Experiment: amylopectin from maize 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03694 and BACOVA_03695 are separated by 48 nucleotides BACOVA_03695 and BACOVA_03696 are separated by 133 nucleotides BACOVA_03696 and BACOVA_03697 are separated by 159 nucleotides
BACOVA_03694: BACOVA_03694 - MATE efflux family protein, at 24,319 to 25,650
_03694
BACOVA_03695: BACOVA_03695 - peptidase, S9A/B/C family, catalytic domain protein, at 25,699 to 27,801
_03695
BACOVA_03696: BACOVA_03696 - hypothetical protein, at 27,935 to 28,441
_03696
BACOVA_03697: BACOVA_03697 - hypothetical protein, at 28,601 to 29,479
_03697
Position (kb) 25
26
27
28 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 24.705 kb on + strand, within BACOVA_03694 at 24.706 kb on - strand, within BACOVA_03694 at 24.742 kb on - strand, within BACOVA_03694 at 24.770 kb on + strand, within BACOVA_03694 at 24.808 kb on - strand, within BACOVA_03694 at 24.833 kb on + strand, within BACOVA_03694 at 24.833 kb on + strand, within BACOVA_03694 at 24.841 kb on + strand, within BACOVA_03694 at 24.841 kb on + strand, within BACOVA_03694 at 24.842 kb on - strand, within BACOVA_03694 at 24.946 kb on + strand, within BACOVA_03694 at 24.947 kb on - strand, within BACOVA_03694 at 24.947 kb on - strand, within BACOVA_03694 at 24.947 kb on - strand, within BACOVA_03694 at 24.947 kb on - strand, within BACOVA_03694 at 24.988 kb on - strand, within BACOVA_03694 at 24.990 kb on - strand, within BACOVA_03694 at 25.245 kb on - strand, within BACOVA_03694 at 25.251 kb on + strand, within BACOVA_03694 at 25.254 kb on + strand, within BACOVA_03694 at 25.255 kb on - strand, within BACOVA_03694 at 25.255 kb on - strand, within BACOVA_03694 at 25.280 kb on - strand, within BACOVA_03694 at 25.280 kb on - strand, within BACOVA_03694 at 25.281 kb on + strand, within BACOVA_03694 at 25.281 kb on + strand, within BACOVA_03694 at 25.283 kb on + strand, within BACOVA_03694 at 25.283 kb on + strand, within BACOVA_03694 at 25.338 kb on + strand, within BACOVA_03694 at 25.338 kb on + strand, within BACOVA_03694 at 25.339 kb on - strand, within BACOVA_03694 at 25.343 kb on - strand, within BACOVA_03694 at 25.343 kb on - strand, within BACOVA_03694 at 25.345 kb on - strand, within BACOVA_03694 at 25.351 kb on - strand, within BACOVA_03694 at 25.385 kb on + strand, within BACOVA_03694 at 25.386 kb on - strand, within BACOVA_03694 at 25.405 kb on + strand, within BACOVA_03694 at 25.406 kb on - strand, within BACOVA_03694 at 25.406 kb on - strand, within BACOVA_03694 at 25.493 kb on + strand, within BACOVA_03694 at 25.493 kb on + strand, within BACOVA_03694 at 25.501 kb on - strand, within BACOVA_03694 at 25.513 kb on + strand, within BACOVA_03694 at 25.513 kb on + strand, within BACOVA_03694 at 25.522 kb on + strand at 25.578 kb on - strand at 25.580 kb on - strand at 25.606 kb on + strand at 25.613 kb on - strand at 25.613 kb on - strand at 25.648 kb on + strand at 25.696 kb on + strand at 25.698 kb on + strand at 25.715 kb on + strand at 25.719 kb on + strand at 25.719 kb on + strand at 25.719 kb on + strand at 25.742 kb on + strand at 25.806 