Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03357

Experiment: amylopectin from maize 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03356 and BACOVA_03357 are separated by 98 nucleotidesBACOVA_03357 and BACOVA_03358 are separated by 119 nucleotides BACOVA_03356: BACOVA_03356 - hypothetical protein, at 52,264 to 53,283 _03356 BACOVA_03357: BACOVA_03357 - antioxidant, AhpC/TSA family, at 53,382 to 54,560 _03357 BACOVA_03358: BACOVA_03358 - peptidase dimerization domain protein, at 54,680 to 55,747 _03358 Position (kb) 53 54 55Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 52.414 kb on - strand, within BACOVA_03356at 52.414 kb on - strand, within BACOVA_03356at 52.444 kb on - strand, within BACOVA_03356at 52.481 kb on - strand, within BACOVA_03356at 52.497 kb on + strand, within BACOVA_03356at 52.524 kb on + strand, within BACOVA_03356at 52.540 kb on + strand, within BACOVA_03356at 52.541 kb on - strand, within BACOVA_03356at 52.541 kb on - strand, within BACOVA_03356at 52.543 kb on - strand, within BACOVA_03356at 52.543 kb on - strand, within BACOVA_03356at 52.565 kb on + strand, within BACOVA_03356at 52.565 kb on + strand, within BACOVA_03356at 52.625 kb on - strand, within BACOVA_03356at 52.625 kb on - strand, within BACOVA_03356at 52.647 kb on + strand, within BACOVA_03356at 52.686 kb on + strand, within BACOVA_03356at 52.707 kb on - strand, within BACOVA_03356at 52.786 kb on + strand, within BACOVA_03356at 52.790 kb on + strand, within BACOVA_03356at 52.792 kb on + strand, within BACOVA_03356at 52.792 kb on + strand, within BACOVA_03356at 52.793 kb on - strand, within BACOVA_03356at 52.793 kb on - strand, within BACOVA_03356at 52.804 kb on + strand, within BACOVA_03356at 52.808 kb on + strand, within BACOVA_03356at 52.822 kb on - strand, within BACOVA_03356at 52.822 kb on - strand, within BACOVA_03356at 52.826 kb on + strand, within BACOVA_03356at 52.826 kb on + strand, within BACOVA_03356at 52.826 kb on + strand, within BACOVA_03356at 52.827 kb on - strand, within BACOVA_03356at 52.827 kb on - strand, within BACOVA_03356at 52.832 kb on + strand, within BACOVA_03356at 52.833 kb on - strand, within BACOVA_03356at 52.893 kb on - strand, within BACOVA_03356at 52.893 kb on - strand, within BACOVA_03356at 52.937 kb on + strand, within BACOVA_03356at 52.937 kb on + strand, within BACOVA_03356at 52.938 kb on - strand, within BACOVA_03356at 52.949 kb on - strand, within BACOVA_03356at 52.969 kb on + strand, within BACOVA_03356at 52.970 kb on - strand, within BACOVA_03356at 52.970 kb on - strand, within BACOVA_03356at 52.970 kb on - strand, within BACOVA_03356at 52.970 kb on - strand, within BACOVA_03356at 52.973 kb on - strand, within BACOVA_03356at 52.975 