Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02262

Experiment: amylopectin from maize 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02260 and BACOVA_02261 overlap by 1 nucleotidesBACOVA_02261 and BACOVA_02262 are separated by 100 nucleotidesBACOVA_02262 and BACOVA_02263 are separated by 111 nucleotidesBACOVA_02263 and BACOVA_02264 are separated by 74 nucleotides BACOVA_02260: BACOVA_02260 - RmuC domain protein, at 36,620 to 37,855 _02260 BACOVA_02261: BACOVA_02261 - methionine aminopeptidase, type I, at 37,855 to 38,709 _02261 BACOVA_02262: BACOVA_02262 - hypothetical protein, at 38,810 to 39,433 _02262 BACOVA_02263: BACOVA_02263 - hypothetical protein, at 39,545 to 39,751 _02263 BACOVA_02264: BACOVA_02264 - radical SAM domain protein, at 39,826 to 41,184 _02264 Position (kb) 38 39 40Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 37.837 kb on + strandat 37.837 kb on + strandat 37.838 kb on - strandat 37.842 kb on - strandat 37.857 kb on - strandat 37.857 kb on - strandat 37.860 kb on - strandat 37.900 kb on - strandat 37.936 kb on - strandat 37.977 kb on - strand, within BACOVA_02261at 37.990 kb on - strand, within BACOVA_02261at 37.995 kb on + strand, within BACOVA_02261at 37.995 kb on + strand, within BACOVA_02261at 37.995 kb on + strand, within BACOVA_02261at 37.996 kb on - strand, within BACOVA_02261at 38.207 kb on - strand, within BACOVA_02261at 38.233 kb on + strand, within BACOVA_02261at 38.233 kb on + strand, within BACOVA_02261at 38.272 kb on - strand, within BACOVA_02261at 38.277 kb on + strand, within BACOVA_02261at 38.307 kb on - strand, within BACOVA_02261at 38.323 kb on + strand, within BACOVA_02261at 38.323 kb on + strand, within BACOVA_02261at 38.324 kb on - strand, within BACOVA_02261at 38.332 kb on - strand, within BACOVA_02261at 38.335 kb on - strand, within BACOVA_02261at 38.384 kb on - strand, within BACOVA_02261at 38.426 kb on + strand, within BACOVA_02261at 38.426 kb on + strand, within BACOVA_02261at 38.472 kb on - strand, within BACOVA_02261at 38.472 kb on - strand, within BACOVA_02261at 38.476 kb on + strand, within BACOVA_02261at 38.477 kb on - strand, within BACOVA_02261at 38.477 kb on - strand, within BACOVA_02261at 38.527 kb on - strand, within BACOVA_02261at 38.527 kb on - strand, within BACOVA_02261at 38.569 kb on - strand, within BACOVA_02261at 38.596 kb on + strand, within BACOVA_02261at 38.616 kb on + strand, within BACOVA_02261at 38.641 kb on + strandat 38.641 kb on + strandat 38.653 kb on + strandat 38.670 kb on + strandat 38.711 kb on - strandat 38.711 kb on - strandat 38.720 kb on + strandat 38.721 kb on - strandat 38.730 kb on + strandat 38.761 kb on - strandat 38.811 kb on + strandat 38.841 kb on - strandat 38.871 kb on + strandat 38.878 kb on - strand, within BACOVA_02262at 38.908 kb on + strand, within BACOVA_02262at 38.996 kb on + strand, within BACOVA_02262at 39.003 kb on + strand, within BACOVA_02262at 39.003 kb on + strand, within BACOVA_02262at 39.004 kb on - strand, within BACOVA_02262at 39.005 kb on + strand, within BACOVA_02262at 39.005 kb on + strand, within BACOVA_02262at 39.006 kb on - strand, within BACOVA_02262at 39.029 kb on + strand, within BACOVA_02262at 39.092 kb on - strand, within BACOVA_02262at 39.116 kb on + strand, within BACOVA_02262at 39.123 kb on - strand, within BACOVA_02262at 