kb on + strand at 25.809 kb on + strand at 25.904 kb on - strand at 25.905 kb on + strand at 25.915 kb on + strand, within BACOVA_03695 at 25.919 kb on - strand, within BACOVA_03695 at 26.032 kb on - strand, within BACOVA_03695 at 26.061 kb on + strand, within BACOVA_03695 at 26.087 kb on - strand, within BACOVA_03695 at 26.132 kb on - strand, within BACOVA_03695 at 26.132 kb on - strand, within BACOVA_03695 at 26.132 kb on - strand, within BACOVA_03695 at 26.143 kb on - strand, within BACOVA_03695 at 26.143 kb on - strand, within BACOVA_03695 at 26.338 kb on - strand, within BACOVA_03695 at 26.381 kb on - strand, within BACOVA_03695 at 26.381 kb on - strand, within BACOVA_03695 at 26.509 kb on + strand, within BACOVA_03695 at 26.509 kb on + strand, within BACOVA_03695 at 26.509 kb on + strand, within BACOVA_03695 at 26.509 kb on + strand, within BACOVA_03695 at 26.509 kb on + strand, within BACOVA_03695 at 26.602 kb on + strand, within BACOVA_03695 at 26.603 kb on - strand, within BACOVA_03695 at 26.603 kb on - strand, within BACOVA_03695 at 26.749 kb on - strand, within BACOVA_03695 at 26.771 kb on + strand, within BACOVA_03695 at 26.771 kb on + strand, within BACOVA_03695 at 26.772 kb on - strand, within BACOVA_03695 at 26.832 kb on + strand, within BACOVA_03695 at 26.846 kb on - strand, within BACOVA_03695 at 26.851 kb on + strand, within BACOVA_03695 at 26.878 kb on - strand, within BACOVA_03695 at 26.924 kb on - strand, within BACOVA_03695 at 26.981 kb on - strand, within BACOVA_03695 at 26.981 kb on - strand, within BACOVA_03695 at 27.036 kb on + strand, within BACOVA_03695 at 27.102 kb on - strand, within BACOVA_03695 at 27.181 kb on - strand, within BACOVA_03695 at 27.187 kb on + strand, within BACOVA_03695 at 27.187 kb on + strand, within BACOVA_03695 at 27.187 kb on + strand, within BACOVA_03695 at 27.188 kb on - strand, within BACOVA_03695 at 27.322 kb on + strand, within BACOVA_03695 at 27.378 kb on - strand, within BACOVA_03695 at 27.495 kb on + strand, within BACOVA_03695 at 27.540 kb on + strand, within BACOVA_03695 at 27.540 kb on + strand, within BACOVA_03695 at 27.541 kb on - strand, within BACOVA_03695 at 27.563 kb on + strand, within BACOVA_03695 at 27.564 kb on - strand, within BACOVA_03695 at 27.564 kb on - strand, within BACOVA_03695 at 27.589 kb on - strand, within BACOVA_03695 at 27.589 kb on - strand, within BACOVA_03695 at 27.597 kb on + strand at 27.597 kb on + strand at 27.598 kb on - strand at 27.616 kb on + strand at 27.631 kb on - strand at 27.639 kb on + strand at 27.741 kb on - strand at 27.817 kb on - strand at 27.820 kb on + strand at 27.820 kb on + strand at 27.821 kb on - strand at 27.823 kb on + strand at 27.824 kb on - strand at 27.829 kb on - strand at 27.834 kb on + strand at 27.834 kb on + strand at 27.834 kb on + strand at 27.834 kb on + strand at 27.834 kb on + strand at 27.837 kb on + strand at 27.916 kb on - strand at 27.946 kb on - strand at 27.950 kb on - strand at 27.968 kb on - strand at 27.968 kb on - strand at 27.969 kb on + strand at 27.969 kb on + strand at 27.970 kb on - strand at 27.970 kb on - strand at 27.970 