kb on - strand, within BACOVA_03356at 52.986 kb on + strand, within BACOVA_03356at 53.017 kb on + strand, within BACOVA_03356at 53.018 kb on - strand, within BACOVA_03356at 53.020 kb on - strand, within BACOVA_03356at 53.086 kb on - strand, within BACOVA_03356at 53.089 kb on + strand, within BACOVA_03356at 53.095 kb on + strand, within BACOVA_03356at 53.141 kb on + strand, within BACOVA_03356at 53.141 kb on + strand, within BACOVA_03356at 53.146 kb on - strand, within BACOVA_03356at 53.191 kb on - strandat 53.209 kb on - strandat 53.216 kb on - strandat 53.225 kb on + strandat 53.225 kb on + strandat 53.226 kb on - strandat 53.275 kb on + strandat 53.315 kb on + strandat 53.316 kb on - strandat 53.352 kb on - strandat 53.365 kb on - strandat 53.390 kb on - strandat 53.390 kb on - strandat 53.406 kb on - strandat 53.406 kb on - strandat 53.412 kb on - strandat 53.414 kb on - strandat 53.484 kb on + strandat 53.576 kb on - strand, within BACOVA_03357at 53.592 kb on - strand, within BACOVA_03357at 53.592 kb on - strand, within BACOVA_03357at 53.601 kb on - strand, within BACOVA_03357at 53.603 kb on + strand, within BACOVA_03357at 53.610 kb on - strand, within BACOVA_03357at 53.626 kb on - strand, within BACOVA_03357at 53.708 kb on - strand, within BACOVA_03357at 53.741 kb on - strand, within BACOVA_03357at 53.744 kb on + strand, within BACOVA_03357at 53.772 kb on - strand, within BACOVA_03357at 53.831 kb on + strand, within BACOVA_03357at 53.834 kb on + strand, within BACOVA_03357at 53.869 kb on + strand, within BACOVA_03357at 53.869 kb on + strand, within BACOVA_03357at 53.905 kb on + strand, within BACOVA_03357at 53.950 kb on + strand, within BACOVA_03357at 53.950 kb on + strand, within BACOVA_03357at 53.963 kb on + strand, within BACOVA_03357at 53.964 kb on - strand, within BACOVA_03357at 53.967 kb on + strand, within BACOVA_03357at 53.970 kb on + strand, within BACOVA_03357at 53.970 kb on + strand, within BACOVA_03357at 53.971 kb on - strand, within BACOVA_03357at 53.971 kb on - strand, within BACOVA_03357at 53.980 kb on + strand, within BACOVA_03357at 53.988 kb on - strand, within BACOVA_03357at 54.039 kb on - strand, within BACOVA_03357at 54.152 kb on - strand, within BACOVA_03357at 54.223 kb on - strand, within BACOVA_03357at 54.226 kb on + strand, within BACOVA_03357at 54.226 kb on + strand, within BACOVA_03357at 54.227 kb on - strand, within BACOVA_03357at 54.227 kb on - strand, within BACOVA_03357at 54.240 kb on + strand, within BACOVA_03357at 54.241 kb on - strand, within BACOVA_03357at 54.241 kb on - strand, within BACOVA_03357at 54.247 kb on + strand, within BACOVA_03357at 54.248 kb on - strand, within BACOVA_03357at 54.250 kb on + strand, within BACOVA_03357at 