Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03491

Experiment: amylopectin from maize 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03490 and BACOVA_03491 are separated by 49 nucleotidesBACOVA_03491 and BACOVA_03492 are separated by 216 nucleotides BACOVA_03490: BACOVA_03490 - hypothetical protein, at 245,563 to 247,563 _03490 BACOVA_03491: BACOVA_03491 - hypothetical protein, at 247,613 to 249,346 _03491 BACOVA_03492: BACOVA_03492 - glycosyl hydrolase, family 43, at 249,563 to 250,609 _03492 Position (kb) 247 248 249 250Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 246.655 kb on - strand, within BACOVA_03490at 246.656 kb on - strand, within BACOVA_03490at 246.699 kb on + strand, within BACOVA_03490at 246.723 kb on + strand, within BACOVA_03490at 246.788 kb on - strand, within BACOVA_03490at 246.788 kb on - strand, within BACOVA_03490at 246.789 kb on + strand, within BACOVA_03490at 246.790 kb on - strand, within BACOVA_03490at 246.792 kb on + strand, within BACOVA_03490at 246.793 kb on - strand, within BACOVA_03490at 246.919 kb on - strand, within BACOVA_03490at 246.931 kb on + strand, within BACOVA_03490at 246.931 kb on + strand, within BACOVA_03490at 246.936 kb on + strand, within BACOVA_03490at 246.937 kb on - strand, within BACOVA_03490at 247.033 kb on + strand, within BACOVA_03490at 247.034 kb on - strand, within BACOVA_03490at 247.152 kb on + strand, within BACOVA_03490at 247.153 kb on - strand, within BACOVA_03490at 247.153 kb on - strand, within BACOVA_03490at 247.196 kb on - strand, within BACOVA_03490at 247.239 kb on + strand, within BACOVA_03490at 247.239 kb on + strand, within BACOVA_03490at 247.248 kb on + strand, within BACOVA_03490at 247.258 kb on - strand, within BACOVA_03490at 247.324 kb on + strand, within BACOVA_03490at 247.326 kb on + strand, within BACOVA_03490at 247.326 kb on + strand, within BACOVA_03490at 247.327 kb on - strand, within BACOVA_03490at 247.327 kb on - strand, within BACOVA_03490at 247.327 kb on - strand, within BACOVA_03490at 247.327 kb on - strand, within BACOVA_03490at 247.327 kb on - strand, within BACOVA_03490at 247.332 kb on - strand, within BACOVA_03490at 247.355 kb on + strand, within BACOVA_03490at 247.377 kb on + strandat 247.409 kb on + strandat 247.412 kb on - strandat 247.454 kb on - strandat 247.503 kb on + strandat 247.562 kb on - strandat 247.603 kb on + strandat 247.604 kb on - strandat 247.604 kb on - strandat 247.649 kb on + strandat 247.649 kb on + strandat 247.653 kb on + strandat 247.653 kb on + strandat 247.654 kb on - strandat 247.654 kb on - strandat 247.654 kb on - strandat 247.657 kb on + strandat 247.793 kb on - strand, within BACOVA_03491at 247.800 kb on - strand, within BACOVA_03491at 247.800 kb on - strand, within BACOVA_03491at 247.800 kb on - strand, within BACOVA_03491at 247.801 kb on + strand, within BACOVA_03491at 247.801 kb on + strand, within