Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03554

Experiment: amylopectin from maize 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03551 and BACOVA_03552 are separated by 93 nucleotidesBACOVA_03552 and BACOVA_03553 are separated by 16 nucleotidesBACOVA_03553 and BACOVA_03554 are separated by 275 nucleotidesBACOVA_03554 and BACOVA_03555 are separated by 23 nucleotides BACOVA_03551: BACOVA_03551 - argininosuccinate lyase, at 325,323 to 326,684 _03551 BACOVA_03552: BACOVA_03552 - tRNA-Gly, at 326,778 to 326,850 _03552 BACOVA_03553: BACOVA_03553 - tRNA-Leu, at 326,867 to 326,950 _03553 BACOVA_03554: BACOVA_03554 - RNA polymerase sigma-70 factor, at 327,226 to 327,780 _03554 BACOVA_03555: BACOVA_03555 - sigma factor regulatory protein, FecR/PupR family, at 327,804 to 328,823 _03555 Position (kb) 327 328Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 326.238 kb on - strand, within BACOVA_03551at 326.318 kb on + strand, within BACOVA_03551at 326.379 kb on + strand, within BACOVA_03551at 326.379 kb on + strand, within BACOVA_03551at 326.401 kb on + strand, within BACOVA_03551at 326.402 kb on - strand, within BACOVA_03551at 326.411 kb on + strand, within BACOVA_03551at 326.412 kb on - strand, within BACOVA_03551at 326.412 kb on - strand, within BACOVA_03551at 326.430 kb on + strand, within BACOVA_03551at 326.430 kb on + strand, within BACOVA_03551at 326.431 kb on - strand, within BACOVA_03551at 326.439 kb on - strand, within BACOVA_03551at 326.499 kb on + strand, within BACOVA_03551at 326.499 kb on + strand, within BACOVA_03551at 326.499 kb on + strand, within BACOVA_03551at 326.499 kb on + strand, within BACOVA_03551at 326.501 kb on + strand, within BACOVA_03551at 326.501 kb on + strand, within BACOVA_03551at 326.502 kb on - strand, within BACOVA_03551at 326.531 kb on + strand, within BACOVA_03551at 326.543 kb on + strand, within BACOVA_03551at 326.546 kb on + strand, within BACOVA_03551at 326.547 kb on - strand, within BACOVA_03551at 326.547 kb on - strand, within BACOVA_03551at 326.547 kb on - strand, within BACOVA_03551at 326.554 kb on + strandat 326.554 kb on + strandat 326.554 kb on + strandat 326.555 kb on - strandat 326.561 kb on + strandat 326.562 kb on - strandat 326.574 kb on - strandat 326.591 kb on + strandat 326.592 kb on - strandat 326.682 kb on + strandat 326.687 kb on + strandat 327.049 kb on + strandat 327.059 kb on + strandat 327.088 kb on - strandat 327.117 kb on + strandat 327.133 kb on + strandat 327.154 kb on + strandat 327.159 kb on + strandat 327.177 kb on - strandat 327.179 kb on - strandat 327.185 kb on + strandat 327.363 kb on + strand, within BACOVA_03554at 327.402 kb on + strand, within BACOVA_03554at 327.403 kb on - strand, within BACOVA_03554at 327.419 kb on - strand, within BACOVA_03554at 327.428 kb on + strand, within BACOVA_03554at 327.473 kb on + strand, within BACOVA_03554at 327.484 kb on + strand, within BACOVA_03554at 327.517 kb on + strand, within BACOVA_03554at 327.542 kb on + strand, within BACOVA_03554at 327.543 kb on - strand, within BACOVA_03554at 327.559 kb on + strand, within BACOVA_03554at 327.559 kb on + strand, within BACOVA_03554at 327.560 kb on - strand, within BACOVA_03554at 327.560 kb on - strand, within BACOVA_03554at 327.561 kb on + strand, within BACOVA_03554at 327.562 kb on - strand, within BACOVA_03554at 327.575 kb on + strand, within BACOVA_03554at 327.576 kb on - strand, within BACOVA_03554at 327.624 kb on - strand, within BACOVA_03554at 327.632 kb on + strand, within BACOVA_03554at 327.633 kb on - strand, within BACOVA_03554at 327.650 kb on + strand, within BACOVA_03554at 327.650 kb on + strand, within BACOVA_03554at 327.651 kb on - strand, within BACOVA_03554at 327.712 kb on + strand, within BACOVA_03554at 327.774 kb on + strandat 327.774 kb on + strandat 327.778 kb on + strandat 327.778 kb on + strandat 327.779 kb on - strandat 327.779 kb on - strandat 327.781 kb on + strandat 327.782 kb on - strandat 327.785 kb on + strandat 327.785 kb on + strandat 327.789 kb on + strandat 327.793 kb on - strandat 327.793 kb on - strandat 327.798 kb on + strandat 327.808 kb on - strandat 327.809 kb on + strandat 327.849 kb on - strandat 327.878 kb on + strandat 327.881 kb on + strandat 327.885 kb on + strandat 327.885 kb on + strandat 328.056 kb on - strand, within BACOVA_03555at 328.074 kb on + strand, within BACOVA_03555at 328.085 kb on + strand, within BACOVA_03555at 328.086 kb on - strand, within BACOVA_03555at 328.086 kb on - strand, within BACOVA_03555at 328.086 kb on - strand, within BACOVA_03555at 328.104 kb on - strand, within BACOVA_03555at 328.138 kb on - strand, within BACOVA_03555at 328.185 kb on + strand, within BACOVA_03555at 328.186 kb on - strand, within BACOVA_03555at 328.186 kb on - strand, within BACOVA_03555at 328.187 kb on + strand, within BACOVA_03555at 328.190 kb on - strand, within BACOVA_03555at 328.214 kb on + strand, within BACOVA_03555at 328.230 kb on - strand, within BACOVA_03555at 328.230 kb on - strand, within BACOVA_03555at 328.233 kb on + strand, within BACOVA_03555at 328.233 kb on + strand, within BACOVA_03555at 328.233 kb on + strand, within BACOVA_03555at 328.233 kb on + strand, within BACOVA_03555at 328.233 kb on + strand, within BACOVA_03555at 328.234 kb on - strand, within BACOVA_03555at 328.234 kb on - strand, within BACOVA_03555at 328.234 kb on - strand, within BACOVA_03555at 328.234 kb on - strand, within BACOVA_03555at 328.257 kb on - strand, within BACOVA_03555at 328.258 kb on + strand, within BACOVA_03555at 328.259 kb on - strand, within BACOVA_03555at 328.261 kb on + strand, within BACOVA_03555at 328.261 kb on + strand, within BACOVA_03555at 328.261 kb on + strand, within BACOVA_03555at 328.262 kb on - strand, within BACOVA_03555at 328.262 kb on - strand, within BACOVA_03555at 328.265 kb on - strand, within BACOVA_03555at 328.265 kb on - strand, within BACOVA_03555at 328.300 kb on + strand, within BACOVA_03555at 328.300 kb on + strand, within