54.250 kb on + strand, within BACOVA_03357at 54.347 kb on + strand, within BACOVA_03357at 54.350 kb on + strand, within BACOVA_03357at 54.356 kb on + strand, within BACOVA_03357at 54.358 kb on + strand, within BACOVA_03357at 54.359 kb on - strand, within BACOVA_03357at 54.359 kb on - strand, within BACOVA_03357at 54.362 kb on + strand, within BACOVA_03357at 54.443 kb on + strandat 54.444 kb on - strandat 54.444 kb on - strandat 54.444 kb on - strandat 54.444 kb on - strandat 54.444 kb on - strandat 54.445 kb on + strandat 54.445 kb on + strandat 54.445 kb on + strandat 54.445 kb on + strandat 54.446 kb on - strandat 54.446 kb on - strandat 54.446 kb on - strandat 54.446 kb on - strandat 54.446 kb on - strandat 54.446 kb on - strandat 54.447 kb on + strandat 54.448 kb on - strandat 54.453 kb on - strandat 54.456 kb on + strandat 54.457 kb on - strandat 54.507 kb on - strandat 54.515 kb on - strandat 54.515 kb on - strandat 54.567 kb on + strandat 54.567 kb on + strandat 54.567 kb on + strandat 54.575 kb on + strandat 54.590 kb on + strandat 54.591 kb on - strandat 54.648 kb on + strandat 54.666 kb on + strandat 54.666 kb on + strandat 54.667 kb on - strandat 54.667 kb on - strandat 54.675 kb on - strandat 54.675 kb on - strandat 54.681 kb on + strandat 54.701 kb on + strandat 54.708 kb on - strandat 54.816 kb on - strand, within BACOVA_03358at 54.868 kb on + strand, within BACOVA_03358at 54.949 kb on + strand, within BACOVA_03358at 54.950 kb on - strand, within BACOVA_03358at 54.950 kb on - strand, within BACOVA_03358at 55.138 kb on + strand, within BACOVA_03358at 55.148 kb on + strand, within BACOVA_03358at 55.160 kb on - strand, within BACOVA_03358at 55.160 kb on - strand, within BACOVA_03358at 55.160 kb on - strand, within BACOVA_03358at 55.217 kb on + strand, within BACOVA_03358at 55.217 kb on + strand, within BACOVA_03358at 55.218 kb on - strand, within BACOVA_03358at 55.221 kb on - strand, within BACOVA_03358at 55.275 kb on - strand, within BACOVA_03358at 55.359 kb on + strand, within BACOVA_03358at 55.360 kb on - strand, within BACOVA_03358at 55.391 kb on + strand, within BACOVA_03358at 55.391 kb on + strand, within BACOVA_03358at 55.410 kb on - strand, within BACOVA_03358at 55.441 kb on + strand, within BACOVA_03358at 55.442 kb on - strand, within BACOVA_03358at 55.457 kb on + strand, within BACOVA_03358at 55.457 kb on + strand, within BACOVA_03358at 55.458 kb on - strand, within BACOVA_03358at 55.458 kb on - strand, within BACOVA_03358at 55.507 kb on + strand, within BACOVA_03358at 55.526 kb on + strand, within BACOVA_03358at 55.538 kb on - strand, within BACOVA_03358at 55.547 kb on - strand, within BACOVA_03358at 55.547 kb on - strand, within BACOVA_03358