BACOVA_03491at 247.801 kb on + strand, within BACOVA_03491at 247.826 kb on - strand, within BACOVA_03491at 247.830 kb on + strand, within BACOVA_03491at 247.831 kb on - strand, within BACOVA_03491at 247.844 kb on + strand, within BACOVA_03491at 247.875 kb on + strand, within BACOVA_03491at 247.876 kb on - strand, within BACOVA_03491at 247.876 kb on - strand, within BACOVA_03491at 247.929 kb on + strand, within BACOVA_03491at 247.948 kb on + strand, within BACOVA_03491at 248.017 kb on + strand, within BACOVA_03491at 248.017 kb on + strand, within BACOVA_03491at 248.018 kb on - strand, within BACOVA_03491at 248.020 kb on + strand, within BACOVA_03491at 248.021 kb on - strand, within BACOVA_03491at 248.108 kb on - strand, within BACOVA_03491at 248.111 kb on + strand, within BACOVA_03491at 248.112 kb on - strand, within BACOVA_03491at 248.112 kb on - strand, within BACOVA_03491at 248.146 kb on + strand, within BACOVA_03491at 248.190 kb on + strand, within BACOVA_03491at 248.191 kb on - strand, within BACOVA_03491at 248.191 kb on - strand, within BACOVA_03491at 248.214 kb on + strand, within BACOVA_03491at 248.247 kb on - strand, within BACOVA_03491at 248.267 kb on - strand, within BACOVA_03491at 248.282 kb on + strand, within BACOVA_03491at 248.330 kb on - strand, within BACOVA_03491at 248.387 kb on - strand, within BACOVA_03491at 248.407 kb on + strand, within BACOVA_03491at 248.493 kb on + strand, within BACOVA_03491at 248.532 kb on + strand, within BACOVA_03491at 248.532 kb on + strand, within BACOVA_03491at 248.532 kb on + strand, within BACOVA_03491at 248.532 kb on + strand, within BACOVA_03491at 248.533 kb on - strand, within BACOVA_03491at 248.564 kb on + strand, within BACOVA_03491at 248.567 kb on + strand, within BACOVA_03491at 248.567 kb on + strand, within BACOVA_03491at 248.571 kb on - strand, within BACOVA_03491at 248.661 kb on - strand, within BACOVA_03491at 248.661 kb on - strand, within BACOVA_03491at 248.661 kb on - strand, within BACOVA_03491at 248.696 kb on - strand, within BACOVA_03491at 248.703 kb on + strand, within BACOVA_03491at 248.705 kb on + strand, within BACOVA_03491at 248.705 kb on + strand, within BACOVA_03491at 248.705 kb on + strand, within BACOVA_03491at 248.706 kb on - strand, within BACOVA_03491at 248.706 kb on - strand, within BACOVA_03491at 248.706 kb on - strand, within BACOVA_03491at 248.706 kb on - strand, within BACOVA_03491at 248.732 kb on + strand, within BACOVA_03491at 248.733 kb on - strand, within BACOVA_03491at 248.733 kb on - strand, within BACOVA_03491at 248.737 kb on + strand, within BACOVA_03491at 248.738 kb on - strand, within BACOVA_03491at 248.738 kb on - strand, within BACOVA_03491at 248.745 kb on - strand, within BACOVA_03491at 248.786 kb on - strand, within BACOVA_03491at 248.837 kb on + strand, within BACOVA_03491at 248.837 kb on + strand, within BACOVA_03491at 248.839 kb on + strand, within