Experiment: amylopectin from maize 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02146 and BACOVA_02147 are separated by 40 nucleotides BACOVA_02147 and BACOVA_02148 are separated by 37 nucleotides BACOVA_02148 and BACOVA_02149 are separated by 88 nucleotides BACOVA_02149 and BACOVA_02150 are separated by 83 nucleotides BACOVA_02150 and BACOVA_02151 are separated by 330 nucleotides BACOVA_02151 and BACOVA_02152 are separated by 94 nucleotides
BACOVA_02146: BACOVA_02146 - hypothetical protein, at 486,542 to 486,700
_02146
BACOVA_02147: BACOVA_02147 - hypothetical protein, at 486,741 to 486,971
_02147
BACOVA_02148: BACOVA_02148 - hypothetical protein, at 487,009 to 487,191
_02148
BACOVA_02149: BACOVA_02149 - hypothetical protein, at 487,280 to 487,504
_02149
BACOVA_02150: BACOVA_02150 - hypothetical protein, at 487,588 to 487,863
_02150
BACOVA_02151: BACOVA_02151 - hypothetical protein, at 488,194 to 488,451
_02151
BACOVA_02152: BACOVA_02152 - resolvase, N-terminal domain protein, at 488,546 to 490,384
_02152
Position (kb) 487
488 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 486.628 kb on + strand, within BACOVA_02146 at 486.655 kb on + strand, within BACOVA_02146 at 486.656 kb on - strand, within BACOVA_02146 at 486.671 kb on - strand, within BACOVA_02146 at 486.671 kb on - strand, within BACOVA_02146 at 486.675 kb on + strand, within BACOVA_02146 at 486.694 kb on - strand at 486.696 kb on + strand at 486.696 kb on + strand at 486.696 kb on + strand at 486.698 kb on + strand at 486.698 kb on + strand at 486.711 kb on + strand at 486.712 kb on - strand at 486.733 kb on + strand at 486.733 kb on + strand at 486.736 kb on + strand at 486.741 kb on - strand at 486.781 kb on + strand, within BACOVA_02147 at 486.782 kb on - strand, within BACOVA_02147 at 486.784 kb on + strand, within BACOVA_02147 at 486.784 kb on + strand, within BACOVA_02147 at 486.787 kb on + strand, within BACOVA_02147 at 486.820 kb on + strand, within BACOVA_02147 at 486.837 kb on - strand, within BACOVA_02147 at 486.839 kb on + strand, within BACOVA_02147 at 486.839 kb on + strand, within BACOVA_02147 at 486.839 kb on + strand, within BACOVA_02147 at 486.840 kb on - strand, within BACOVA_02147 at 486.853 kb on + strand, within BACOVA_02147 at 486.853 kb on + strand, within BACOVA_02147 at 486.888 kb on - strand, within BACOVA_02147 at 486.896 kb on + strand, within BACOVA_02147 at 486.899 kb on - strand, within BACOVA_02147 at 486.910 kb on + strand, within BACOVA_02147 at 486.923 kb on - strand, within BACOVA_02147 at 486.923 kb on - strand, within BACOVA_02147 at 486.923 kb on - strand, within BACOVA_02147 at 486.935 kb on - strand, within BACOVA_02147 at 486.944 kb on + strand, within BACOVA_02147 at 486.945 kb on - strand, within BACOVA_02147 at 486.945 kb on - strand, within BACOVA_02147 at 486.949 kb on + strand at 486.950 kb on - strand at 486.969 kb