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Per-strain Table

Position Strand Gene LocusTag Fraction amylopectin from maize 2.5 mg/ml (C)
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52,414 - BACOVA_03356 0.15 +1.2
52,414 - BACOVA_03356 0.15 -1.5
52,444 - BACOVA_03356 0.18 -0.9
52,481 - BACOVA_03356 0.21 -1.4
52,497 + BACOVA_03356 0.23 -1.7
52,524 + BACOVA_03356 0.25 +2.4
52,540 + BACOVA_03356 0.27 -0.4
52,541 - BACOVA_03356 0.27 +2.4
52,541 - BACOVA_03356 0.27 -2.7
52,543 - BACOVA_03356 0.27 +0.7
52,543 - BACOVA_03356 0.27 -1.9
52,565 + BACOVA_03356 0.30 +0.4
52,565 + BACOVA_03356 0.30 +0.9
52,625 - BACOVA_03356 0.35 +1.6
52,625 - BACOVA_03356 0.35 -0.7
52,647 + BACOVA_03356 0.38 -0.4
52,686 + BACOVA_03356 0.41 +0.9
52,707 - BACOVA_03356 0.43 -0.4
52,786 + BACOVA_03356 0.51 -2.3
52,790 + BACOVA_03356 0.52 +0.9
52,792 + BACOVA_03356 0.52 +1.4
52,792 + BACOVA_03356 0.52 -1.1
52,793 - BACOVA_03356 0.52 -1.6
52,793 - BACOVA_03356 0.52 -1.5
52,804 + BACOVA_03356 0.53 -1.9
52,808 + BACOVA_03356 0.53 -1.6
52,822 - BACOVA_03356 0.55 +2.4
52,822 - BACOVA_03356 0.55 -0.7
52,826 + BACOVA_03356 0.55 +2.0
52,826 + BACOVA_03356 0.55 -0.4
52,826 + BACOVA_03356 0.55 +1.1
52,827 - BACOVA_03356 0.55 +0.9
52,827 - BACOVA_03356 0.55 +2.3
52,832 + BACOVA_03356 0.56 -1.7
52,833 - BACOVA_03356 0.56 +2.4
52,893 - BACOVA_03356 0.62 +0.5
52,893 - BACOVA_03356 0.62 -0.3
52,937 + BACOVA_03356 0.66 -1.7
52,937 + BACOVA_03356 0.66 +2.1
52,938 - BACOVA_03356 0.66 -0.4
52,949 - BACOVA_03356 0.67 -0.4
52,969 + BACOVA_03356 0.69 -2.3
52,970 - BACOVA_03356 0.69 -1.9
52,970 - BACOVA_03356 0.69 -0.3
52,970 - BACOVA_03356 0.69 +2.6
52,970 - BACOVA_03356 0.69 +0.4
52,973 - BACOVA_03356 0.70 -1.2
52,975 - BACOVA_03356 0.70 -0.3
52,986 + BACOVA_03356 0.71 +1.4
53,017 + BACOVA_03356 0.74 -1.4
53,018 - BACOVA_03356 0.74 -0.6
53,020 - BACOVA_03356 0.74 +0.1
53,086 - BACOVA_03356 0.81 +0.3
53,089 + BACOVA_03356 0.81 +0.9
53,095 + BACOVA_03356 0.81 -1.8
53,141 + BACOVA_03356 0.86 -2.4
53,141 + BACOVA_03356 0.86 -0.6
53,146 - BACOVA_03356 0.86 -1.3
53,191 - -2.3
53,209 - +0.1
53,216 - +0.1
53,225 + +1.3
53,225 + -2.1
53,226 - +2.2
53,275 + +1.4
53,315 + -0.1
53,316 - +0.4
53,352 - +2.4
53,365 - +0.4
53,390 - +1.4
53,390 - -2.4
53,406 - -0.6
53,406 - -0.1
53,412 - +2.4
53,414 - -1.2
53,484 + +0.3
53,576 - BACOVA_03357 0.16 -0.5
53,592 - BACOVA_03357 0.18 +0.1
53,592 - BACOVA_03357 0.18 -0.1
53,601 - BACOVA_03357 0.19 +0.9
53,603 + BACOVA_03357 0.19 -1.2
53,610 - BACOVA_03357 0.19 -1.3
53,626 - BACOVA_03357 0.21 +2.8
53,708 - BACOVA_03357 0.28 +1.7
53,741 - BACOVA_03357 0.30 +0.7
53,744 + BACOVA_03357 0.31 -1.0
53,772 - BACOVA_03357 0.33 -0.8
53,831 + BACOVA_03357 0.38 -0.9
53,834 + BACOVA_03357 0.38 +0.1
