Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03242

Experiment: amylopectin from maize 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03240 and BACOVA_03241 are separated by 23 nucleotidesBACOVA_03241 and BACOVA_03242 are separated by 142 nucleotidesBACOVA_03242 and BACOVA_03243 are separated by 331 nucleotidesBACOVA_03243 and BACOVA_03244 overlap by 4 nucleotidesBACOVA_03244 and BACOVA_03245 are separated by 20 nucleotidesBACOVA_03245 and BACOVA_03246 are separated by 35 nucleotides BACOVA_03240: BACOVA_03240 - outer membrane efflux protein, at 332,733 to 334,103 _03240 BACOVA_03241: BACOVA_03241 - hypothetical protein, at 334,127 to 334,372 _03241 BACOVA_03242: BACOVA_03242 - putative DNA-binding protein, at 334,515 to 334,994 _03242 BACOVA_03243: BACOVA_03243 - hypothetical protein, at 335,326 to 335,592 _03243 BACOVA_03244: BACOVA_03244 - hypothetical protein, at 335,589 to 335,723 _03244 BACOVA_03245: BACOVA_03245 - hypothetical protein, at 335,744 to 335,947 _03245 BACOVA_03246: BACOVA_03246 - putative DNA-binding protein, at 335,983 to 336,582 _03246 Position (kb) 334 335Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 333.554 kb on + strand, within BACOVA_03240at 333.627 kb on - strand, within BACOVA_03240at 333.634 kb on + strand, within BACOVA_03240at 333.635 kb on - strand, within BACOVA_03240at 333.659 kb on + strand, within BACOVA_03240at 333.663 kb on + strand, within BACOVA_03240at 333.664 kb on - strand, within BACOVA_03240at 333.664 kb on - strand, within BACOVA_03240at 333.664 kb on - strand, within BACOVA_03240at 333.777 kb on - strand, within BACOVA_03240at 333.781 kb on + strand, within BACOVA_03240at 333.781 kb on + strand, within BACOVA_03240at 333.873 kb on - strand, within BACOVA_03240at 333.873 kb on - strand, within BACOVA_03240at 333.990 kb on + strandat 333.991 kb on - strandat 334.023 kb on + strandat 334.056 kb on + strandat 334.056 kb on + strandat 334.057 kb on - strandat 334.065 kb on + strandat 334.066 kb on - strandat 334.066 kb on - strandat 334.074 kb on + strandat 334.075 kb on - strandat 334.105 kb on - strandat 334.160 kb on + strand, within BACOVA_03241at 334.175 kb on - strand, within BACOVA_03241at 334.187 kb on - strand, within BACOVA_03241at 334.235 kb on + strand, within BACOVA_03241at 334.257 kb on - strand, within BACOVA_03241at 334.257 kb on - strand, within BACOVA_03241at 334.279 kb on + strand, within BACOVA_03241at 334.279 kb on + strand, within BACOVA_03241at 334.279 kb on + strand, within BACOVA_03241at 334.298 kb on - strand, within BACOVA_03241at 334.379 kb on - strandat 334.384 kb on - strandat 334.401 kb on + strandat 334.402 kb on - strandat 334.408 kb on - strandat 334.439 kb on - strandat 334.497 kb on - strandat 334.516 kb on + strandat 334.517 kb on - strandat 334.637 kb on + strand, within BACOVA_03242at 334.638 