on + strand at 486.970 kb on - strand at 486.983 kb on + strand at 486.989 kb on - strand at 487.000 kb on - strand at 487.005 kb on - strand at 487.009 kb on - strand at 487.042 kb on - strand, within BACOVA_02148 at 487.044 kb on + strand, within BACOVA_02148 at 487.097 kb on + strand, within BACOVA_02148 at 487.121 kb on + strand, within BACOVA_02148 at 487.121 kb on + strand, within BACOVA_02148 at 487.122 kb on - strand, within BACOVA_02148 at 487.122 kb on - strand, within BACOVA_02148 at 487.125 kb on + strand, within BACOVA_02148 at 487.144 kb on - strand, within BACOVA_02148 at 487.144 kb on - strand, within BACOVA_02148 at 487.144 kb on - strand, within BACOVA_02148 at 487.149 kb on - strand, within BACOVA_02148 at 487.195 kb on + strand at 487.196 kb on - strand at 487.199 kb on - strand at 487.199 kb on - strand at 487.199 kb on - strand at 487.199 kb on - strand at 487.209 kb on + strand at 487.227 kb on + strand at 487.251 kb on - strand at 487.257 kb on - strand at 487.257 kb on - strand at 487.263 kb on - strand at 487.263 kb on - strand at 487.271 kb on + strand at 487.301 kb on + strand at 487.302 kb on - strand at 487.302 kb on - strand at 487.302 kb on - strand at 487.312 kb on - strand, within BACOVA_02149 at 487.315 kb on - strand, within BACOVA_02149 at 487.315 kb on - strand, within BACOVA_02149 at 487.338 kb on + strand, within BACOVA_02149 at 487.386 kb on + strand, within BACOVA_02149 at 487.396 kb on + strand, within BACOVA_02149 at 487.406 kb on - strand, within BACOVA_02149 at 487.406 kb on - strand, within BACOVA_02149 at 487.456 kb on + strand, within BACOVA_02149 at 487.545 kb on + strand at 487.563 kb on + strand at 487.564 kb on - strand at 487.564 kb on - strand at 487.564 kb on - strand at 487.573 kb on + strand at 487.573 kb on + strand at 487.574 kb on - strand at 487.574 kb on - strand at 487.576 kb on + strand at 487.576 kb on + strand at 487.578 kb on + strand at 487.578 kb on + strand at 487.587 kb on + strand at 487.588 kb on - strand at 487.588 kb on - strand at 487.588 kb on - strand at 487.648 kb on + strand, within BACOVA_02150 at 487.649 kb on - strand, within BACOVA_02150 at 487.680 kb on - strand, within BACOVA_02150 at 487.680 kb on - strand, within BACOVA_02150 at 487.680 kb on - strand, within BACOVA_02150 at 487.703 kb on + strand, within BACOVA_02150 at 487.703 kb on + strand, within BACOVA_02150 at 487.704 kb on - strand, within BACOVA_02150 at 487.704 kb on - strand, within BACOVA_02150 at 487.706 kb on - strand, within BACOVA_02150 at 487.706 kb on - strand, within BACOVA_02150 at 487.718 kb on + strand, within BACOVA_02150 at 487.722 kb on + strand, within BACOVA_02150 at 487.722 kb on + strand, within BACOVA_02150 at 487.722 kb on + strand, within BACOVA_02150 at 487.724 kb on + strand, within BACOVA_02150 at 487.724 kb on + strand, within BACOVA_02150 at 487.741 kb on + strand, within