Experiment: amylopectin from maize 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03750 and BACOVA_03751 are separated by 55 nucleotides BACOVA_03751 and BACOVA_03752 are separated by 8 nucleotides
BACOVA_03750: BACOVA_03750 - phosphate-selective porin O and P, at 80,242 to 81,612
_03750
BACOVA_03751: BACOVA_03751 - hypothetical protein, at 81,668 to 81,775
_03751
BACOVA_03752: BACOVA_03752 - carbamoyl-phosphate synthase, large subunit, at 81,784 to 85,011
_03752
Position (kb)
81
82 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 80.669 kb on + strand, within BACOVA_03750 at 80.670 kb on - strand, within BACOVA_03750 at 80.670 kb on - strand, within BACOVA_03750 at 80.674 kb on - strand, within BACOVA_03750 at 80.691 kb on + strand, within BACOVA_03750 at 80.691 kb on + strand, within BACOVA_03750 at 80.698 kb on - strand, within BACOVA_03750 at 80.699 kb on + strand, within BACOVA_03750 at 80.709 kb on - strand, within BACOVA_03750 at 80.751 kb on + strand, within BACOVA_03750 at 80.751 kb on + strand, within BACOVA_03750 at 80.754 kb on + strand, within BACOVA_03750 at 80.756 kb on + strand, within BACOVA_03750 at 80.880 kb on + strand, within BACOVA_03750 at 80.881 kb on - strand, within BACOVA_03750 at 80.885 kb on + strand, within BACOVA_03750 at 80.918 kb on + strand, within BACOVA_03750 at 80.923 kb on - strand, within BACOVA_03750 at 80.935 kb on + strand, within BACOVA_03750 at 80.989 kb on - strand, within BACOVA_03750 at 81.200 kb on + strand, within BACOVA_03750 at 81.209 kb on + strand, within BACOVA_03750 at 81.209 kb on + strand, within BACOVA_03750 at 81.213 kb on + strand, within BACOVA_03750 at 81.214 kb on - strand, within BACOVA_03750 at 81.220 kb on + strand, within BACOVA_03750 at 81.313 kb on - strand, within BACOVA_03750 at 81.425 kb on + strand, within BACOVA_03750 at 81.446 kb on - strand, within BACOVA_03750 at 81.516 kb on + strand at 81.516 kb on + strand at 81.517 kb on - strand at 81.559 kb on + strand at 81.559 kb on + strand at 81.660 kb on - strand at 81.678 kb on + strand at 81.682 kb on - strand, within BACOVA_03751 at 81.689 kb on + strand, within BACOVA_03751 at 81.729 kb on + strand, within BACOVA_03751 at 81.785 kb on + strand at 81.792 kb on - strand at 81.811 kb on - strand at 81.814 kb on + strand at 81.814 kb on + strand at 81.814 kb on + strand at 81.814 kb on + strand at 81.815 kb on - strand at 81.815 kb on - strand at 81.815 kb on - strand at 81.816 kb on + strand at 81.816 kb on + strand at 81.817 kb on - strand at 81.835 kb on - strand at 81.876 kb on + strand at 81.888 kb on + strand at 81.888 kb on + strand at 81.888 kb on + strand at 81.927 kb on + strand at 81.928 kb on - strand at 81.931 kb on + strand at 81.932 kb on - strand at 81.968 kb on - strand at 82.035 kb on - strand at 82.080 kb on + strand at 82.179 kb on + strand, within BACOVA_03752 at 82.194 kb on + strand, within BACOVA_03752 at 82.239 kb on + strand, within BACOVA_03752 at 82.279 kb on - strand, within