Experiment: amylopectin from maize 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02292 and BACOVA_02293 are separated by 471 nucleotides BACOVA_02293 and BACOVA_02294 overlap by 4 nucleotides BACOVA_02294 and BACOVA_02295 are separated by 76 nucleotides
BACOVA_02292: BACOVA_02292 - hypothetical protein, at 62,786 to 63,763
_02292
BACOVA_02293: BACOVA_02293 - hypothetical protein, at 64,235 to 64,834
_02293
BACOVA_02294: BACOVA_02294 - hypothetical protein, at 64,831 to 65,604
_02294
BACOVA_02295: BACOVA_02295 - hypothetical protein, at 65,681 to 65,809
_02295
Position (kb) 64
65 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 63.316 kb on + strand, within BACOVA_02292 at 63.322 kb on - strand, within BACOVA_02292 at 63.324 kb on - strand, within BACOVA_02292 at 63.324 kb on - strand, within BACOVA_02292 at 63.388 kb on + strand, within BACOVA_02292 at 63.443 kb on + strand, within BACOVA_02292 at 63.443 kb on + strand, within BACOVA_02292 at 63.486 kb on + strand, within BACOVA_02292 at 63.486 kb on + strand, within BACOVA_02292 at 63.517 kb on - strand, within BACOVA_02292 at 63.573 kb on - strand, within BACOVA_02292 at 63.574 kb on + strand, within BACOVA_02292 at 63.575 kb on - strand, within BACOVA_02292 at 63.575 kb on - strand, within BACOVA_02292 at 63.597 kb on + strand, within BACOVA_02292 at 63.597 kb on + strand, within BACOVA_02292 at 63.598 kb on - strand, within BACOVA_02292 at 63.598 kb on - strand, within BACOVA_02292 at 63.598 kb on - strand, within BACOVA_02292 at 63.598 kb on - strand, within BACOVA_02292 at 63.598 kb on - strand, within BACOVA_02292 at 63.598 kb on - strand, within BACOVA_02292 at 63.666 kb on - strand at 63.682 kb on - strand at 63.702 kb on + strand at 63.707 kb on - strand at 63.707 kb on - strand at 63.707 kb on - strand at 63.718 kb on + strand at 63.743 kb on - strand at 63.748 kb on - strand at 63.748 kb on - strand at 63.748 kb on - strand at 63.748 kb on - strand at 63.812 kb on - strand at 63.879 kb on + strand at 63.894 kb on - strand at 63.937 kb on + strand at 63.938 kb on - strand at 63.938 kb on - strand at 63.941 kb on + strand at 63.965 kb on + strand at 63.980 kb on + strand at 63.980 kb on + strand at 64.022 kb on - strand at 64.143 kb on - strand at 64.159 kb on - strand at 64.231 kb on + strand at 64.235 kb on - strand at 64.235 kb on - strand at 64.266 kb on + strand at 64.266 kb on + strand at 64.288 kb on + strand at 64.309 kb on + strand, within BACOVA_02293 at 64.321 kb on - strand, within BACOVA_02293 at 64.355 kb on - strand, within BACOVA_02293 at 64.378 kb on - strand, within BACOVA_02293 at 64.378 kb on - strand, within BACOVA_02293 at 64.381 kb on + strand, within BACOVA_02293 at 64.382 kb on - strand, within BACOVA_02293 at 64.383 kb on + strand, within BACOVA_02293 at 64.450 kb on + strand, within BACOVA_02293 at 64.490 kb on + strand, within BACOVA_02293 at 64.490 kb on + strand, within BACOVA_02293 at 64.491 kb on - strand, within BACOVA_02293 at 64.528 kb on + strand, within BACOVA_02293 at 64.528 kb on + strand, within BACOVA_02293 at 64.529 kb on - strand, within BACOVA_02293 at 64.608 kb