BACOVA_02150 at 487.742 kb on - strand, within BACOVA_02150 at 487.753 kb on - strand, within BACOVA_02150 at 487.753 kb on - strand, within BACOVA_02150 at 487.784 kb on + strand, within BACOVA_02150 at 487.785 kb on - strand, within BACOVA_02150 at 487.794 kb on + strand, within BACOVA_02150 at 487.854 kb on + strand at 487.860 kb on - strand at 487.861 kb on + strand at 487.862 kb on - strand at 487.862 kb on - strand at 487.872 kb on + strand at 487.878 kb on + strand at 487.879 kb on - strand at 487.880 kb on + strand at 487.880 kb on + strand at 487.880 kb on + strand at 487.881 kb on - strand at 487.881 kb on - strand at 487.881 kb on - strand at 487.881 kb on - strand at 487.882 kb on + strand at 487.882 kb on + strand at 487.900 kb on + strand at 487.900 kb on + strand at 487.912 kb on + strand at 487.913 kb on - strand at 487.913 kb on - strand at 487.923 kb on - strand at 487.929 kb on - strand at 487.935 kb on + strand at 487.938 kb on + strand at 487.941 kb on + strand at 487.942 kb on - strand at 487.942 kb on - strand at 487.944 kb on + strand at 487.945 kb on - strand at 487.947 kb on + strand at 487.951 kb on + strand at 487.977 kb on - strand at 487.986 kb on + strand at 487.991 kb on + strand at 487.995 kb on + strand at 488.000 kb on + strand at 488.001 kb on - strand at 488.022 kb on - strand at 488.026 kb on - strand at 488.055 kb on - strand at 488.074 kb on + strand at 488.087 kb on - strand at 488.113 kb on - strand at 488.113 kb on - strand at 488.130 kb on - strand at 488.132 kb on - strand at 488.175 kb on + strand at 488.193 kb on + strand at 488.215 kb on - strand at 488.275 kb on + strand, within BACOVA_02151 at 488.275 kb on + strand, within BACOVA_02151 at 488.275 kb on + strand, within BACOVA_02151 at 488.276 kb on - strand, within BACOVA_02151 at 488.277 kb on + strand, within BACOVA_02151 at 488.277 kb on + strand, within BACOVA_02151 at 488.277 kb on + strand, within BACOVA_02151 at 488.328 kb on - strand, within BACOVA_02151 at 488.359 kb on - strand, within BACOVA_02151 at 488.391 kb on - strand, within BACOVA_02151 at 488.407 kb on - strand, within BACOVA_02151 at 488.407 kb on - strand, within BACOVA_02151 at 488.418 kb on - strand, within BACOVA_02151 at 488.429 kb on + strand at 488.430 kb on - strand at 488.449 kb on + strand at 488.516 kb on + strand at 488.524 kb on - strand at 488.527 kb on - strand at 488.561 kb on - strand at 488.563 kb on - strand at 488.567 kb on + strand at 488.587 kb on + strand at 488.588 kb on - strand at 488.588 kb on - strand at 488.591 kb on + strand at 488.591 kb on + strand at 488.592 kb on - strand at 488.592 kb on - strand at 488.592 kb on - strand at 488.592 kb on - strand at 488.608 kb on + strand at 488.618 kb on + strand at 488.618 kb on + strand at 488.619 kb on - strand at 488.619 kb on - strand at 488.623 kb on + strand at 488.627 kb on + strand at 