kb on - strand, within BACOVA_03242at 334.641 kb on + strand, within BACOVA_03242at 334.642 kb on - strand, within BACOVA_03242at 334.703 kb on + strand, within BACOVA_03242at 334.830 kb on + strand, within BACOVA_03242at 334.869 kb on - strand, within BACOVA_03242at 334.927 kb on - strand, within BACOVA_03242at 334.931 kb on - strand, within BACOVA_03242at 334.931 kb on - strand, within BACOVA_03242at 334.982 kb on - strandat 334.985 kb on + strandat 334.986 kb on - strandat 335.028 kb on + strandat 335.061 kb on - strandat 335.063 kb on + strandat 335.064 kb on - strandat 335.098 kb on + strandat 335.098 kb on + strandat 335.098 kb on + strandat 335.105 kb on - strandat 335.109 kb on - strandat 335.162 kb on + strandat 335.163 kb on - strandat 335.164 kb on + strandat 335.193 kb on + strandat 335.193 kb on + strandat 335.194 kb on - strandat 335.244 kb on - strandat 335.279 kb on - strandat 335.288 kb on - strandat 335.293 kb on + strandat 335.294 kb on - strandat 335.294 kb on - strandat 335.298 kb on - strandat 335.300 kb on + strandat 335.310 kb on + strandat 335.314 kb on - strandat 335.314 kb on - strandat 335.314 kb on - strandat 335.320 kb on - strandat 335.321 kb on + strandat 335.321 kb on + strandat 335.326 kb on - strandat 335.330 kb on + strandat 335.330 kb on + strandat 335.330 kb on + strandat 335.330 kb on + strandat 335.330 kb on + strandat 335.330 kb on + strandat 335.331 kb on - strandat 335.430 kb on + strand, within BACOVA_03243at 335.431 kb on - strand, within BACOVA_03243at 335.437 kb on + strand, within BACOVA_03243at 335.440 kb on - strand, within BACOVA_03243at 335.464 kb on - strand, within BACOVA_03243at 335.480 kb on + strand, within BACOVA_03243at 335.480 kb on + strand, within BACOVA_03243at 335.480 kb on + strand, within BACOVA_03243at 335.518 kb on + strand, within BACOVA_03243at 335.518 kb on + strand, within BACOVA_03243at 335.518 kb on + strand, within BACOVA_03243at 335.530 kb on - strand, within BACOVA_03243at 335.537 kb on + strand, within BACOVA_03243at 335.538 kb on - strand, within BACOVA_03243at 335.567 kb on - strandat 335.589 kb on - strandat 335.598 kb on + strandat 335.598 kb on + strandat 335.607 kb on - strand, within BACOVA_03244at 335.607 kb on - strand, within BACOVA_03244at 335.610 kb on - strand, within BACOVA_03244at 335.620 kb on + strand, within BACOVA_03244at 335.621 kb on - strand, within BACOVA_03244at 335.717 kb on + strandat 335.718 kb on - strandat 335.721 kb on + strandat 335.722 kb on - strandat 335.722 kb on - strandat 335.722 kb on - strandat 335.744 kb on - strandat 335.748 kb on + strandat 335.749 kb on - strandat 335.754 kb on + strandat 335.755 kb on - strandat 335.755 kb on - strandat 335.755 kb on - strandat 335.755 kb on - strandat 335.758 kb on - strandat 335.758 kb on - strandat 335.760 kb on + strandat 335.771 kb