kb on - strand at 27.970 kb on - strand at 27.976 kb on + strand at 27.976 kb on + strand at 27.977 kb on - strand at 27.977 kb on - strand at 28.002 kb on + strand, within BACOVA_03696 at 28.125 kb on - strand, within BACOVA_03696 at 28.153 kb on + strand, within BACOVA_03696 at 28.153 kb on + strand, within BACOVA_03696 at 28.154 kb on - strand, within BACOVA_03696 at 28.154 kb on - strand, within BACOVA_03696 at 28.158 kb on - strand, within BACOVA_03696 at 28.159 kb on + strand, within BACOVA_03696 at 28.162 kb on + strand, within BACOVA_03696 at 28.162 kb on + strand, within BACOVA_03696 at 28.162 kb on + strand, within BACOVA_03696 at 28.163 kb on - strand, within BACOVA_03696 at 28.214 kb on + strand, within BACOVA_03696 at 28.258 kb on - strand, within BACOVA_03696 at 28.262 kb on - strand, within BACOVA_03696 at 28.262 kb on - strand, within BACOVA_03696 at 28.369 kb on + strand, within BACOVA_03696 at 28.457 kb on + strand at 28.461 kb on + strand at 28.467 kb on + strand at 28.472 kb on - strand at 28.477 kb on - strand at 28.508 kb on + strand at 28.530 kb on + strand at 28.530 kb on + strand at 28.530 kb on + strand at 28.584 kb on - strand at 28.590 kb on + strand at 28.590 kb on + strand at 28.594 kb on + strand at 28.594 kb on + strand at 28.594 kb on + strand at 28.595 kb on - strand at 28.599 kb on - strand at 28.638 kb on + strand at 28.735 kb on - strand, within BACOVA_03697 at 28.801 kb on + strand, within BACOVA_03697
Per-strain Table
Position Strand Gene LocusTag Fraction amylopectin from maize 2.5 mg/ml (C) remove 24,705 + BACOVA_03694 0.29 -1.6 24,706 - BACOVA_03694 0.29 +1.6 24,742 - BACOVA_03694 0.32 -0.6 24,770 + BACOVA_03694 0.34 +1.2 24,808 - BACOVA_03694 0.37 +2.2 24,833 + BACOVA_03694 0.39 +0.2 24,833 + BACOVA_03694 0.39 -0.4 24,841 + BACOVA_03694 0.39 -0.1 24,841 + BACOVA_03694 0.39 -1.5 24,842 - BACOVA_03694 0.39 -1.0 24,946 + BACOVA_03694 0.47 +0.6 24,947 - BACOVA_03694 0.47 +0.8 24,947 - BACOVA_03694 0.47 -1.1 24,947 - BACOVA_03694 0.47 -1.0 24,947 - BACOVA_03694 0.47 -1.4 24,988 - BACOVA_03694 0.50 -2.0 24,990 - BACOVA_03694 0.50 +0.7 25,245 - BACOVA_03694 0.70 +0.6 25,251 + BACOVA_03694 0.70 -1.0 25,254 + BACOVA_03694 0.70 +1.4 25,255 - BACOVA_03694 0.70 -2.1 25,255 - BACOVA_03694 0.70 -0.2 25,280 - BACOVA_03694 0.72 -0.8 25,280 - BACOVA_03694 0.72 +1.7 25,281 + BACOVA_03694 0.72 -0.6 25,281 + BACOVA_03694 0.72 -0.4 25,283 + BACOVA_03694 0.72 +2.3 25,283 + BACOVA_03694 0.72 -1.8 25,338 + BACOVA_03694 0.77 +0.5 25,338 + BACOVA_03694 0.77 -1.4 25,339 - BACOVA_03694 0.77 -1.0 25,343 - BACOVA_03694 0.77 -0.8 25,343 - BACOVA_03694 0.77 -1.8 25,345 - BACOVA_03694 0.77 -1.1 25,351 - BACOVA_03694 0.77 +1.1 25,385 + BACOVA_03694 0.80 -0.1 25,386 - BACOVA_03694 0.80 +1.7 25,405 + BACOVA_03694 0.82 +1.5 25,406 - BACOVA_03694 0.82 +0.9 25,406 - BACOVA_03694 0.82 -0.8 25,493 + BACOVA_03694 0.88 -2.0 25,493 + BACOVA_03694 0.88 -0.6 25,501 - BACOVA_03694 0.89 -0.8 25,513 + BACOVA_03694 0.90 +1.2 25,513 + BACOVA_03694 0.90 +3.2 25,522 + -0.5 25,578 - +0.3 25,580 - +1.2 25,606 + +0.4 25,613 - +0.6 25,613 - -0.1 25,648 + -0.4 25,696 + +1.2 25,698 + -1.2 25,715 + -1.0 25,719 + +0.6 25,719 + +1.5 25,719 + +1.6 25,742 + -0.4 25,806 + +2.2 25,809 + -0.1 25,904 - -0.8 25,905 + +3.2 25,915 + BACOVA_03695 0.10 -0.8 25,919 - BACOVA_03695 0.10 -1.2 26,032 - BACOVA_03695 0.16 +1.6 26,061 + BACOVA_03695 0.17 +2.6 26,087 - BACOVA_03695 0.18 +1.1 26,132 - BACOVA_03695 0.21 +1.0 26,132 - BACOVA_03695 0.21 +1.0 26,132 - BACOVA_03695 0.21 -1.9 26,143 - BACOVA_03695 0.21 -0.7 26,143 - BACOVA_03695 0.21 +1.4 26,338 - BACOVA_03695 0.30 +3.2 26,381 - BACOVA_03695 0.32 +0.0 26,381 - BACOVA_03695 0.32 +0.2 26,509 + BACOVA_03695 0.39 -0.1 26,509 + BACOVA_03695 0.39 +1.2 26,509 + BACOVA_03695 0.39 -0.1 26,509 + BACOVA_03695 0.39 +3.8 26,509 + BACOVA_03695 0.39 -1.5 26,602 + BACOVA_03695 0.43 +0.5 26,603 - BACOVA_03695 0.43 -0.8 26,603 - BACOVA_03695 0.43 -1.9 26,749 - BACOVA_03695 0.50 -1.1 26,771 + BACOVA_03695 0.51 -0.8 26,771 + BACOVA_03695 0.51 +1.3 26,772 - BACOVA_03695 0.51 -0.4 26,832 + BACOVA_03695 0.54 +0.1 26,846 - BACOVA_03695 0.55 -0.1 26,851 + BACOVA_03695 0.55 -0.4 26,878 - BACOVA_03695 0.56 +2.4 26,924 - BACOVA_03695 0.58 +1.2 26,981 - BACOVA_03695 0.61 +0.0 26,981 - BACOVA_03695 0.61 -1.1 27,036 + BACOVA_03695 0.64 -1.1 27,102 - BACOVA_03695 0.67 -1.2 27,181 - BACOVA_03695 0.70 -1.0 27,187 + BACOVA_03695 0.71 +0.8 27,187 + BACOVA_03695 0.71 -1.8 27,187 + BACOVA_03695 0.71 +0.3 27,188 - BACOVA_03695 0.71 -0.1 27,322 + BACOVA_03695 0.77 -0.6 27,378 - BACOVA_03695 0.80 -0.6 27,495 + BACOVA_03695 0.85 -1.0 27,540 + BACOVA_03695 0.88 +0.2 27,540 + BACOVA_03695 0.88 -0.7 27,541 - BACOVA_03695 0.88 -0.4 27,563 + BACOVA_03695 0.89 -2.0 27,564 - BACOVA_03695 0.89 -0.8 27,564 - BACOVA_03695 0.89 +0.6 27,589 - BACOVA_03695 0.90 -0.1 27,589 - BACOVA_03695 0.90 -0.2 27,597 + +1.2 27,597 + -2.5 27,598 - +2.2 27,616 + -1.1 27,631 - +0.2 27,639 + +0.6 27,741 - +0.6 27,817 - +1.8 27,820 + +0.2 27,820 + +0.2 27,821 - -1.5 27,823 + -1.9 27,824 - -0.4 27,829 - +0.1 27,834 + -1.7 27,834 + -0.1 27,834 + -0.9 27,834 + +1.2 27,834 + -1.5 27,837 + -1.6 27,916 - -0.4 27,946 - -0.6 27,950 - +1.2 27,968 - +0.2 27,968 - +0.5 27,969 + +0.2 27,969 + -0.6 27,970 - -1.0 27,970 - +3.8 27,970 - +1.6 27,970 - +0.8 27,976 + -0.0 27,976 + +1.2 27,977 - +0.9 27,977 - -0.8 28,002 + BACOVA_03696 0.13 -1.1 28,125 - BACOVA_03696 0.37 +2.3 28,153 + BACOVA_03696 0.43 -1.0 28,153 + BACOVA_03696 0.43 +2.8 28,154 - BACOVA_03696 0.43 -1.7 28,154 - BACOVA_03696 0.43 +3.1 28,158 - BACOVA_03696 0.44 -0.6 28,159 + BACOVA_03696 0.44 +1.2 28,162 + BACOVA_03696 0.45 -1.9 28,162 + BACOVA_03696 0.45 +0.0 28,162 + BACOVA_03696 0.45 -0.1 28,163 - BACOVA_03696 0.45 +0.6 28,214 + BACOVA_03696 0.55 -1.1 28,258 - BACOVA_03696 0.64 +0.6 28,262 - BACOVA_03696 0.64 -0.3 28,262 - BACOVA_03696 0.64 +1.1 28,369 + BACOVA_03696 0.86 +1.2 28,457 + +1.8 28,461 + -1.0 28,467 + -0.6 28,472 - -1.5 28,477 - -0.5 28,508 + -1.4 28,530 + -0.6 28,530 + -0.4 28,530 + +0.3 28,584 - +0.2 28,590 + -1.2 28,590 + +1.4 28,594 + -0.9 28,594 + -0.0 28,594 + +0.3 28,595 - +2.7 28,599 - -0.8 28,638 + -0.3 28,735 - BACOVA_03697 0.15 +1.5 28,801 + BACOVA_03697 0.23 -1.9
Or see this region's nucleotide sequence