BACOVA_03491at 248.839 kb on + strand, within BACOVA_03491at 248.840 kb on - strand, within BACOVA_03491at 248.840 kb on - strand, within BACOVA_03491at 248.895 kb on - strand, within BACOVA_03491at 248.898 kb on - strand, within BACOVA_03491at 248.916 kb on + strand, within BACOVA_03491at 248.934 kb on - strand, within BACOVA_03491at 248.934 kb on - strand, within BACOVA_03491at 249.059 kb on - strand, within BACOVA_03491at 249.059 kb on - strand, within BACOVA_03491at 249.117 kb on - strand, within BACOVA_03491at 249.117 kb on - strand, within BACOVA_03491at 249.120 kb on + strand, within BACOVA_03491at 249.153 kb on - strand, within BACOVA_03491at 249.165 kb on + strand, within BACOVA_03491at 249.165 kb on + strand, within BACOVA_03491at 249.165 kb on + strand, within BACOVA_03491at 249.165 kb on + strand, within BACOVA_03491at 249.166 kb on - strand, within BACOVA_03491at 249.166 kb on - strand, within BACOVA_03491at 249.166 kb on - strand, within BACOVA_03491at 249.166 kb on - strand, within BACOVA_03491at 249.167 kb on + strand, within BACOVA_03491at 249.168 kb on - strand, within BACOVA_03491at 249.169 kb on + strand, within BACOVA_03491at 249.239 kb on + strandat 249.240 kb on - strandat 249.241 kb on + strandat 249.254 kb on + strandat 249.255 kb on - strandat 249.283 kb on + strandat 249.297 kb on + strandat 249.298 kb on - strandat 249.298 kb on - strandat 249.303 kb on + strandat 249.305 kb on + strandat 249.305 kb on + strandat 249.306 kb on - strandat 249.307 kb on + strandat 249.307 kb on + strandat 249.307 kb on + strandat 249.307 kb on + strandat 249.404 kb on - strandat 249.407 kb on - strandat 249.408 kb on + strandat 249.409 kb on - strandat 249.409 kb on - strandat 249.448 kb on + strandat 249.448 kb on + strandat 249.448 kb on + strandat 249.452 kb on - strandat 249.456 kb on + strandat 249.456 kb on + strandat 249.462 kb on + strandat 249.482 kb on + strandat 249.499 kb on - strandat 249.500 kb on + strandat 249.501 kb on - strandat 249.501 kb on - strandat 249.501 kb on - strandat 249.523 kb on + strandat 249.536 kb on - strandat 249.556 kb on + strandat 249.568 kb on + strandat 249.593 kb on - strandat 249.599 kb on - strandat 249.601 kb on - strandat 249.603 kb on + strandat 249.604 kb on - strandat 249.606 kb on + strandat 249.619 kb on + strandat 249.620 kb on - strandat 249.627 kb on + strandat 249.637 kb on - strandat 249.637 kb on - strandat 249.656 kb on + strandat 249.657 kb on - strandat 249.659 kb on - strandat 249.732 kb on + strand, within BACOVA_03492at 249.733 kb on - strand, within BACOVA_03492at 249.733 kb on - strand, within BACOVA_03492at 249.733 kb on - strand, within BACOVA_03492at 249.735 kb on - strand, within BACOVA_03492at 249.739 kb on + strand, within BACOVA_03492at 249.749 kb on + strand, within BACOVA_03492at 249.750 kb on - strand, within BACOVA_03492at 249.752 kb on + strand, within BACOVA_03492at 