on - strand, within BACOVA_02293 at 64.612 kb on + strand, within BACOVA_02293 at 64.648 kb on + strand, within BACOVA_02293 at 64.648 kb on + strand, within BACOVA_02293 at 64.651 kb on + strand, within BACOVA_02293 at 64.651 kb on + strand, within BACOVA_02293 at 64.734 kb on + strand, within BACOVA_02293 at 64.811 kb on + strand at 64.812 kb on - strand at 64.814 kb on - strand at 64.816 kb on - strand at 64.816 kb on - strand at 64.970 kb on + strand, within BACOVA_02294 at 64.994 kb on + strand, within BACOVA_02294 at 65.001 kb on + strand, within BACOVA_02294 at 65.001 kb on + strand, within BACOVA_02294 at 65.002 kb on - strand, within BACOVA_02294 at 65.002 kb on - strand, within BACOVA_02294 at 65.005 kb on + strand, within BACOVA_02294 at 65.005 kb on + strand, within BACOVA_02294 at 65.006 kb on - strand, within BACOVA_02294 at 65.006 kb on - strand, within BACOVA_02294 at 65.006 kb on - strand, within BACOVA_02294 at 65.031 kb on + strand, within BACOVA_02294 at 65.052 kb on + strand, within BACOVA_02294 at 65.052 kb on + strand, within BACOVA_02294 at 65.086 kb on - strand, within BACOVA_02294 at 65.133 kb on + strand, within BACOVA_02294 at 65.146 kb on + strand, within BACOVA_02294 at 65.201 kb on - strand, within BACOVA_02294 at 65.201 kb on - strand, within BACOVA_02294 at 65.205 kb on + strand, within BACOVA_02294 at 65.205 kb on + strand, within BACOVA_02294 at 65.244 kb on - strand, within BACOVA_02294 at 65.256 kb on + strand, within BACOVA_02294 at 65.321 kb on + strand, within BACOVA_02294 at 65.325 kb on + strand, within BACOVA_02294 at 65.325 kb on + strand, within BACOVA_02294 at 65.326 kb on - strand, within BACOVA_02294 at 65.336 kb on + strand, within BACOVA_02294 at 65.336 kb on + strand, within BACOVA_02294 at 65.337 kb on - strand, within BACOVA_02294 at 65.347 kb on - strand, within BACOVA_02294 at 65.347 kb on - strand, within BACOVA_02294 at 65.365 kb on - strand, within BACOVA_02294 at 65.385 kb on + strand, within BACOVA_02294 at 65.429 kb on + strand, within BACOVA_02294 at 65.467 kb on - strand, within BACOVA_02294 at 65.469 kb on + strand, within BACOVA_02294 at 65.470 kb on - strand, within BACOVA_02294 at 65.483 kb on + strand, within BACOVA_02294 at 65.490 kb on + strand, within BACOVA_02294 at 65.490 kb on + strand, within BACOVA_02294 at 65.545 kb on - strand at 65.578 kb on + strand at 65.592 kb on + strand at 65.593 kb on - strand at 65.594 kb on + strand at 65.594 kb on + strand at 65.597 kb on + strand at 65.606 kb on - strand at 65.628 kb on + strand at 65.629 kb on - strand at 65.683 kb on - strand at 65.704 kb on + strand, within BACOVA_02295 at 65.705 kb on - strand, within BACOVA_02295
Per-strain Table