488.628 kb on - strand at 488.628 kb on - strand at 488.628 kb on - strand at 488.628 kb on - strand at 488.653 kb on + strand at 488.653 kb on + strand at 488.654 kb on - strand at 488.654 kb on - strand at 488.654 kb on - strand at 488.654 kb on - strand at 488.654 kb on - strand at 488.701 kb on + strand at 488.723 kb on - strand at 488.728 kb on - strand at 488.728 kb on - strand at 488.734 kb on + strand, within BACOVA_02152 at 488.740 kb on + strand, within BACOVA_02152 at 488.740 kb on + strand, within BACOVA_02152 at 488.741 kb on - strand, within BACOVA_02152 at 488.743 kb on - strand, within BACOVA_02152 at 488.745 kb on + strand, within BACOVA_02152 at 488.746 kb on - strand, within BACOVA_02152 at 488.746 kb on - strand, within BACOVA_02152 at 488.758 kb on + strand, within BACOVA_02152 at 488.759 kb on - strand, within BACOVA_02152 at 488.778 kb on + strand, within BACOVA_02152 at 488.779 kb on - strand, within BACOVA_02152 at 488.779 kb on - strand, within BACOVA_02152 at 488.779 kb on - strand, within BACOVA_02152 at 488.779 kb on - strand, within BACOVA_02152 at 488.780 kb on + strand, within BACOVA_02152 at 488.780 kb on + strand, within BACOVA_02152 at 488.781 kb on - strand, within BACOVA_02152 at 488.781 kb on - strand, within BACOVA_02152 at 488.781 kb on - strand, within BACOVA_02152 at 488.783 kb on + strand, within BACOVA_02152 at 488.791 kb on - strand, within BACOVA_02152 at 488.802 kb on - strand, within BACOVA_02152 at 488.803 kb on + strand, within BACOVA_02152 at 488.803 kb on + strand, within BACOVA_02152 at 488.806 kb on + strand, within BACOVA_02152 at 488.806 kb on + strand, within BACOVA_02152 at 488.806 kb on + strand, within BACOVA_02152 at 488.808 kb on + strand, within BACOVA_02152 at 488.810 kb on + strand, within BACOVA_02152 at 488.820 kb on - strand, within BACOVA_02152 at 488.826 kb on - strand, within BACOVA_02152 at 488.826 kb on - strand, within BACOVA_02152 at 488.846 kb on - strand, within BACOVA_02152 at 488.848 kb on + strand, within BACOVA_02152 at 488.861 kb on + strand, within BACOVA_02152 at 488.862 kb on - strand, within BACOVA_02152 at 488.862 kb on - strand, within BACOVA_02152
Per-strain Table
Position Strand Gene LocusTag Fraction amylopectin from maize 2.5 mg/ml (C) remove 486,628 + BACOVA_02146 0.54 -1.4 486,655 + BACOVA_02146 0.71 -0.6 486,656 - BACOVA_02146 0.72 -1.4 486,671 - BACOVA_02146 0.81 +0.1 486,671 - BACOVA_02146 0.81 -1.4 486,675 + BACOVA_02146 0.84 -1.6 486,694 - +2.1 486,696 + -1.1 486,696 + +2.4 486,696 + +0.1 486,698 + -1.1 486,698 + +1.1 486,711 + -2.9 486,712 - +0.2 486,733 + +0.1 486,733 + +1.8 486,736 + +1.0 486,741 - +1.1 486,781 + BACOVA_02147 0.17 -1.6 486,782 - BACOVA_02147 0.18 -0.2 486,784 + BACOVA_02147 0.19 -0.4 486,784 + BACOVA_02147 0.19 +0.3 486,787 + BACOVA_02147 0.20 +0.4 486,820 + BACOVA_02147 0.34 -0.9 486,837 - BACOVA_02147 0.42 -1.1 486,839 + BACOVA_02147 0.42 -2.4 486,839 + BACOVA_02147 0.42 -0.6 486,839 + BACOVA_02147 0.42 +0.4 486,840 - BACOVA_02147 0.43 -1.1 486,853 + BACOVA_02147 0.48 +0.8 486,853 + BACOVA_02147 0.48 +0.4 486,888 - BACOVA_02147 0.64 -1.1 486,896 + BACOVA_02147 0.67 +1.8 486,899 - BACOVA_02147 0.68 +1.1 486,910 + BACOVA_02147 0.73 -1.9 486,923 - BACOVA_02147 0.79 -0.3 486,923 - BACOVA_02147 0.79 +2.5 486,923 - BACOVA_02147 0.79 +1.4 486,935 - BACOVA_02147 0.84 +1.0 486,944 + BACOVA_02147 0.88 -0.5 486,945 - BACOVA_02147 0.88 +0.8 486,945 - BACOVA_02147 0.88 -1.7 486,949 + -0.1 486,950 - -0.0 486,969 + +0.2 486,970 - +2.4 486,983 + -0.0 486,989 - -1.1 487,000 - +1.5 487,005 - +0.6 487,009 - -1.5 487,042 - BACOVA_02148 0.18 +1.8 487,044 + BACOVA_02148 0.19 -1.6 487,097 + BACOVA_02148 0.48 +1.9 487,121 + BACOVA_02148 0.61 +0.6 487,121 + BACOVA_02148 0.61 -1.8 487,122 - BACOVA_02148 0.62 -1.9 487,122 - BACOVA_02148 0.62 -2.4 487,125 + BACOVA_02148 0.63 -1.5 487,144 - BACOVA_02148 0.74 -0.4 487,144 - BACOVA_02148 0.74 -1.4 487,144 - BACOVA_02148 0.74 +0.7 487,149 - BACOVA_02148 0.77 +0.4 487,195 + -1.2 487,196 - -1.2 487,199 - -0.4 487,199 - -0.9 487,199 - -0.9 487,199 - +0.4 487,209 + +1.6 487,227 + +0.4 487,251 - -1.3 487,257 - +0.5 487,257 - -0.6 487,263 - -0.6 487,263 - -0.1 487,271 + +2.4 487,301 + -3.3 487,302 - -0.4 487,302 - -2.8 487,302 - +0.3 487,312 - BACOVA_02149 0.14 -0.7 487,315 - BACOVA_02149 0.16 +0.9 487,315 - BACOVA_02149 0.16 -1.3 487,338 + BACOVA_02149 0.26 -1.6 487,386 + BACOVA_02149 0.47 +4.0 487,396 + BACOVA_02149 0.52 -0.2 487,406 - BACOVA_02149 0.56 +0.2 487,406 - BACOVA_02149 0.56 -1.0 487,456 + BACOVA_02149 0.78 +0.2 487,545 + +0.8 487,563 + +1.8 487,564 - +0.2 487,564 - +1.8 487,564 - +2.7 487,573 + -0.7 487,573 + -1.5 487,574 - +0.8 487,574 - +1.2 487,576 + -3.0 487,576 + -0.3 487,578 + +1.4 487,578 + -1.5 487,587 + +1.4 487,588 - +1.8 487,588 - -1.1 487,588 - -1.2 487,648 + BACOVA_02150 0.22 -0.8 487,649 - BACOVA_02150 0.22 +1.4 487,680 - BACOVA_02150 0.33 +0.1 487,680 - BACOVA_02150 0.33 -1.3 487,680 - BACOVA_02150 0.33 +0.1 487,703 + BACOVA_02150 0.42 -1.1 487,703 + BACOVA_02150 0.42 -1.3 487,704 - BACOVA_02150 0.42 +0.4 487,704 - BACOVA_02150 0.42 -0.4 487,706 - BACOVA_02150 0.43 -0.6 487,706 - BACOVA_02150 0.43 -1.9 487,718 + BACOVA_02150 0.47 +0.5 487,722 + BACOVA_02150 0.49 +3.4 487,722 + BACOVA_02150 0.49 +0.6 487,722 + BACOVA_02150 0.49 +2.6 487,724 + BACOVA_02150 0.49 +0.2 487,724 + BACOVA_02150 0.49 +0.5 487,741 + BACOVA_02150 0.55 +0.8 487,742 - BACOVA_02150 0.56 +1.6 487,753 - BACOVA_02150 0.60 +0.1 487,753 - BACOVA_02150 0.60 -1.9 487,784 + BACOVA_02150 0.71 +0.6 487,785 - BACOVA_02150 0.71 -1.3 487,794 + BACOVA_02150 0.75 +0.6 487,854 + -0.4 487,860 - -2.4 487,861 + +0.8 487,862 - +2.1 487,862 - -1.1 487,872 + +0.8 487,878 + -0.9 487,879 - +1.8 487,880 + -0.5 487,880 + +0.4 487,880 + +0.8 487,881 - +2.0 487,881 - -1.9 