249.758 kb on + strand, within BACOVA_03492at 249.759 kb on - strand, within BACOVA_03492at 249.767 kb on + strand, within BACOVA_03492at 249.767 kb on + strand, within BACOVA_03492at 249.803 kb on - strand, within BACOVA_03492at 249.820 kb on + strand, within BACOVA_03492at 249.837 kb on + strand, within BACOVA_03492at 249.846 kb on - strand, within BACOVA_03492at 249.940 kb on - strand, within BACOVA_03492at 249.965 kb on - strand, within BACOVA_03492at 249.987 kb on + strand, within BACOVA_03492at 250.016 kb on + strand, within BACOVA_03492at 250.016 kb on + strand, within BACOVA_03492at 250.016 kb on + strand, within BACOVA_03492at 250.021 kb on + strand, within BACOVA_03492at 250.148 kb on + strand, within BACOVA_03492at 250.184 kb on + strand, within BACOVA_03492at 250.184 kb on + strand, within BACOVA_03492at 250.184 kb on + strand, within BACOVA_03492at 250.184 kb on + strand, within BACOVA_03492at 250.184 kb on + strand, within BACOVA_03492at 250.185 kb on - strand, within BACOVA_03492at 250.187 kb on - strand, within BACOVA_03492at 250.187 kb on - strand, within BACOVA_03492at 250.208 kb on + strand, within BACOVA_03492at 250.208 kb on + strand, within BACOVA_03492at 250.231 kb on + strand, within BACOVA_03492at 250.276 kb on + strand, within BACOVA_03492at 250.277 kb on - strand, within BACOVA_03492at 250.282 kb on + strand, within BACOVA_03492at 250.288 kb on + strand, within BACOVA_03492at 250.288 kb on + strand, within BACOVA_03492at 250.297 kb on + strand, within BACOVA_03492at 250.303 kb on - strand, within BACOVA_03492at 250.330 kb on + strand, within BACOVA_03492at 250.330 kb on + strand, within BACOVA_03492

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Per-strain Table

Position Strand Gene LocusTag Fraction amylopectin from maize 2.5 mg/ml (C)
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246,655 - BACOVA_03490 0.55 +0.1
246,656 - BACOVA_03490 0.55 -0.2
246,699 + BACOVA_03490 0.57 +1.4
246,723 + BACOVA_03490 0.58 +0.1
246,788 - BACOVA_03490 0.61 -0.2
246,788 - BACOVA_03490 0.61 +1.1
246,789 + BACOVA_03490 0.61 +0.4
246,790 - BACOVA_03490 0.61 -0.2
246,792 + BACOVA_03490 0.61 +0.1
246,793 - BACOVA_03490 0.61 -2.5
246,919 - BACOVA_03490 0.68 +0.1
246,931 + BACOVA_03490 0.68 +1.2
246,931 + BACOVA_03490 0.68 -0.4
246,936 + BACOVA_03490 0.69 +0.1
246,937 - BACOVA_03490 0.69 +0.6
247,033 + BACOVA_03490 0.73 +0.1
247,034 - BACOVA_03490 0.74 -1.7
247,152 + BACOVA_03490 0.79 +0.4
247,153 - BACOVA_03490 0.79 +0.7
247,153 - BACOVA_03490 0.79 -0.6
247,196 - BACOVA_03490 0.82 -0.3
247,239 + BACOVA_03490 0.84 +0.4
247,239 + BACOVA_03490 0.84 -1.6
247,248 + BACOVA_03490 0.84 +0.8
247,258 - BACOVA_03490 0.85 +1.2
247,324 + BACOVA_03490 0.88 -0.4
247,326 + BACOVA_03490 0.88 +0.8
247,326 + BACOVA_03490 0.88 +0.0
247,327 - BACOVA_03490 0.88 +0.0
247,327 - BACOVA_03490 0.88 -2.2
247,327 - BACOVA_03490 0.88 +0.2