BACOVA_03752 at 82.349 kb on + strand, within BACOVA_03752 at 82.480 kb on - strand, within BACOVA_03752 at 82.498 kb on - strand, within BACOVA_03752 at 82.554 kb on + strand, within BACOVA_03752 at 82.572 kb on + strand, within BACOVA_03752 at 82.597 kb on + strand, within BACOVA_03752 at 82.645 kb on + strand, within BACOVA_03752 at 82.673 kb on - strand, within BACOVA_03752 at 82.673 kb on - strand, within BACOVA_03752 at 82.674 kb on + strand, within BACOVA_03752 at 82.674 kb on + strand, within BACOVA_03752 at 82.675 kb on - strand, within BACOVA_03752 at 82.675 kb on - strand, within BACOVA_03752 at 82.679 kb on + strand, within BACOVA_03752 at 82.754 kb on - strand, within BACOVA_03752 at 82.774 kb on + strand, within BACOVA_03752
Per-strain Table
Position Strand Gene LocusTag Fraction amylopectin from maize 2.5 mg/ml (C) remove 80,669 + BACOVA_03750 0.31 -0.0 80,670 - BACOVA_03750 0.31 -0.1 80,670 - BACOVA_03750 0.31 -1.0 80,674 - BACOVA_03750 0.32 -1.2 80,691 + BACOVA_03750 0.33 +2.8 80,691 + BACOVA_03750 0.33 +1.0 80,698 - BACOVA_03750 0.33 +0.6 80,699 + BACOVA_03750 0.33 +1.1 80,709 - BACOVA_03750 0.34 -1.2 80,751 + BACOVA_03750 0.37 +0.3 80,751 + BACOVA_03750 0.37 -0.6 80,754 + BACOVA_03750 0.37 +0.6 80,756 + BACOVA_03750 0.37 +2.4 80,880 + BACOVA_03750 0.47 +0.8 80,881 - BACOVA_03750 0.47 -0.0 80,885 + BACOVA_03750 0.47 -0.1 80,918 + BACOVA_03750 0.49 +1.0 80,923 - BACOVA_03750 0.50 -0.8 80,935 + BACOVA_03750 0.51 -2.7 80,989 - BACOVA_03750 0.54 +1.5 81,200 + BACOVA_03750 0.70 +0.2 81,209 + BACOVA_03750 0.71 -2.2 81,209 + BACOVA_03750 0.71 -1.9 81,213 + BACOVA_03750 0.71 -1.5 81,214 - BACOVA_03750 0.71 -2.1 81,220 + BACOVA_03750 0.71 -0.4 81,313 - BACOVA_03750 0.78 +0.8 81,425 + BACOVA_03750 0.86 -1.6 81,446 - BACOVA_03750 0.88 +0.6 81,516 + +3.4 81,516 + +2.4 81,517 - +0.6 81,559 + +2.3 81,559 + +1.6 81,660 - -1.0 81,678 + -3.1 81,682 - BACOVA_03751 0.13 -1.6 81,689 + BACOVA_03751 0.19 +0.6 81,729 + BACOVA_03751 0.56 -0.1 81,785 + -1.3 81,792 - +0.2 81,811 - -2.3 81,814 + -1.3 81,814 + +3.2 81,814 + -1.1 81,814 + +1.4 81,815 - +2.8 81,815 - +3.1 81,815 - -0.2 81,816 + +2.5 81,816 + -0.4 81,817 - -0.2 81,835 - +1.1 81,876 + -1.5 81,888 + -0.6 81,888 + -0.1 81,888 + +1.6 81,927 + -1.0 81,928 - -2.2 81,931 + -0.6 81,932 - +2.2 81,968 - -1.4 82,035 - +0.2 82,080 + +0.6 82,179 + BACOVA_03752 0.12 -1.6 82,194 + BACOVA_03752 0.13 -1.6 82,239 + BACOVA_03752 0.14 -2.4 82,279 - BACOVA_03752 0.15 +1.0 82,349 + BACOVA_03752 0.18 +0.4 82,480 - BACOVA_03752 0.22 -1.2 82,498 - BACOVA_03752 0.22 -0.2 82,554 + BACOVA_03752 0.24 -0.9 82,572 + BACOVA_03752 0.24 -1.0 82,597 + BACOVA_03752 0.25 -0.5 82,645 + BACOVA_03752 0.27 +1.8 82,673 - BACOVA_03752 0.28 -1.1 82,673 - BACOVA_03752 0.28 -1.2 82,674 + BACOVA_03752 0.28 -0.7 82,674 + BACOVA_03752 0.28 +0.6 82,675 - BACOVA_03752 0.28 +1.2 82,675 - BACOVA_03752 0.28 +0.2 82,679 + BACOVA_03752 0.28 -0.1 82,754 - BACOVA_03752 0.30 -0.5 82,774 + BACOVA_03752 0.31 -0.5
Or see this region's nucleotide sequence