487,881 - -1.1 487,881 - -2.1 487,882 + -2.0 487,882 + -0.4 487,900 + -3.7 487,900 + -2.3 487,912 + +0.4 487,913 - -0.8 487,913 - -1.3 487,923 - -1.0 487,929 - -0.8 487,935 + +0.8 487,938 + +1.4 487,941 + -2.5 487,942 - +0.9 487,942 - -0.1 487,944 + -0.2 487,945 - -1.0 487,947 + +1.6 487,951 + +0.8 487,977 - +0.8 487,986 + +0.2 487,991 + -0.9 487,995 + -1.4 488,000 + -2.7 488,001 - -0.1 488,022 - +1.1 488,026 - +0.9 488,055 - -0.3 488,074 + -0.4 488,087 - -1.0 488,113 - -0.1 488,113 - -2.7 488,130 - -1.3 488,132 - +0.3 488,175 + -1.1 488,193 + -1.2 488,215 - -0.4 488,275 + BACOVA_02151 0.31 +0.6 488,275 + BACOVA_02151 0.31 +1.0 488,275 + BACOVA_02151 0.31 +2.1 488,276 - BACOVA_02151 0.32 -1.6 488,277 + BACOVA_02151 0.32 -0.7 488,277 + BACOVA_02151 0.32 +2.4 488,277 + BACOVA_02151 0.32 +0.2 488,328 - BACOVA_02151 0.52 -0.6 488,359 - BACOVA_02151 0.64 -1.6 488,391 - BACOVA_02151 0.76 -0.8 488,407 - BACOVA_02151 0.83 -0.7 488,407 - BACOVA_02151 0.83 -1.9 488,418 - BACOVA_02151 0.87 -1.4 488,429 + +2.2 488,430 - -0.4 488,449 + -1.6 488,516 + -1.6 488,524 - -2.1 488,527 - -0.7 488,561 - +1.2 488,563 - +0.1 488,567 + +0.1 488,587 + -1.4 488,588 - -1.5 488,588 - -0.4 488,591 + -0.9 488,591 + -1.4 488,592 - -1.1 488,592 - +0.1 488,592 - -0.8 488,592 - +0.8 488,608 + -1.8 488,618 + -0.6 488,618 + +1.5 488,619 - +2.3 488,619 - -1.8 488,623 + -1.7 488,627 + -0.8 488,628 - +0.2 488,628 - -0.0 488,628 - -0.2 488,628 - +0.4 488,653 + +1.1 488,653 + -0.2 488,654 - -0.8 488,654 - -0.4 488,654 - -2.1 488,654 - -0.9 488,654 - -1.1 488,701 + +0.4 488,723 - -0.8 488,728 - -1.3 488,728 - -1.4 488,734 + BACOVA_02152 0.10 +0.3 488,740 + BACOVA_02152 0.11 -0.2 488,740 + BACOVA_02152 0.11 -1.7 488,741 - BACOVA_02152 0.11 -1.2 488,743 - BACOVA_02152 0.11 -0.3 488,745 + BACOVA_02152 0.11 +1.1 488,746 - BACOVA_02152 0.11 +1.8 488,746 - BACOVA_02152 0.11 -0.4 488,758 + BACOVA_02152 0.12 -1.1 488,759 - BACOVA_02152 0.12 -0.2 488,778 + BACOVA_02152 0.13 -1.6 488,779 - BACOVA_02152 0.13 -1.6 488,779 - BACOVA_02152 0.13 -0.0 488,779 - BACOVA_02152 0.13 -1.1 488,779 - BACOVA_02152 0.13 +1.1 488,780 + BACOVA_02152 0.13 +0.6 488,780 + BACOVA_02152 0.13 -1.1 488,781 - BACOVA_02152 0.13 -0.7 488,781 - BACOVA_02152 0.13 +0.1 488,781 - BACOVA_02152 0.13 -1.0 488,783 + BACOVA_02152 0.13 +0.5 488,791 - BACOVA_02152 0.13 -0.4 488,802 - BACOVA_02152 0.14 -2.3 488,803 + BACOVA_02152 0.14 -1.3 488,803 + BACOVA_02152 0.14 -0.9 488,806 + BACOVA_02152 0.14 -0.6 488,806 + BACOVA_02152 0.14 +1.4 488,806 + BACOVA_02152 0.14 +0.0 488,808 + BACOVA_02152 0.14 -0.6 488,810 + BACOVA_02152 0.14 -0.2 488,820 - BACOVA_02152 0.15 -1.2 488,826 - BACOVA_02152 0.15 -1.6 488,826 - BACOVA_02152 0.15 +0.7 488,846 - BACOVA_02152 0.16 +0.6 488,848 + BACOVA_02152 0.16 -1.9 488,861 + BACOVA_02152 0.17 -3.0 488,862 - BACOVA_02152 0.17 -1.2 488,862 - BACOVA_02152 0.17 +0.3
Or see this region's nucleotide sequence