247,327 - BACOVA_03490 0.88 -0.4
247,327 - BACOVA_03490 0.88 -2.9
247,332 - BACOVA_03490 0.88 -0.2
247,355 + BACOVA_03490 0.90 +0.7
247,377 + -2.0
247,409 + -0.9
247,412 - -1.0
247,454 - +0.4
247,503 + -1.4
247,562 - -1.7
247,603 + -1.4
247,604 - -0.3
247,604 - +0.6
247,649 + -0.2
247,649 + +0.4
247,653 + -2.8
247,653 + -1.2
247,654 - -0.8
247,654 - -1.5
247,654 - +0.5
247,657 + +1.0
247,793 - BACOVA_03491 0.10 +1.4
247,800 - BACOVA_03491 0.11 +0.6
247,800 - BACOVA_03491 0.11 +1.4
247,800 - BACOVA_03491 0.11 -1.3
247,801 + BACOVA_03491 0.11 +2.1
247,801 + BACOVA_03491 0.11 -0.3
247,801 + BACOVA_03491 0.11 -1.7
247,826 - BACOVA_03491 0.12 -2.3
247,830 + BACOVA_03491 0.13 +0.2
247,831 - BACOVA_03491 0.13 +0.8
247,844 + BACOVA_03491 0.13 -0.5
247,875 + BACOVA_03491 0.15 -1.7
247,876 - BACOVA_03491 0.15 -2.2
247,876 - BACOVA_03491 0.15 +1.2
247,929 + BACOVA_03491 0.18 +1.8
247,948 + BACOVA_03491 0.19 -2.3
248,017 + BACOVA_03491 0.23 -1.0
248,017 + BACOVA_03491 0.23 -1.4
248,018 - BACOVA_03491 0.23 +2.3
248,020 + BACOVA_03491 0.23 +0.8
248,021 - BACOVA_03491 0.24 +1.4
248,108 - BACOVA_03491 0.29 -1.8
248,111 + BACOVA_03491 0.29 -1.2
248,112 - BACOVA_03491 0.29 +1.0
248,112 - BACOVA_03491 0.29 -2.9
248,146 + BACOVA_03491 0.31 +2.8
248,190 + BACOVA_03491 0.33 +0.1
248,191 - BACOVA_03491 0.33 -0.1
248,191 - BACOVA_03491 0.33 -2.4
248,214 + BACOVA_03491 0.35 -2.0
248,247 - BACOVA_03491 0.37 -0.3
248,267 - BACOVA_03491 0.38 -0.2
248,282 + BACOVA_03491 0.39 +1.0
248,330 - BACOVA_03491 0.41 -2.2
248,387 - BACOVA_03491 0.45 -1.4
248,407 + BACOVA_03491 0.46 -1.8
248,493 + BACOVA_03491 0.51 +0.7
248,532 + BACOVA_03491 0.53 -0.4
248,532 + BACOVA_03491 0.53 +0.1
248,532 + BACOVA_03491 0.53 -0.6
248,532 + BACOVA_03491 0.53 +1.4
248,533 - BACOVA_03491 0.53 +0.0
248,564 + BACOVA_03491 0.55 -1.4
248,567 + BACOVA_03491 0.55 +0.1
248,567 + BACOVA_03491 0.55 -1.8
248,571 - BACOVA_03491 0.55 -0.6
248,661 - BACOVA_03491 0.60 -1.0
248,661 - BACOVA_03491 0.60 -1.9
248,661 - BACOVA_03491 0.60 -1.4
248,696 - BACOVA_03491 0.62 +2.4
248,703 + BACOVA_03491 0.63 +0.6
248,705 + BACOVA_03491 0.63 -0.6
248,705 + BACOVA_03491 0.63 +0.2
248,705 + BACOVA_03491 0.63 -0.2
248,706 - BACOVA_03491 0.63 -1.6
248,706 - BACOVA_03491 0.63 +0.6
248,706 - BACOVA_03491 0.63 -0.6
248,706 - BACOVA_03491 0.63 +0.5
248,732 + BACOVA_03491 0.65 +2.1
248,733 - BACOVA_03491 0.65 +3.2
248,733 - BACOVA_03491 0.65 -2.6
248,737 + BACOVA_03491 0.65 -0.2
248,738 - BACOVA_03491 0.65 -3.9
248,738 - BACOVA_03491 0.65 +0.4
248,745 - BACOVA_03491 0.65 +2.4
248,786 - BACOVA_03491 0.68 +0.8
248,837 + BACOVA_03491 0.71 +0.5
248,837 + BACOVA_03491 0.71 -0.6
248,839 + BACOVA_03491 0.71 -1.5
248,839 + BACOVA_03491 0.71 +2.4
248,840 - BACOVA_03491 0.71 -0.9
248,840 - BACOVA_03491 0.71 +2.7
248,895 - BACOVA_03491 0.74 +0.2
248,898 - BACOVA_03491 0.74 -0.0
248,916 + BACOVA_03491 0.75 -0.9
248,934 - BACOVA_03491 0.76 -2.0
248,934 - BACOVA_03491 0.76 -1.4