53,869 + BACOVA_03357 0.41 +0.6
53,869 + BACOVA_03357 0.41 +1.2
53,905 + BACOVA_03357 0.44 +1.9
53,950 + BACOVA_03357 0.48 -2.4
53,950 + BACOVA_03357 0.48 -0.1
53,963 + BACOVA_03357 0.49 -0.9
53,964 - BACOVA_03357 0.49 -0.9
53,967 + BACOVA_03357 0.50 -1.7
53,970 + BACOVA_03357 0.50 -0.1
53,970 + BACOVA_03357 0.50 -0.4
53,971 - BACOVA_03357 0.50 +2.2
53,971 - BACOVA_03357 0.50 +1.9
53,980 + BACOVA_03357 0.51 +0.4
53,988 - BACOVA_03357 0.51 +0.4
54,039 - BACOVA_03357 0.56 +1.4
54,152 - BACOVA_03357 0.65 +1.5
54,223 - BACOVA_03357 0.71 -2.0
54,226 + BACOVA_03357 0.72 +1.9
54,226 + BACOVA_03357 0.72 -0.1
54,227 - BACOVA_03357 0.72 -1.9
54,227 - BACOVA_03357 0.72 -0.7
54,240 + BACOVA_03357 0.73 +2.0
54,241 - BACOVA_03357 0.73 -0.6
54,241 - BACOVA_03357 0.73 -0.2
54,247 + BACOVA_03357 0.73 -1.7
54,248 - BACOVA_03357 0.73 -1.4
54,250 + BACOVA_03357 0.74 -0.2
54,250 + BACOVA_03357 0.74 -0.1
54,347 + BACOVA_03357 0.82 -2.8
54,350 + BACOVA_03357 0.82 +2.5
54,356 + BACOVA_03357 0.83 -1.2
54,358 + BACOVA_03357 0.83 +0.1
54,359 - BACOVA_03357 0.83 +0.9
54,359 - BACOVA_03357 0.83 +2.7
54,362 + BACOVA_03357 0.83 +1.1
54,443 + -1.4
54,444 - +0.6
54,444 - -0.1
54,444 - -0.9
54,444 - +1.1
54,444 - -0.0
54,445 + -0.7
54,445 + -3.4
54,445 + +1.6
54,445 + -0.9
54,446 - -0.3
54,446 - -1.8
54,446 - +1.4
54,446 - -0.6
54,446 - +2.2
54,446 - -1.3
54,447 + -1.0
54,448 - +0.1
54,453 - +2.4
54,456 + +0.8
54,457 - -1.6
54,507 - +3.3
54,515 - -0.0
54,515 - -0.6
54,567 + +0.7
54,567 + -0.6
54,567 + +1.2
54,575 + -0.7
54,590 + +0.9
54,591 - +0.5
54,648 + +2.3
54,666 + -0.6
54,666 + +0.1
54,667 - -0.6
54,667 - +3.9
54,675 - -2.3
54,675 - -0.6
54,681 + -0.6
54,701 + +0.1
54,708 - -0.9
54,816 - BACOVA_03358 0.13 -0.9
54,868 + BACOVA_03358 0.18 -0.7
54,949 + BACOVA_03358 0.25 -1.0
54,950 - BACOVA_03358 0.25 -2.1
54,950 - BACOVA_03358 0.25 -0.1
55,138 + BACOVA_03358 0.43 -2.0
55,148 + BACOVA_03358 0.44 -0.6
55,160 - BACOVA_03358 0.45 -0.1
55,160 - BACOVA_03358 0.45 +1.4
55,160 - BACOVA_03358 0.45 -0.4
55,217 + BACOVA_03358 0.50 -2.3
55,217 + BACOVA_03358 0.50 -1.7
55,218 - BACOVA_03358 0.50 -2.0
55,221 - BACOVA_03358 0.51 +0.1
55,275 - BACOVA_03358 0.56 -2.8
55,359 + BACOVA_03358 0.64 -2.8
55,360 - BACOVA_03358 0.64 -0.1
55,391 + BACOVA_03358 0.67 -1.1
55,391 + BACOVA_03358 0.67 -1.8
55,410 - BACOVA_03358 0.68 +0.4
55,441 + BACOVA_03358 0.71 -1.1
55,442 - BACOVA_03358 0.71 -1.4
55,457 + BACOVA_03358 0.73 -3.7
55,457 + BACOVA_03358 0.73 -1.5
55,458 - BACOVA_03358 0.73 +0.9
55,458 - BACOVA_03358 0.73 -0.1
55,507 + BACOVA_03358 0.77 -1.6
55,526 + BACOVA_03358 0.79 +2.4
55,538 - BACOVA_03358 0.80 +0.4
55,547 - BACOVA_03358 0.81 +0.1
55,547 - BACOVA_03358 0.81 +0.9

Or see this region's nucleotide sequence