Experiment: amylopectin from maize 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02789 and BACOVA_02790 are separated by 90 nucleotides BACOVA_02790 and BACOVA_02791 are separated by 15 nucleotides
BACOVA_02789: BACOVA_02789 - hypothetical protein, at 243,735 to 244,868
_02789
BACOVA_02790: BACOVA_02790 - hypothetical protein, at 244,959 to 245,096
_02790
BACOVA_02791: BACOVA_02791 - hypothetical protein, at 245,112 to 246,839
_02791
Position (kb) 244
245
246 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 244.083 kb on - strand, within BACOVA_02789 at 244.140 kb on - strand, within BACOVA_02789 at 244.199 kb on + strand, within BACOVA_02789 at 244.199 kb on + strand, within BACOVA_02789 at 244.200 kb on - strand, within BACOVA_02789 at 244.228 kb on + strand, within BACOVA_02789 at 244.237 kb on - strand, within BACOVA_02789 at 244.252 kb on + strand, within BACOVA_02789 at 244.253 kb on - strand, within BACOVA_02789 at 244.253 kb on - strand, within BACOVA_02789 at 244.271 kb on + strand, within BACOVA_02789 at 244.272 kb on - strand, within BACOVA_02789 at 244.328 kb on + strand, within BACOVA_02789 at 244.337 kb on + strand, within BACOVA_02789 at 244.413 kb on + strand, within BACOVA_02789 at 244.414 kb on - strand, within BACOVA_02789 at 244.449 kb on - strand, within BACOVA_02789 at 244.484 kb on - strand, within BACOVA_02789 at 244.512 kb on + strand, within BACOVA_02789 at 244.513 kb on - strand, within BACOVA_02789 at 244.516 kb on + strand, within BACOVA_02789 at 244.516 kb on + strand, within BACOVA_02789 at 244.516 kb on + strand, within BACOVA_02789 at 244.517 kb on - strand, within BACOVA_02789 at 244.529 kb on + strand, within BACOVA_02789 at 244.530 kb on - strand, within BACOVA_02789 at 244.538 kb on - strand, within BACOVA_02789 at 244.539 kb on + strand, within BACOVA_02789 at 244.540 kb on - strand, within BACOVA_02789 at 244.542 kb on - strand, within BACOVA_02789 at 244.724 kb on + strand, within BACOVA_02789 at 244.741 kb on + strand, within BACOVA_02789 at 244.741 kb on + strand, within BACOVA_02789 at 244.741 kb on + strand, within BACOVA_02789 at 244.742 kb on - strand, within BACOVA_02789 at 244.742 kb on - strand, within BACOVA_02789 at 244.867 kb on - strand at 244.873 kb on + strand at 244.895 kb on - strand at 244.900 kb on + strand at 244.901 kb on - strand at 244.901 kb on - strand at 244.930 kb on + strand at 244.948 kb on - strand at 244.956 kb on + strand at 244.990 kb on + strand, within BACOVA_02790 at 244.991 kb on - strand, within BACOVA_02790 at 244.991 kb on - strand, within BACOVA_02790 at 245.058 kb on + strand, within BACOVA_02790 at 245.074 kb on + strand, within BACOVA_02790 at 245.085 kb on + strand at 245.111 kb on + strand at 245.111 kb on + strand at 245.190 kb on - strand at 245.617 kb on - strand, within BACOVA_02791
Per-strain Table
Position Strand Gene LocusTag Fraction amylopectin from maize 2.5 mg/ml (C) remove 244,083 - BACOVA_02789 0.31 -1.5 244,140 - BACOVA_02789 0.36 -0.3 244,199 + BACOVA_02789 0.41 -1.1 244,199 + BACOVA_02789 0.41 -0.2 244,200 - BACOVA_02789 0.41 -1.8 244,228 + BACOVA_02789 0.43 -0.6 244,237 - BACOVA_02789 0.44 -1.0 244,252 + BACOVA_02789 0.46 -2.2 244,253 - BACOVA_02789 0.46 -1.9 244,253 - BACOVA_02789 0.46 +0.2 244,271 + BACOVA_02789 0.47 -0.2 244,272 - BACOVA_02789 0.47 +0.4 244,328 + BACOVA_02789 0.52 -0.6 244,337 + BACOVA_02789 0.53 -1.7 244,413 + BACOVA_02789 0.60 +0.6 244,414 - BACOVA_02789 0.60 +1.3 244,449 - BACOVA_02789 0.63 +0.8 244,484 - BACOVA_02789 0.66 -0.2 244,512 + BACOVA_02789 0.69 -1.5 244,513 - BACOVA_02789 0.69 -0.7 244,516 + BACOVA_02789 0.69 -2.2 244,516 + BACOVA_02789 0.69 -0.8 244,516 + BACOVA_02789 0.69 +0.7 244,517 - BACOVA_02789 0.69 +0.6 244,529 + BACOVA_02789 0.70 +0.1 244,530 - BACOVA_02789 0.70 -0.6 244,538 - BACOVA_02789 0.71 -1.0 244,539 + BACOVA_02789 0.71 +0.5 244,540 - BACOVA_02789 0.71 +1.2 244,542 - BACOVA_02789 0.71 -0.7 244,724 + BACOVA_02789 0.87 -0.9 244,741 + BACOVA_02789 0.89 +0.4 244,741 + BACOVA_02789 0.89 -1.6 244,741 + BACOVA_02789 0.89 -2.1 244,742 - BACOVA_02789 0.89 -1.1 244,742 - BACOVA_02789 0.89 +0.9 244,867 - -1.4 244,873 + -0.0 244,895 - -0.1 244,900 + +2.2 244,901 - -1.3 244,901 - +1.3 244,930 + -1.1 244,948 - -1.2 244,956 + -1.3 244,990 + BACOVA_02790 0.22 -1.5 244,991 - BACOVA_02790 0.23 +0.1 244,991 - BACOVA_02790 0.23 +1.4 245,058 + BACOVA_02790 0.72 +0.4 245,074 + BACOVA_02790 0.83 -0.4 245,085 + -2.8 245,111 + -1.2 245,111 + +0.4 245,190 - -0.7 245,617 - BACOVA_02791 0.29 +0.1
Or see this region's nucleotide sequence