249,059 - BACOVA_03491 0.83 +2.1
249,059 - BACOVA_03491 0.83 +1.7
249,117 - BACOVA_03491 0.87 -2.9
249,117 - BACOVA_03491 0.87 -1.2
249,120 + BACOVA_03491 0.87 +1.4
249,153 - BACOVA_03491 0.89 +0.4
249,165 + BACOVA_03491 0.90 -0.2
249,165 + BACOVA_03491 0.90 -0.5
249,165 + BACOVA_03491 0.90 -0.1
249,165 + BACOVA_03491 0.90 -1.6
249,166 - BACOVA_03491 0.90 +0.9
249,166 - BACOVA_03491 0.90 +1.8
249,166 - BACOVA_03491 0.90 +0.8
249,166 - BACOVA_03491 0.90 -1.5
249,167 + BACOVA_03491 0.90 -1.2
249,168 - BACOVA_03491 0.90 -2.4
249,169 + BACOVA_03491 0.90 -0.4
249,239 + +1.1
249,240 - +2.6
249,241 + +0.4
249,254 + -0.9
249,255 - -1.8
249,283 + -0.7
249,297 + +0.8
249,298 - -2.4
249,298 - +0.5
249,303 + +0.8
249,305 + -2.4
249,305 + -1.9
249,306 - -0.8
249,307 + -1.5
249,307 + +0.3
249,307 + -1.0
249,307 + +0.8
249,404 - -0.5
249,407 - -1.5
249,408 + -0.4
249,409 - -0.3
249,409 - +0.1
249,448 + +0.4
249,448 + -2.0
249,448 + -2.2
249,452 - -2.0
249,456 + +3.2
249,456 + +1.4
249,462 + +0.1
249,482 + +0.2
249,499 - +0.3
249,500 + +0.1
249,501 - +0.0
249,501 - -2.5
249,501 - +0.8
249,523 + +1.5
249,536 - -0.7
249,556 + -0.8
249,568 + -2.4
249,593 - +0.1
249,599 - +0.7
249,601 - +0.4
249,603 + +2.2
249,604 - +0.1
249,606 + -1.4
249,619 + -2.6
249,620 - +3.3
249,627 + -3.4
249,637 - -0.5
249,637 - +0.4
249,656 + +0.8
249,657 - -0.2
249,659 - +0.2
249,732 + BACOVA_03492 0.16 +0.6
249,733 - BACOVA_03492 0.16 +0.3
249,733 - BACOVA_03492 0.16 -3.0
249,733 - BACOVA_03492 0.16 -1.9
249,735 - BACOVA_03492 0.16 -0.1
249,739 + BACOVA_03492 0.17 -0.2
249,749 + BACOVA_03492 0.18 +0.1
249,750 - BACOVA_03492 0.18 +0.7
249,752 + BACOVA_03492 0.18 +1.0
249,758 + BACOVA_03492 0.19 -0.3
249,759 - BACOVA_03492 0.19 -1.4
249,767 + BACOVA_03492 0.19 +0.4
249,767 + BACOVA_03492 0.19 -1.0
249,803 - BACOVA_03492 0.23 +0.5
249,820 + BACOVA_03492 0.25 +0.8
249,837 + BACOVA_03492 0.26 +0.6
249,846 - BACOVA_03492 0.27 +1.6
249,940 - BACOVA_03492 0.36 +0.9
249,965 - BACOVA_03492 0.38 +0.9
249,987 + BACOVA_03492 0.40 +1.4
250,016 + BACOVA_03492 0.43 -1.2
250,016 + BACOVA_03492 0.43 +1.0
250,016 + BACOVA_03492 0.43 +4.7
250,021 + BACOVA_03492 0.44 +0.1
250,148 + BACOVA_03492 0.56 +1.8
250,184 + BACOVA_03492 0.59 -3.8
250,184 + BACOVA_03492 0.59 +0.1
250,184 + BACOVA_03492 0.59 +0.8
250,184 + BACOVA_03492 0.59 -1.6
250,184 + BACOVA_03492 0.59 -1.1
250,185 - BACOVA_03492 0.59 -1.6
250,187 - BACOVA_03492 0.60 -0.8
250,187 - BACOVA_03492 0.60 -0.9
250,208 + BACOVA_03492 0.62 -2.3
250,208 + BACOVA_03492 0.62 -1.6
250,231 + BACOVA_03492 0.64 -0.2
250,276 + BACOVA_03492 0.68 -0.1
250,277 - BACOVA_03492 0.68 +1.4
250,282 + BACOVA_03492 0.69 -0.1
250,288 + BACOVA_03492 0.69 -1.6
250,288 + BACOVA_03492 0.69 -0.5
250,297 + BACOVA_03492 0.70 +0.1
250,303 - BACOVA_03492 0.71 -1.8
250,330 + BACOVA_03492 0.73 -1.7
250,330 + BACOVA_03492 0.73 -0.4

Or see this region's nucleotide sequence