on + strand, within BACOVA_03245at 335.771 kb on + strand, within BACOVA_03245at 335.810 kb on - strand, within BACOVA_03245at 335.840 kb on + strand, within BACOVA_03245at 335.840 kb on + strand, within BACOVA_03245at 335.842 kb on + strand, within BACOVA_03245at 335.843 kb on - strand, within BACOVA_03245at 335.843 kb on - strand, within BACOVA_03245at 335.845 kb on + strand, within BACOVA_03245at 335.845 kb on + strand, within BACOVA_03245at 335.845 kb on + strand, within BACOVA_03245at 335.845 kb on + strand, within BACOVA_03245at 335.846 kb on - strand, within BACOVA_03245at 335.846 kb on - strand, within BACOVA_03245at 335.848 kb on + strand, within BACOVA_03245at 335.853 kb on + strand, within BACOVA_03245at 335.853 kb on + strand, within BACOVA_03245at 335.853 kb on + strand, within BACOVA_03245at 335.854 kb on - strand, within BACOVA_03245at 335.854 kb on - strand, within BACOVA_03245at 335.855 kb on + strand, within BACOVA_03245at 335.855 kb on + strand, within BACOVA_03245at 335.856 kb on - strand, within BACOVA_03245at 335.889 kb on + strand, within BACOVA_03245at 335.906 kb on + strand, within BACOVA_03245at 335.907 kb on - strand, within BACOVA_03245at 335.945 kb on + strandat 335.946 kb on - strandat 335.963 kb on + strandat 335.964 kb on - strandat 335.985 kb on - strandat 335.986 kb on + strandat 335.987 kb on - strandat 335.987 kb on - strandat 335.992 kb on + strandat 335.992 kb on + strandat 335.994 kb on + strandat 335.994 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction amylopectin from maize 2.5 mg/ml (C)
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333,554 + BACOVA_03240 0.60 -0.1
333,627 - BACOVA_03240 0.65 -1.2
333,634 + BACOVA_03240 0.66 +0.0
333,635 - BACOVA_03240 0.66 +0.6
333,659 + BACOVA_03240 0.68 -0.4
333,663 + BACOVA_03240 0.68 -1.1
333,664 - BACOVA_03240 0.68 -1.0
333,664 - BACOVA_03240 0.68 -0.9
333,664 - BACOVA_03240 0.68 +2.4
333,777 - BACOVA_03240 0.76 +1.0
333,781 + BACOVA_03240 0.76 +1.5
333,781 + BACOVA_03240 0.76 -2.0
333,873 - BACOVA_03240 0.83 -0.5
333,873 - BACOVA_03240 0.83 +0.4
333,990 + -0.2
333,991 - -0.8
334,023 + +0.0
334,056 + +0.8
334,056 + +2.1
334,057 - -1.7
334,065 + -1.3
334,066 - -0.8
334,066 - +0.2
334,074 + +0.1
334,075 - +0.4
334,105 - +1.5
334,160 + BACOVA_03241 0.13 -0.0
334,175 - BACOVA_03241 0.20 +0.4
334,187 - BACOVA_03241 0.24 -0.5
334,235 + BACOVA_03241 0.44 -0.4
334,257 - BACOVA_03241 0.53 -0.2
334,257 - BACOVA_03241 0.53 -1.5
334,279 + BACOVA_03241 0.62 +0.2
334,279 + BACOVA_03241 0.62 -1.2
334,279 + BACOVA_03241 0.62 -0.3
334,298 - BACOVA_03241 0.70 -0.2
334,379 - -0.2
334,384 - +0.1
334,401 + -0.2
334,402 - -0.4
334,408 - -1.9
334,439 - -1.1
334,497 - -2.3
334,516 + +0.1
334,517 - +1.0
334,637 + BACOVA_03242 0.25 -1.2
334,638 - BACOVA_03242 0.26 +0.1
334,641 + BACOVA_03242 0.26 -1.3
334,642 - BACOVA_03242 0.26 +0.4