39.132 kb on + strand, within BACOVA_02262at 39.161 kb on + strand, within BACOVA_02262at 39.162 kb on - strand, within BACOVA_02262at 39.174 kb on + strand, within BACOVA_02262at 39.175 kb on - strand, within BACOVA_02262at 39.261 kb on + strand, within BACOVA_02262at 39.261 kb on + strand, within BACOVA_02262at 39.261 kb on + strand, within BACOVA_02262at 39.262 kb on - strand, within BACOVA_02262at 39.262 kb on - strand, within BACOVA_02262at 39.296 kb on - strand, within BACOVA_02262at 39.299 kb on + strand, within BACOVA_02262at 39.299 kb on + strand, within BACOVA_02262at 39.381 kb on - strandat 39.393 kb on - strandat 39.434 kb on - strandat 39.458 kb on + strandat 39.458 kb on + strandat 39.459 kb on - strandat 39.459 kb on - strandat 39.505 kb on - strandat 39.511 kb on - strandat 39.520 kb on + strandat 39.543 kb on - strandat 39.560 kb on - strandat 39.579 kb on - strand, within BACOVA_02263at 39.647 kb on + strand, within BACOVA_02263at 39.648 kb on - strand, within BACOVA_02263at 39.648 kb on - strand, within BACOVA_02263at 39.681 kb on - strand, within BACOVA_02263at 39.702 kb on - strand, within BACOVA_02263at 39.720 kb on - strand, within BACOVA_02263at 39.720 kb on - strand, within BACOVA_02263at 39.720 kb on - strand, within BACOVA_02263at 39.743 kb on + strandat 39.744 kb on - strandat 39.877 kb on + strandat 39.899 kb on - strandat 39.900 kb on + strandat 39.957 kb on + strandat 39.957 kb on + strandat 39.959 kb on + strandat 39.959 kb on + strandat 39.960 kb on - strandat 39.960 kb on - strandat 39.987 kb on - strand, within BACOVA_02264at 40.009 kb on + strand, within BACOVA_02264at 40.009 kb on + strand, within BACOVA_02264at 40.009 kb on + strand, within BACOVA_02264at 40.041 kb on - strand, within BACOVA_02264at 40.041 kb on - strand, within BACOVA_02264at 40.059 kb on - strand, within BACOVA_02264at 40.064 kb on - strand, within BACOVA_02264at 40.064 kb on - strand, within BACOVA_02264at 40.064 kb on - strand, within BACOVA_02264at 40.064 kb on - strand, within BACOVA_02264at 40.109 kb on - strand, within BACOVA_02264at 40.145 kb on + strand, within BACOVA_02264at 40.153 kb on + strand, within BACOVA_02264at 40.190 kb on + strand, within BACOVA_02264at 40.207 kb on + strand, within BACOVA_02264at 40.211 kb on - strand, within BACOVA_02264at 40.211 kb on - strand, within BACOVA_02264at 40.211 kb on - strand, within BACOVA_02264at 40.246 kb on + strand, within BACOVA_02264at 40.246 kb on + strand, within BACOVA_02264at 40.246 kb on + strand, within BACOVA_02264at 40.246 kb on + strand, within BACOVA_02264at 40.251 kb on - strand, within BACOVA_02264at 40.357 kb on - strand, within BACOVA_02264at 40.369 kb on + strand, within BACOVA_02264at 40.370 kb on - strand, within BACOVA_02264at 40.426 kb on + strand, within BACOVA_02264

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Per-strain Table

Position Strand Gene LocusTag Fraction amylopectin from maize 2.5 mg/ml (C)
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37,837 + -0.5
37,837 + +3.1
37,838 - -1.6
37,842 - +1.6
37,857 - +0.1
37,857 - +1.7
37,860 - +2.1
37,900 - -0.2
37,936 - -0.7
37,977 - BACOVA_02261 0.14 +1.5
37,990 - BACOVA_02261 0.16 -1.4
37,995 + BACOVA_02261 0.16 -0.4
37,995 + BACOVA_02261 0.16 -1.6
37,995 + BACOVA_02261 0.16 -0.9
37,996 - BACOVA_02261 0.16 -1.1