BACOVA_03555at 328.302 kb on + strand, within BACOVA_03555at 328.303 kb on - strand, within BACOVA_03555at 328.360 kb on + strand, within BACOVA_03555at 328.391 kb on - strand, within BACOVA_03555at 328.404 kb on - strand, within BACOVA_03555at 328.409 kb on - strand, within BACOVA_03555at 328.428 kb on - strand, within BACOVA_03555at 328.457 kb on + strand, within BACOVA_03555at 328.457 kb on + strand, within BACOVA_03555at 328.458 kb on - strand, within BACOVA_03555at 328.479 kb on - strand, within BACOVA_03555at 328.501 kb on + strand, within BACOVA_03555at 328.508 kb on + strand, within BACOVA_03555at 328.568 kb on - strand, within BACOVA_03555at 328.568 kb on - strand, within BACOVA_03555at 328.607 kb on + strand, within BACOVA_03555at 328.607 kb on + strand, within BACOVA_03555at 328.613 kb on + strand, within BACOVA_03555at 328.613 kb on + strand, within BACOVA_03555at 328.614 kb on - strand, within BACOVA_03555at 328.628 kb on + strand, within BACOVA_03555at 328.669 kb on + strand, within BACOVA_03555at 328.669 kb on + strand, within BACOVA_03555at 328.682 kb on + strand, within BACOVA_03555at 328.683 kb on - strand, within BACOVA_03555at 328.698 kb on - strand, within BACOVA_03555at 328.698 kb on - strand, within BACOVA_03555at 328.752 kb on - strandat 328.774 kb on + strandat 328.780 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction amylopectin from maize 2.5 mg/ml (C)
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326,238 - BACOVA_03551 0.67 +0.1
326,318 + BACOVA_03551 0.73 -2.6
326,379 + BACOVA_03551 0.78 -1.2
326,379 + BACOVA_03551 0.78 +0.1
326,401 + BACOVA_03551 0.79 -3.6
326,402 - BACOVA_03551 0.79 -1.8
326,411 + BACOVA_03551 0.80 -2.2
326,412 - BACOVA_03551 0.80 -3.6
326,412 - BACOVA_03551 0.80 -2.6
326,430 + BACOVA_03551 0.81 +2.4
326,430 + BACOVA_03551 0.81 -3.4
326,431 - BACOVA_03551 0.81 -0.6
326,439 - BACOVA_03551 0.82 -1.0
326,499 + BACOVA_03551 0.86 -2.5
326,499 + BACOVA_03551 0.86 -2.7
326,499 + BACOVA_03551 0.86 -3.3
326,499 + BACOVA_03551 0.86 -2.0
326,501 + BACOVA_03551 0.86 -3.4
326,501 + BACOVA_03551 0.86 -2.7
326,502 - BACOVA_03551 0.87 -1.3
326,531 + BACOVA_03551 0.89 +0.8
326,543 + BACOVA_03551 0.90 -0.9
326,546 + BACOVA_03551 0.90 -2.0
326,547 - BACOVA_03551 0.90 -1.6
326,547 - BACOVA_03551 0.90 -3.6
326,547 - BACOVA_03551 0.90 -2.9
326,554 + -1.9
326,554 + -2.3
326,554 + -4.0
326,555 - -0.9
326,561 + +0.1
326,562 - -0.4
326,574 - -3.7
326,591 + -2.4
326,592 - -0.3
326,682 + -1.5
326,687 + -1.3
327,049 + -0.3
327,059 + -0.7
327,088 - +0.8
327,117 + +1.1
327,133 + +0.5
327,154 + -2.5
327,159 + +1.4
327,177 - -0.0
327,179 - -1.3
327,185 + -0.3
327,363 + BACOVA_03554 0.25 -0.4
327,402 + BACOVA_03554 0.32 +0.7
327,403 - BACOVA_03554 0.32 -0.2
327,419 - BACOVA_03554 0.35 +1.4
327,428 + BACOVA_03554 0.36 -1.9
327,473 + BACOVA_03554 0.45 -2.0
327,484 + BACOVA_03554 0.46 -0.7
327,517 + BACOVA_03554 0.52 +0.4
327,542 + BACOVA_03554 0.57 +2.0
327,543 - BACOVA_03554 0.57 -0.3
327,559 + BACOVA_03554 0.60 +1.2