334,703 + BACOVA_03242 0.39 +0.4
334,830 + BACOVA_03242 0.66 -0.3
334,869 - BACOVA_03242 0.74 -0.9
334,927 - BACOVA_03242 0.86 +0.4
334,931 - BACOVA_03242 0.87 +1.8
334,931 - BACOVA_03242 0.87 +1.8
334,982 - +3.0
334,985 + -1.1
334,986 - -0.2
335,028 + -1.7
335,061 - -0.8
335,063 + +0.4
335,064 - +0.0
335,098 + -1.4
335,098 + +0.9
335,098 + -0.2
335,105 - -0.4
335,109 - -2.2
335,162 + -0.6
335,163 - +1.4
335,164 + +0.8
335,193 + -1.1
335,193 + -0.2
335,194 - +0.4
335,244 - +2.7
335,279 - -0.2
335,288 - -0.7
335,293 + -2.1
335,294 - +0.6
335,294 - -0.4
335,298 - -0.7
335,300 + +1.1
335,310 + -2.1
335,314 - -1.3
335,314 - -0.9
335,314 - -3.0
335,320 - +0.0
335,321 + +0.8
335,321 + +0.6
335,326 - +0.0
335,330 + +0.8
335,330 + -0.6
335,330 + -1.5
335,330 + -0.4
335,330 + -0.7
335,330 + +0.4
335,331 - -0.3
335,430 + BACOVA_03243 0.39 +1.4
335,431 - BACOVA_03243 0.39 +0.5
335,437 + BACOVA_03243 0.42 +1.4
335,440 - BACOVA_03243 0.43 +1.4
335,464 - BACOVA_03243 0.52 +0.2
335,480 + BACOVA_03243 0.58 +0.3
335,480 + BACOVA_03243 0.58 -0.7
335,480 + BACOVA_03243 0.58 -2.1
335,518 + BACOVA_03243 0.72 -0.1
335,518 + BACOVA_03243 0.72 -0.2
335,518 + BACOVA_03243 0.72 +0.6
335,530 - BACOVA_03243 0.76 +1.4
335,537 + BACOVA_03243 0.79 -0.4
335,538 - BACOVA_03243 0.79 -1.4
335,567 - -0.1
335,589 - -1.8
335,598 + +0.6
335,598 + -0.9
335,607 - BACOVA_03244 0.13 -0.9
335,607 - BACOVA_03244 0.13 -0.0
335,610 - BACOVA_03244 0.16 -0.3
335,620 + BACOVA_03244 0.23 +0.0
335,621 - BACOVA_03244 0.24 -0.8
335,717 + -1.7
335,718 - +1.4
335,721 + -0.8
335,722 - -1.4
335,722 - +0.0
335,722 - -0.1
335,744 - -2.2
335,748 + -0.6
335,749 - +2.4
335,754 + -1.0
335,755 - -0.8
335,755 - -0.7
335,755 - +1.4
335,755 - -0.6
335,758 - -1.1
335,758 - -1.0
335,760 + -2.3
335,771 + BACOVA_03245 0.13 +0.8
335,771 + BACOVA_03245 0.13 +2.4
335,810 - BACOVA_03245 0.32 -0.4
335,840 + BACOVA_03245 0.47 -0.8
335,840 + BACOVA_03245 0.47 -0.4
335,842 + BACOVA_03245 0.48 -0.4
335,843 - BACOVA_03245 0.49 -0.4
335,843 - BACOVA_03245 0.49 -0.8
335,845 + BACOVA_03245 0.50 +0.9
335,845 + BACOVA_03245 0.50 +1.4
335,845 + BACOVA_03245 0.50 +1.4
335,845 + BACOVA_03245 0.50 +3.2
335,846 - BACOVA_03245 0.50 -0.4
335,846 - BACOVA_03245 0.50 -0.3
335,848 + BACOVA_03245 0.51 +1.4
335,853 + BACOVA_03245 0.53 +0.3
335,853 + BACOVA_03245 0.53 -1.9
335,853 + BACOVA_03245 0.53 +2.3
335,854 - BACOVA_03245 0.54 +0.8
335,854 - BACOVA_03245 0.54 +0.0
335,855 + BACOVA_03245 0.54 -0.6
335,855 + BACOVA_03245 0.54 +0.0
335,856 - BACOVA_03245 0.55 -1.0
335,889 + BACOVA_03245 0.71 +3.8
335,906 + BACOVA_03245 0.79 +0.0
335,907 - BACOVA_03245 0.80 -0.2
335,945 + +0.0
335,946 - +0.4
335,963 + -0.6
335,964 - -2.5
335,985 - +1.4
335,986 + -0.6
335,987 - +1.1
335,987 - +2.2
335,992 + +0.6
335,992 + -2.1
335,994 + -0.4
335,994 + +0.6

Or see this region's nucleotide sequence