb on + strand, within BACOVA_04124at 478.051 kb on + strand, within BACOVA_04124at 478.052 kb on - strand, within BACOVA_04124at 478.100 kb on - strand, within BACOVA_04124at 478.143 kb on - strand, within BACOVA_04124at 478.143 kb on - strand, within BACOVA_04124at 478.187 kb on + strand, within BACOVA_04124at 478.188 kb on - strand, within BACOVA_04124at 478.226 kb on - strand, within BACOVA_04124at 478.226 kb on - strand, within BACOVA_04124at 478.230 kb on - strand, within BACOVA_04124at 478.316 kb on - strandat 478.316 kb on - strandat 478.360 kb on - strandat 478.383 kb on + strandat 478.384 kb on - strandat 478.384 kb on - strandat 478.388 kb on - strandat 478.431 kb on - strand, within BACOVA_04125at 478.440 kb on - strand, within BACOVA_04125at 478.440 kb on - strand, within BACOVA_04125at 478.444 kb on - strand, within BACOVA_04125at 478.511 kb on + strandat 478.529 kb on - strandat 478.542 kb on + strandat 478.542 kb on + strandat 478.566 kb on - strandat 478.633 kb on - strandat 478.639 kb on + strandat 478.640 kb on - strandat 478.729 kb on - strandat 478.743 kb on - strandat 478.746 kb on + strandat 478.752 kb on + strandat 478.752 kb on + strandat 478.819 kb on + strandat 478.865 kb on - strandat 478.865 kb on - strandat 478.876 kb on - strandat 478.897 kb on + strand, within BACOVA_04126at 478.912 kb on - strand, within BACOVA_04126at 479.035 kb on + strand, within BACOVA_04126at 479.157 kb on + strand, within BACOVA_04126at 479.158 kb on - strand, within BACOVA_04126at 479.176 kb on - strand, within BACOVA_04126at 479.176 kb on - strand, within BACOVA_04126at 479.178 kb on + strand, within BACOVA_04126at 479.178 kb on + strand, within BACOVA_04126at 479.286 kb on + strand, within BACOVA_04126at 479.287 kb on - strand, within BACOVA_04126at 479.358 kb on + strand, within BACOVA_04126at 479.358 kb on + strand, within BACOVA_04126at 479.358 kb on + strand, within BACOVA_04126at 479.358 kb on + strand, within BACOVA_04126at 479.359 kb on - strand, within BACOVA_04126at 479.359 kb on - strand, within BACOVA_04126at 479.388 kb on + strand, within BACOVA_04126at 479.413 kb on + strand, within BACOVA_04126at 479.414 kb on - strand, within BACOVA_04126at 479.493 kb on + strand, within BACOVA_04126at 479.500 kb on + strand, within BACOVA_04126at 479.578 kb on + strand, within BACOVA_04126at 479.669 kb on - strand, within BACOVA_04126at 479.682 kb on - strand, within BACOVA_04126at 479.726 kb on - strand, within BACOVA_04126at 479.800 kb on + strand, within BACOVA_04126at 479.810 kb on + strand, within BACOVA_04126at 479.878 kb on - strand, within BACOVA_04126at 479.953 kb on - strand, within BACOVA_04126at 480.010 kb on + strand, within BACOVA_04126at 480.021 kb on + strand, within BACOVA_04126at 480.022 kb on - strand, within BACOVA_04126at 480.045 kb on + strand, within BACOVA_04126at 480.045 kb on + strand, within BACOVA_04126at 480.046 kb on - strand, within BACOVA_04126at 480.046 kb on - strand, within BACOVA_04126at 480.046 kb on - strand, within BACOVA_04126at 480.048 kb on - strand, within BACOVA_04126at 480.062 kb on + strand, within BACOVA_04126at 480.082 kb on + strand, within BACOVA_04126at 480.083 kb on - strand, within BACOVA_04126at 480.086 kb on + strand, within BACOVA_04126at 480.087 kb on - strand, within BACOVA_04126at 480.091 kb on + strand, within BACOVA_04126at 480.127 kb on + strand, within BACOVA_04126at 480.157 kb on + strand, within BACOVA_04126at 480.157 kb on + strand, within BACOVA_04126at 480.158 kb on - strand, within BACOVA_04126at 480.158 kb on - strand, within BACOVA_04126at 480.160 kb on - strand, within BACOVA_04126at 480.160 kb on - strand, within BACOVA_04126at 480.177 kb on + strand, within BACOVA_04126at 480.177 kb on + strand, within BACOVA_04126at 480.178 kb on - strand, within BACOVA_04126at 480.178 kb on - strand, within BACOVA_04126at 480.202 kb on - strand, within BACOVA_04126at 480.218 kb on + strand, within BACOVA_04126at 480.218 kb on + strand, within BACOVA_04126at 480.218 kb on + strand, within BACOVA_04126at 480.256 kb on - strand, within BACOVA_04126at 480.277 kb on - strand, within BACOVA_04126at 480.288 kb on + strand, within BACOVA_04126at 480.288 kb on + strand, within BACOVA_04126at 480.291 kb on + strand, within BACOVA_04126at 480.301 kb on + strand, within BACOVA_04126at 480.302 kb on - strand, within BACOVA_04126at 480.302 kb on - strand, within BACOVA_04126at 480.306 kb on + strand, within BACOVA_04126at 480.306 kb on + strand, within BACOVA_04126at 480.306 kb on + strand, within BACOVA_04126at 480.338 kb on - strand, within BACOVA_04126at 480.338 kb on - strand, within BACOVA_04126at 480.451 kb on + strand, within BACOVA_04126at 480.452 kb on - strand, within BACOVA_04126at 480.452 kb on - strand, within BACOVA_04126at 480.452 kb on - strand, within BACOVA_04126at 480.511 kb on - strand, within BACOVA_04126at 480.557 kb on + strand, within BACOVA_04126at 480.576 kb on + strand, within BACOVA_04126at 480.577 kb on - strand, within BACOVA_04126at 480.592 kb on - strand, within BACOVA_04126at 480.592 kb on - strand, within BACOVA_04126at 480.596 kb on + strand, within BACOVA_04126at 480.596 kb on + strand, within BACOVA_04126at 480.635 kb on + strand, within BACOVA_04126at 480.763 kb on - strand, within BACOVA_04126at 480.813 kb on - strand, within BACOVA_04126at 480.813 kb on - strand, within BACOVA_04126at 480.821 kb on + strand, within BACOVA_04126at 480.821 kb on + strand, within BACOVA_04126at 480.861 kb on + strand, within BACOVA_04126at 480.924 kb on - strand, within BACOVA_04126at 480.999 kb on + strand, within BACOVA_04126at 481.019 kb on - strand, within BACOVA_04126at 481.058 kb on + strand, within BACOVA_04126at 481.073 kb on - strand, within BACOVA_04126at 481.077 kb on - strand, within BACOVA_04126at 481.096 kb on - strand, within BACOVA_04126at 481.096 kb on - strand, within BACOVA_04126at 481.096 kb on - strand, within BACOVA_04126at 481.113 kb on + strand, within BACOVA_04126at 481.114 kb on - strand, within BACOVA_04126at 481.145 kb on + strand, within BACOVA_04126at 481.145 kb on + strand, within BACOVA_04126at 481.146 kb on - strand, within BACOVA_04126at 481.146 kb on - strand, within BACOVA_04126at 481.147 kb on + strand, within BACOVA_04126at 481.147 kb on + strand, within BACOVA_04126at 481.147 kb on + strand, within BACOVA_04126at 481.148 kb on - strand, within BACOVA_04126at 481.148 kb on - strand, within BACOVA_04126at 481.301 kb on + strand, within BACOVA_04126at 481.301 kb on + strand, within BACOVA_04126at 481.396 kb on - strand, within BACOVA_04126at 481.433 kb on + strand, within BACOVA_04126at 481.475 kb on + strand, within BACOVA_04126at 481.491 kb on - strand, within BACOVA_04126at 481.497 kb on + strand, within BACOVA_04126at 481.497 kb on + strand, within BACOVA_04126at 481.516 kb on + strand, within BACOVA_04126at 481.521 kb on + strand, within BACOVA_04126at 481.522 kb on - strand, within BACOVA_04126at 481.545 kb on + strand, within BACOVA_04126at 481.574 kb on + strand, within BACOVA_04126at 481.574 kb on + strand, within BACOVA_04126at 481.622 kb on - strand, within BACOVA_04126at 481.627 kb on - strand, within BACOVA_04126at 481.635 kb on + strand, within BACOVA_04126at 481.654 kb on - strand, within BACOVA_04126at 481.656 kb on - strand, within BACOVA_04126at 481.678 kb on + strand, within BACOVA_04126at 481.713 kb on + strand, within BACOVA_04126at 481.721 kb on + strand, within BACOVA_04126at 481.721 kb on + strand, within BACOVA_04126at 481.831 kb on - strand, within BACOVA_04126at 481.835 kb on - strand, within BACOVA_04126at 481.835 kb on - strand, within BACOVA_04126at 482.035 kb on + strandat 482.035 kb on + strandat 482.036 kb on - strandat 482.110 kb on - strandat 482.136 kb on + strandat 482.137 kb on - strandat 482.159 kb on - strandat 482.189 kb on + strandat 482.200 kb on + strandat 482.260 kb on - strandat 482.299 kb on + strandat 482.300 kb on - strandat 482.305 kb on + strandat 482.305 kb on + strandat 482.306 kb on - strandat 482.315 kb on + strandat 482.317 kb on + strandat 482.318 kb on - strandat 482.356 kb on + strandat 482.370 kb on + strandat 482.371 kb on - strandat 482.407 kb on + strandat 482.453 kb on + strandat 482.456 kb on - strandat 482.457 kb on + strandat 482.458 kb on - strandat 482.465 kb on - strandat 482.468 kb on - strandat 482.560 kb on - strand, within BACOVA_04127at 482.569 kb on + strand, within BACOVA_04127at 482.652 kb on + strand, within BACOVA_04127at 482.659 kb on - strand, within BACOVA_04127at 482.659 kb on - strand, within BACOVA_04127at 482.826 kb on + strand, within BACOVA_04127at 482.827 kb on - strand, within BACOVA_04127at 482.847 kb on + strand, within BACOVA_04127at 482.848 kb on - strand, within BACOVA_04127at 482.872 kb on + strand, within BACOVA_04127at 482.899 kb on - strand, within BACOVA_04127at 482.902 kb on + strand, within BACOVA_04127at 483.331 kb on + strand, within BACOVA_04127at 483.346 kb on + strand, within BACOVA_04127at 483.347 kb on - strand, within BACOVA_04127at 483.348 kb on + strand, within BACOVA_04127

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Per-strain Table

Position Strand Gene LocusTag Fraction amylopectin from maize 2.5 mg/ml (C)
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477,517 + -0.5
477,518 - +1.0
477,551 - -1.0
477,617 - BACOVA_04124 0.12 +1.5
477,628 + BACOVA_04124 0.13 -2.0
477,682 - BACOVA_04124 0.19 -0.5
477,825 + BACOVA_04124 0.36 -1.2
477,826 - BACOVA_04124 0.36 -1.0
477,859 - BACOVA_04124 0.39 +1.1
477,883 + BACOVA_04124 0.42 -0.2
477,884 - BACOVA_04124 0.42 -0.3
477,918 - BACOVA_04124 0.46 -1.0
477,931 + BACOVA_04124 0.48 +0.1
477,934 + BACOVA_04124 0.48 -1.7