38,207 - BACOVA_02261 0.41 -0.2
38,233 + BACOVA_02261 0.44 +0.5
38,233 + BACOVA_02261 0.44 -1.2
38,272 - BACOVA_02261 0.49 -0.5
38,277 + BACOVA_02261 0.49 -0.5
38,307 - BACOVA_02261 0.53 -1.4
38,323 + BACOVA_02261 0.55 +1.1
38,323 + BACOVA_02261 0.55 +1.1
38,324 - BACOVA_02261 0.55 +2.1
38,332 - BACOVA_02261 0.56 -0.9
38,335 - BACOVA_02261 0.56 -1.2
38,384 - BACOVA_02261 0.62 +2.4
38,426 + BACOVA_02261 0.67 +0.5
38,426 + BACOVA_02261 0.67 -3.3
38,472 - BACOVA_02261 0.72 -0.2
38,472 - BACOVA_02261 0.72 -0.2
38,476 + BACOVA_02261 0.73 -0.6
38,477 - BACOVA_02261 0.73 +0.1
38,477 - BACOVA_02261 0.73 -0.0
38,527 - BACOVA_02261 0.79 +3.1
38,527 - BACOVA_02261 0.79 -1.8
38,569 - BACOVA_02261 0.84 +1.5
38,596 + BACOVA_02261 0.87 -0.2
38,616 + BACOVA_02261 0.89 -0.1
38,641 + -0.2
38,641 + +2.0
38,653 + +1.2
38,670 + +0.3
38,711 - -0.7
38,711 - -1.4
38,720 + +1.4
38,721 - -1.5
38,730 + +2.7
38,761 - -0.2
38,811 + -1.2
38,841 - -2.2
38,871 + +0.5
38,878 - BACOVA_02262 0.11 +3.0
38,908 + BACOVA_02262 0.16 -0.1
38,996 + BACOVA_02262 0.30 -0.1
39,003 + BACOVA_02262 0.31 +2.8
39,003 + BACOVA_02262 0.31 -0.9
39,004 - BACOVA_02262 0.31 -1.2
39,005 + BACOVA_02262 0.31 -0.8
39,005 + BACOVA_02262 0.31 +0.9
39,006 - BACOVA_02262 0.31 -0.2
39,029 + BACOVA_02262 0.35 +3.2
39,092 - BACOVA_02262 0.45 -2.4
39,116 + BACOVA_02262 0.49 +0.0
39,123 - BACOVA_02262 0.50 +2.1
39,132 + BACOVA_02262 0.52 -0.6
39,161 + BACOVA_02262 0.56 -0.6
39,162 - BACOVA_02262 0.56 +2.4
39,174 + BACOVA_02262 0.58 +0.5
39,175 - BACOVA_02262 0.58 -0.9
39,261 + BACOVA_02262 0.72 -1.2
39,261 + BACOVA_02262 0.72 +0.5
39,261 + BACOVA_02262 0.72 -0.7
39,262 - BACOVA_02262 0.72 +0.5
39,262 - BACOVA_02262 0.72 -0.2
39,296 - BACOVA_02262 0.78 -0.7
39,299 + BACOVA_02262 0.78 +1.1
39,299 + BACOVA_02262 0.78 +0.1
39,381 - -0.1
39,393 - -0.7
39,434 - -0.6
39,458 + +2.5
39,458 + +0.1
39,459 - -0.3
39,459 - +0.5
39,505 - -0.7
39,511 - -1.7
39,520 + -2.0
39,543 - +1.0
39,560 - -1.1
39,579 - BACOVA_02263 0.16 +0.2
39,647 + BACOVA_02263 0.49 -0.4
39,648 - BACOVA_02263 0.50 -0.6
39,648 - BACOVA_02263 0.50 -0.8
39,681 - BACOVA_02263 0.66 +2.1
39,702 - BACOVA_02263 0.76 -1.5
39,720 - BACOVA_02263 0.85 -1.2
39,720 - BACOVA_02263 0.85 -1.1
39,720 - BACOVA_02263 0.85 +1.1
39,743 + +0.5
39,744 - -0.7
39,877 + +1.1
39,899 - -1.6
39,900 + -0.7
39,957 + -0.4
39,957 + -0.4
39,959 + -2.2
39,959 + -1.1
39,960 - +1.1
39,960 - -0.2
39,987 - BACOVA_02264 0.12 +1.7
40,009 + BACOVA_02264 0.13 -1.8
40,009 + BACOVA_02264 0.13 -1.5
40,009 + BACOVA_02264 0.13 -0.4
40,041 - BACOVA_02264 0.16 -1.2
40,041 - BACOVA_02264 0.16 -0.9
40,059 - BACOVA_02264 0.17 +0.8
40,064 - BACOVA_02264 0.18 -0.6
40,064 - BACOVA_02264 0.18 -1.5
40,064 - BACOVA_02264 0.18 -2.4
40,064 - BACOVA_02264 0.18 -1.7
40,109 - BACOVA_02264 0.21 +0.6
40,145 + BACOVA_02264 0.23 -1.1
40,153 + BACOVA_02264 0.24 +1.1
40,190 + BACOVA_02264 0.27 -0.5
40,207 + BACOVA_02264 0.28 -0.4
40,211 - BACOVA_02264 0.28 -0.5
40,211 - BACOVA_02264 0.28 +2.1
40,211 - BACOVA_02264 0.28 -1.1
40,246 + BACOVA_02264 0.31 +1.1
40,246 + BACOVA_02264 0.31 -0.5
40,246 + BACOVA_02264 0.31 -0.6
40,246 + BACOVA_02264 0.31 -1.9
40,251 - BACOVA_02264 0.31 -0.9
40,357 - BACOVA_02264 0.39 -2.7
40,369 + BACOVA_02264 0.40 +1.1
40,370 - BACOVA_02264 0.40 -0.0
40,426 + BACOVA_02264 0.44 -0.6

Or see this region's nucleotide sequence