Position Strand Gene LocusTag Fraction amylopectin from maize 2.5 mg/ml (C) remove 63,316 + BACOVA_02292 0.54 -0.7 63,322 - BACOVA_02292 0.55 +0.1 63,324 - BACOVA_02292 0.55 +0.6 63,324 - BACOVA_02292 0.55 -2.0 63,388 + BACOVA_02292 0.62 -0.2 63,443 + BACOVA_02292 0.67 +0.1 63,443 + BACOVA_02292 0.67 -2.9 63,486 + BACOVA_02292 0.72 -1.4 63,486 + BACOVA_02292 0.72 -1.6 63,517 - BACOVA_02292 0.75 -1.4 63,573 - BACOVA_02292 0.80 +1.1 63,574 + BACOVA_02292 0.81 +0.9 63,575 - BACOVA_02292 0.81 -1.4 63,575 - BACOVA_02292 0.81 +0.1 63,597 + BACOVA_02292 0.83 -0.7 63,597 + BACOVA_02292 0.83 +1.5 63,598 - BACOVA_02292 0.83 -1.0 63,598 - BACOVA_02292 0.83 -1.0 63,598 - BACOVA_02292 0.83 -2.1 63,598 - BACOVA_02292 0.83 +1.7 63,598 - BACOVA_02292 0.83 -1.4 63,598 - BACOVA_02292 0.83 -1.1 63,666 - +0.5 63,682 - +2.1 63,702 + -0.4 63,707 - -2.4 63,707 - +0.1 63,707 - -1.8 63,718 + +0.3 63,743 - -0.9 63,748 - +1.6 63,748 - +1.0 63,748 - +3.3 63,748 - +2.1 63,812 - -0.9 63,879 + -1.4 63,894 - +0.6 63,937 + +0.8 63,938 - -1.0 63,938 - -0.5 63,941 + +1.9 63,965 + +0.1 63,980 + -0.6 63,980 + -0.4 64,022 - +0.3 64,143 - -0.4 64,159 - -0.8 64,231 + -1.5 64,235 - -0.2 64,235 - +0.1 64,266 + -0.3 64,266 + -0.7 64,288 + -1.9 64,309 + BACOVA_02293 0.12 -0.2 64,321 - BACOVA_02293 0.14 -1.8 64,355 - BACOVA_02293 0.20 +0.5 64,378 - BACOVA_02293 0.24 -0.1 64,378 - BACOVA_02293 0.24 +1.5 64,381 + BACOVA_02293 0.24 +2.4 64,382 - BACOVA_02293 0.24 -3.0 64,383 + BACOVA_02293 0.25 -1.7 64,450 + BACOVA_02293 0.36 -0.5 64,490 + BACOVA_02293 0.42 +2.0 64,490 + BACOVA_02293 0.42 +0.5 64,491 - BACOVA_02293 0.43 -0.2 64,528 + BACOVA_02293 0.49 -1.9 64,528 + BACOVA_02293 0.49 -0.4 64,529 - BACOVA_02293 0.49 -0.5 64,608 - BACOVA_02293 0.62 -1.0 64,612 + BACOVA_02293 0.63 -1.0 64,648 + BACOVA_02293 0.69 -1.5 64,648 + BACOVA_02293 0.69 -0.7 64,651 + BACOVA_02293 0.69 +0.5 64,651 + BACOVA_02293 0.69 +0.1 64,734 + BACOVA_02293 0.83 +0.0 64,811 + -0.6 64,812 - -1.5 64,814 - +0.8 64,816 - +3.2 64,816 - -2.1 64,970 + BACOVA_02294 0.18 +0.1 64,994 + BACOVA_02294 0.21 -0.3 65,001 + BACOVA_02294 0.22 +0.6 65,001 + BACOVA_02294 0.22 +0.1 65,002 - BACOVA_02294 0.22 +0.2 65,002 - BACOVA_02294 0.22 +0.1 65,005 + BACOVA_02294 0.22 +1.1 65,005 + BACOVA_02294 0.22 -0.9 65,006 - BACOVA_02294 0.23 -1.8 65,006 - BACOVA_02294 0.23 -1.1 65,006 - BACOVA_02294 0.23 -0.6 65,031 + BACOVA_02294 0.26 +0.5 65,052 + BACOVA_02294 0.29 +0.9 65,052 + BACOVA_02294 0.29 -1.8 65,086 - BACOVA_02294 0.33 -0.6 65,133 + BACOVA_02294 0.39 -2.4 65,146 + BACOVA_02294 0.41 +0.2 65,201 - BACOVA_02294 0.48 +3.3 65,201 - BACOVA_02294 0.48 +3.1 65,205 + BACOVA_02294 0.48 +0.2 65,205 + BACOVA_02294 0.48 +0.8 65,244 - BACOVA_02294 0.53 -0.6 65,256 + BACOVA_02294 0.55 +1.1 65,321 + BACOVA_02294 0.63 +1.1 65,325 + BACOVA_02294 0.64 -0.1 65,325 + BACOVA_02294 0.64 -1.2 65,326 - BACOVA_02294 0.64 +1.5 65,336 + BACOVA_02294 0.65 +0.1 65,336 + BACOVA_02294 0.65 -2.1 65,337 - BACOVA_02294 0.65 +1.4 65,347 - BACOVA_02294 0.67 -1.5 65,347 - BACOVA_02294 0.67 +1.0 65,365 - BACOVA_02294 0.69 +0.1 65,385 + BACOVA_02294 0.72 -0.5 65,429 + BACOVA_02294 0.77 +1.1 65,467 - BACOVA_02294 0.82 -2.0 65,469 + BACOVA_02294 0.82 -2.7 65,470 - BACOVA_02294 0.83 +0.8 65,483 + BACOVA_02294 0.84 -1.7 65,490 + BACOVA_02294 0.85 -0.1 65,490 + BACOVA_02294 0.85 -1.9 65,545 - +1.1 65,578 + -0.8 65,592 + -2.4 65,593 - -0.9 65,594 + +0.1 65,594 + +4.0 65,597 + +2.1 65,606 - +1.1 65,628 + +0.3 65,629 - -0.2 65,683 - +0.2 65,704 + BACOVA_02295 0.18 -1.0 65,705 - BACOVA_02295 0.19 +0.5
Or see this region's nucleotide sequence