477,960 - BACOVA_04124 0.51 +1.7
478,012 + BACOVA_04124 0.57 -1.1
478,051 + BACOVA_04124 0.61 -1.1
478,051 + BACOVA_04124 0.61 -1.5
478,052 - BACOVA_04124 0.61 +0.5
478,100 - BACOVA_04124 0.67 +2.1
478,143 - BACOVA_04124 0.71 +2.7
478,143 - BACOVA_04124 0.71 -0.5
478,187 + BACOVA_04124 0.76 +1.1
478,188 - BACOVA_04124 0.76 +1.5
478,226 - BACOVA_04124 0.81 +0.8
478,226 - BACOVA_04124 0.81 -1.4
478,230 - BACOVA_04124 0.81 +2.0
478,316 - +3.7
478,316 - -0.9
478,360 - -0.7
478,383 + +0.7
478,384 - +2.1
478,384 - +0.9
478,388 - +0.5
478,431 - BACOVA_04125 0.30 -0.0
478,440 - BACOVA_04125 0.38 +0.5
478,440 - BACOVA_04125 0.38 -1.5
478,444 - BACOVA_04125 0.42 -1.2
478,511 + -2.0
478,529 - +0.1
478,542 + +1.1
478,542 + +2.7
478,566 - -0.1
478,633 - +0.9
478,639 + +1.0
478,640 - -0.7
478,729 - -2.1
478,743 - +0.7
478,746 + +0.3
478,752 + -1.3
478,752 + -1.2
478,819 + -2.1
478,865 - -0.3
478,865 - -0.6
478,876 - -1.0
478,897 + BACOVA_04126 0.10 -0.2
478,912 - BACOVA_04126 0.10 -1.6
479,035 + BACOVA_04126 0.14 +1.1
479,157 + BACOVA_04126 0.17 -1.5
479,158 - BACOVA_04126 0.17 -0.7
479,176 - BACOVA_04126 0.17 -0.7
479,176 - BACOVA_04126 0.17 +1.1
479,178 + BACOVA_04126 0.17 +0.4
479,178 + BACOVA_04126 0.17 +0.1
479,286 + BACOVA_04126 0.20 +2.9
479,287 - BACOVA_04126 0.20 +2.1
479,358 + BACOVA_04126 0.22 -1.4
479,358 + BACOVA_04126 0.22 +0.1
479,358 + BACOVA_04126 0.22 +0.1
479,358 + BACOVA_04126 0.22 +1.1
479,359 - BACOVA_04126 0.22 +2.8
479,359 - BACOVA_04126 0.22 -1.2
479,388 + BACOVA_04126 0.23 +1.3
479,413 + BACOVA_04126 0.23 -2.3
479,414 - BACOVA_04126 0.23 -2.4
479,493 + BACOVA_04126 0.25 +1.1
479,500 + BACOVA_04126 0.26 +1.1
479,578 + BACOVA_04126 0.28 -1.6
479,669 - BACOVA_04126 0.30 +1.0
479,682 - BACOVA_04126 0.30 +0.1
479,726 - BACOVA_04126 0.31 +0.8
479,800 + BACOVA_04126 0.33 +0.1
479,810 + BACOVA_04126 0.34 +0.3
479,878 - BACOVA_04126 0.35 -0.5
479,953 - BACOVA_04126 0.37 +0.5
480,010 + BACOVA_04126 0.39 +1.6
480,021 + BACOVA_04126 0.39 -1.8
480,022 - BACOVA_04126 0.39 -0.5
480,045 + BACOVA_04126 0.40 -0.5
480,045 + BACOVA_04126 0.40 -0.9
480,046 - BACOVA_04126 0.40 -0.3
480,046 - BACOVA_04126 0.40 +1.1
480,046 - BACOVA_04126 0.40 -0.5
480,048 - BACOVA_04126 0.40 -0.2
480,062 + BACOVA_04126 0.40 -0.2
480,082 + BACOVA_04126 0.41 +0.5
480,083 - BACOVA_04126 0.41 +1.1
480,086 + BACOVA_04126 0.41 -0.3
480,087 - BACOVA_04126 0.41 -1.0
480,091 + BACOVA_04126 0.41 -2.3
480,127 + BACOVA_04126 0.42 -0.2
480,157 + BACOVA_04126 0.43 -2.4
480,157 + BACOVA_04126 0.43 -0.5
480,158 - BACOVA_04126 0.43 +0.8
480,158 - BACOVA_04126 0.43 +0.1
480,160 - BACOVA_04126 0.43 -0.9
480,160 - BACOVA_04126 0.43 -1.5
480,177 + BACOVA_04126 0.43 +0.1
480,177 + BACOVA_04126 0.43 +0.4
480,178 - BACOVA_04126 0.43 +1.5
480,178 - BACOVA_04126 0.43 +1.2
480,202 - BACOVA_04126 0.44 -0.2
480,218 + BACOVA_04126 0.44 -1.9
480,218 + BACOVA_04126 0.44 -0.9
480,218 + BACOVA_04126 0.44 -1.5
480,256 - BACOVA_04126 0.45 +0.5
480,277 - BACOVA_04126 0.46 -0.7
480,288 + BACOVA_04126 0.46 -2.4
480,288 + BACOVA_04126 0.46 -2.2
480,291 + BACOVA_04126 0.46 -1.8
480,301 + BACOVA_04126 0.46 +1.1
480,302 - BACOVA_04126 0.46 -1.2
480,302 - BACOVA_04126 0.46 +1.7
480,306 + BACOVA_04126 0.47 -0.0
480,306 + BACOVA_04126 0.47 +1.5