327,559 + BACOVA_03554 0.60 +1.1
327,560 - BACOVA_03554 0.60 +0.1
327,560 - BACOVA_03554 0.60 -0.4
327,561 + BACOVA_03554 0.60 -1.3
327,562 - BACOVA_03554 0.61 +0.6
327,575 + BACOVA_03554 0.63 +0.4
327,576 - BACOVA_03554 0.63 +0.6
327,624 - BACOVA_03554 0.72 -1.8
327,632 + BACOVA_03554 0.73 +0.3
327,633 - BACOVA_03554 0.73 +2.1
327,650 + BACOVA_03554 0.76 +0.2
327,650 + BACOVA_03554 0.76 +0.4
327,651 - BACOVA_03554 0.77 -1.5
327,712 + BACOVA_03554 0.88 -1.0
327,774 + +1.4
327,774 + -0.3
327,778 + +1.4
327,778 + -1.2
327,779 - +1.2
327,779 - -0.3
327,781 + -0.8
327,782 - +0.4
327,785 + -0.2
327,785 + -0.4
327,789 + -1.9
327,793 - -0.2
327,793 - +0.8
327,798 + -0.4
327,808 - -3.2
327,809 + +0.3
327,849 - +0.2
327,878 + -0.6
327,881 + -0.0
327,885 + -0.0
327,885 + +0.1
328,056 - BACOVA_03555 0.25 +0.4
328,074 + BACOVA_03555 0.26 +0.9
328,085 + BACOVA_03555 0.28 +0.9
328,086 - BACOVA_03555 0.28 -1.6
328,086 - BACOVA_03555 0.28 +0.3
328,086 - BACOVA_03555 0.28 -0.2
328,104 - BACOVA_03555 0.29 -1.4
328,138 - BACOVA_03555 0.33 +0.8
328,185 + BACOVA_03555 0.37 -0.0
328,186 - BACOVA_03555 0.37 -1.5
328,186 - BACOVA_03555 0.37 -1.2
328,187 + BACOVA_03555 0.38 -0.9
328,190 - BACOVA_03555 0.38 -0.8
328,214 + BACOVA_03555 0.40 +0.5
328,230 - BACOVA_03555 0.42 +0.8
328,230 - BACOVA_03555 0.42 -1.7
328,233 + BACOVA_03555 0.42 +1.8
328,233 + BACOVA_03555 0.42 -0.0
328,233 + BACOVA_03555 0.42 -2.9
328,233 + BACOVA_03555 0.42 -1.1
328,233 + BACOVA_03555 0.42 -1.1
328,234 - BACOVA_03555 0.42 +1.4
328,234 - BACOVA_03555 0.42 -0.4
328,234 - BACOVA_03555 0.42 -2.7
328,234 - BACOVA_03555 0.42 +0.1
328,257 - BACOVA_03555 0.44 +0.6
328,258 + BACOVA_03555 0.45 +0.5
328,259 - BACOVA_03555 0.45 -2.0
328,261 + BACOVA_03555 0.45 -0.3
328,261 + BACOVA_03555 0.45 -0.2
328,261 + BACOVA_03555 0.45 -1.9
328,262 - BACOVA_03555 0.45 +3.7
328,262 - BACOVA_03555 0.45 -1.8
328,265 - BACOVA_03555 0.45 -1.0
328,265 - BACOVA_03555 0.45 -2.2
328,300 + BACOVA_03555 0.49 +0.4
328,300 + BACOVA_03555 0.49 -1.2
328,302 + BACOVA_03555 0.49 -1.8
328,303 - BACOVA_03555 0.49 -0.2
328,360 + BACOVA_03555 0.55 +2.4
328,391 - BACOVA_03555 0.58 -1.2
328,404 - BACOVA_03555 0.59 +0.1
328,409 - BACOVA_03555 0.59 +0.4
328,428 - BACOVA_03555 0.61 +0.8
328,457 + BACOVA_03555 0.64 -0.9
328,457 + BACOVA_03555 0.64 -2.0
328,458 - BACOVA_03555 0.64 -1.5
328,479 - BACOVA_03555 0.66 -0.4
328,501 + BACOVA_03555 0.68 -0.6
328,508 + BACOVA_03555 0.69 -0.7
328,568 - BACOVA_03555 0.75 -0.9
328,568 - BACOVA_03555 0.75 -1.3
328,607 + BACOVA_03555 0.79 +0.4
328,607 + BACOVA_03555 0.79 +0.8
328,613 + BACOVA_03555 0.79 -0.6
328,613 + BACOVA_03555 0.79 -1.2
328,614 - BACOVA_03555 0.79 +0.4
328,628 + BACOVA_03555 0.81 -1.7
328,669 + BACOVA_03555 0.85 +0.1
328,669 + BACOVA_03555 0.85 -0.6
328,682 + BACOVA_03555 0.86 +2.8
328,683 - BACOVA_03555 0.86 +3.1
328,698 - BACOVA_03555 0.88 +0.8
328,698 - BACOVA_03555 0.88 +0.8
328,752 - -0.8
328,774 + -1.3
328,780 - +0.4

Or see this region's nucleotide sequence