480,306 + BACOVA_04126 0.47 -1.2
480,338 - BACOVA_04126 0.47 -0.2
480,338 - BACOVA_04126 0.47 -0.5
480,451 + BACOVA_04126 0.50 +2.1
480,452 - BACOVA_04126 0.50 -0.7
480,452 - BACOVA_04126 0.50 -0.5
480,452 - BACOVA_04126 0.50 -1.3
480,511 - BACOVA_04126 0.52 +1.1
480,557 + BACOVA_04126 0.53 -0.5
480,576 + BACOVA_04126 0.54 -0.3
480,577 - BACOVA_04126 0.54 +0.1
480,592 - BACOVA_04126 0.54 -1.5
480,592 - BACOVA_04126 0.54 +0.9
480,596 + BACOVA_04126 0.54 +0.5
480,596 + BACOVA_04126 0.54 +1.4
480,635 + BACOVA_04126 0.55 +3.9
480,763 - BACOVA_04126 0.58 -0.9
480,813 - BACOVA_04126 0.60 +1.3
480,813 - BACOVA_04126 0.60 +1.1
480,821 + BACOVA_04126 0.60 +1.1
480,821 + BACOVA_04126 0.60 -1.0
480,861 + BACOVA_04126 0.61 +2.1
480,924 - BACOVA_04126 0.63 +0.1
480,999 + BACOVA_04126 0.64 -0.5
481,019 - BACOVA_04126 0.65 +1.9
481,058 + BACOVA_04126 0.66 -1.5
481,073 - BACOVA_04126 0.66 +0.1
481,077 - BACOVA_04126 0.66 -2.0
481,096 - BACOVA_04126 0.67 -3.2
481,096 - BACOVA_04126 0.67 -2.5
481,096 - BACOVA_04126 0.67 +2.1
481,113 + BACOVA_04126 0.67 -0.6
481,114 - BACOVA_04126 0.67 +1.3
481,145 + BACOVA_04126 0.68 -1.0
481,145 + BACOVA_04126 0.68 +0.5
481,146 - BACOVA_04126 0.68 -1.6
481,146 - BACOVA_04126 0.68 -0.9
481,147 + BACOVA_04126 0.68 -1.0
481,147 + BACOVA_04126 0.68 -0.8
481,147 + BACOVA_04126 0.68 +0.1
481,148 - BACOVA_04126 0.68 +2.9
481,148 - BACOVA_04126 0.68 +1.5
481,301 + BACOVA_04126 0.72 +0.1
481,301 + BACOVA_04126 0.72 +0.8
481,396 - BACOVA_04126 0.75 -1.2
481,433 + BACOVA_04126 0.76 +0.1
481,475 + BACOVA_04126 0.77 +2.2
481,491 - BACOVA_04126 0.77 -0.3
481,497 + BACOVA_04126 0.77 -0.0
481,497 + BACOVA_04126 0.77 +2.1
481,516 + BACOVA_04126 0.78 -0.5
481,521 + BACOVA_04126 0.78 -2.9
481,522 - BACOVA_04126 0.78 -2.0
481,545 + BACOVA_04126 0.79 +0.5
481,574 + BACOVA_04126 0.79 -2.7
481,574 + BACOVA_04126 0.79 -0.8
481,622 - BACOVA_04126 0.81 -0.9
481,627 - BACOVA_04126 0.81 -0.9
481,635 + BACOVA_04126 0.81 -0.7
481,654 - BACOVA_04126 0.81 -0.2
481,656 - BACOVA_04126 0.81 -1.0
481,678 + BACOVA_04126 0.82 -2.2
481,713 + BACOVA_04126 0.83 +0.4
481,721 + BACOVA_04126 0.83 -0.8
481,721 + BACOVA_04126 0.83 -1.5
481,831 - BACOVA_04126 0.86 -0.7
481,835 - BACOVA_04126 0.86 -1.5
481,835 - BACOVA_04126 0.86 +1.1
482,035 + -0.9
482,035 + -1.0
482,036 - -0.5
482,110 - +3.4
482,136 + -1.5
482,137 - +2.9
482,159 - -0.0
482,189 + -1.3
482,200 + +1.1
482,260 - -0.2
482,299 + -1.2
482,300 - +0.5
482,305 + -0.2
482,305 + +0.5
482,306 - -0.6
482,315 + -0.1
482,317 + -0.0
482,318 - -1.4
482,356 + -0.0
482,370 + -2.5
482,371 - -0.9
482,407 + +1.1
482,453 + -0.7
482,456 - -0.7
482,457 + -0.6
482,458 - -1.2
482,465 - -0.2
482,468 - +3.1
482,560 - BACOVA_04127 0.11 +0.8
482,569 + BACOVA_04127 0.11 -1.0
482,652 + BACOVA_04127 0.17 -0.0
482,659 - BACOVA_04127 0.18 -1.8
482,659 - BACOVA_04127 0.18 +2.5
482,826 + BACOVA_04127 0.29 +0.4
482,827 - BACOVA_04127 0.29 -0.5
482,847 + BACOVA_04127 0.30 +0.6
482,848 - BACOVA_04127 0.30 -0.2
482,872 + BACOVA_04127 0.32 -0.5
482,899 - BACOVA_04127 0.34 -0.2
482,902 + BACOVA_04127 0.34 +0.5
483,331 + BACOVA_04127 0.63 -1.3
483,346 + BACOVA_04127 0.64 +1.1
483,347 - BACOVA_04127 0.64 -0.2
483,348 + BACOVA_04127 0.64 -0.8

Or see this region's nucleotide sequence