Experiment: amylopectin from maize 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02066 and BACOVA_02067 are separated by 250 nucleotides BACOVA_02067 and BACOVA_02068 are separated by 84 nucleotides BACOVA_02068 and BACOVA_02069 are separated by 177 nucleotides
BACOVA_02066: BACOVA_02066 - hypothetical protein, at 386,071 to 386,778
_02066
BACOVA_02067: BACOVA_02067 - alkyl hydroperoxide reductase, F subunit, at 387,029 to 388,579
_02067
BACOVA_02068: BACOVA_02068 - peroxiredoxin, at 388,664 to 389,230
_02068
BACOVA_02069: BACOVA_02069 - hydrolase, NUDIX family, at 389,408 to 389,968
_02069
Position (kb) 387
388
389 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 386.058 kb on - strand at 386.067 kb on + strand at 386.067 kb on + strand at 386.080 kb on + strand at 386.087 kb on + strand at 386.087 kb on + strand at 386.087 kb on + strand at 386.096 kb on + strand at 386.099 kb on + strand at 386.099 kb on + strand at 386.099 kb on + strand at 386.244 kb on - strand, within BACOVA_02066 at 386.246 kb on + strand, within BACOVA_02066 at 386.246 kb on + strand, within BACOVA_02066 at 386.257 kb on + strand, within BACOVA_02066 at 386.312 kb on + strand, within BACOVA_02066 at 386.313 kb on - strand, within BACOVA_02066 at 386.325 kb on + strand, within BACOVA_02066 at 386.326 kb on - strand, within BACOVA_02066 at 386.338 kb on + strand, within BACOVA_02066 at 386.339 kb on - strand, within BACOVA_02066 at 386.339 kb on - strand, within BACOVA_02066 at 386.339 kb on - strand, within BACOVA_02066 at 386.339 kb on - strand, within BACOVA_02066 at 386.340 kb on + strand, within BACOVA_02066 at 386.385 kb on + strand, within BACOVA_02066 at 386.405 kb on - strand, within BACOVA_02066 at 386.448 kb on + strand, within BACOVA_02066 at 386.501 kb on - strand, within BACOVA_02066 at 386.501 kb on - strand, within BACOVA_02066 at 386.501 kb on - strand, within BACOVA_02066 at 386.503 kb on - strand, within BACOVA_02066 at 386.518 kb on + strand, within BACOVA_02066 at 386.518 kb on + strand, within BACOVA_02066 at 386.586 kb on - strand, within BACOVA_02066 at 386.600 kb on + strand, within BACOVA_02066 at 386.600 kb on - strand, within BACOVA_02066 at 386.603 kb on - strand, within BACOVA_02066 at 386.603 kb on - strand, within BACOVA_02066 at 386.618 kb on + strand, within BACOVA_02066 at 386.619 kb on - strand, within BACOVA_02066 at 386.691 kb on - strand, within BACOVA_02066 at 386.762 kb on - strand at 386.762 kb on - strand at 386.763 kb on + strand at 386.763 kb on + strand at 386.763 kb on + strand at 386.763 kb on + strand at 386.763 kb on + strand at 386.764 kb on - strand at 386.767 kb on + strand at 386.767 kb on + strand at 386.767 kb on + strand at 386.768 kb on - strand at 386.768 kb on - strand at 386.768 kb on - strand at 386.780 kb on + strand at 386.804 kb on + strand at 386.805 kb on - strand at 386.821 kb on - strand at 386.821 kb on - strand at 386.917 kb on + strand at 386.921 kb on + strand at 386.929 kb on - strand at 386.949 kb on - strand at 386.957 kb on + strand at 386.974 kb on - strand at 386.974 kb on - strand at 386.974 kb on - strand at 386.988 kb on + strand at 387.000 kb on + strand at 387.001 kb on - strand at 387.014 kb on - strand at 387.021 kb on + strand at 387.035 kb on - strand at 387.092 kb on - strand at 387.097 kb on + strand at 387.097 kb on + strand at 387.109 kb on + strand at 387.110 kb on - strand at 387.111 kb on + strand at 387.111 kb on + strand at 387.111 kb on + strand at 387.112 kb on - strand at 387.112 kb on - strand at 387.112 kb on - strand at 387.112 kb on - strand at 387.121 kb on + strand at 387.141 kb on + strand at 387.141 kb on + strand at 387.141 kb on + strand at 387.146 kb on - strand at 387.221 kb on + strand, within BACOVA_02067 at 387.229 kb on + strand, within BACOVA_02067 at 387.257 kb on + strand, within BACOVA_02067 at 387.257 kb on + strand, within BACOVA_02067 at 387.258 kb on - strand, within BACOVA_02067 at 387.258 kb on - strand, within BACOVA_02067 at 387.326 kb on - strand, within BACOVA_02067 at 387.326 kb on - strand, within BACOVA_02067 at 387.338 kb on + strand, within BACOVA_02067 at 387.338 kb on + strand, within BACOVA_02067 at 387.463 kb on + strand, within BACOVA_02067 at 387.509 kb on + strand, within BACOVA_02067 at 387.510 kb on - strand, within BACOVA_02067 at 387.510 kb on - strand, within BACOVA_02067 at 387.518 kb on + strand, within BACOVA_02067 at 387.519 kb on - strand, within BACOVA_02067 at 387.519 kb on - strand, within BACOVA_02067 at 387.581 kb on - strand, within BACOVA_02067 at 387.605 kb on - strand, within BACOVA_02067 at 387.674 kb on - strand, within BACOVA_02067 at 387.674 kb on - strand, within BACOVA_02067 at 387.714 kb on - strand, within BACOVA_02067 at 387.718 kb on + strand, within BACOVA_02067 at 387.719 kb on - strand, within BACOVA_02067 at 387.870 kb on - strand, within BACOVA_02067 at 387.870 kb on - strand, within BACOVA_02067 at 387.884 kb on - strand, within BACOVA_02067 at 387.894 kb on + strand, within BACOVA_02067 at 387.894 kb on + strand, within BACOVA_02067 at 387.895 kb on - strand, within BACOVA_02067 at 387.899 kb on - strand, within BACOVA_02067 at 387.946 kb on - strand, within BACOVA_02067 at 387.983 kb on - strand, within BACOVA_02067 at 388.034 kb on + strand, within BACOVA_02067 at 388.034 kb on + strand, within BACOVA_02067 at 388.035 kb on - strand, within BACOVA_02067 at 388.079 kb on + strand, within BACOVA_02067 at 388.080 kb on - strand, within BACOVA_02067 at 388.080 kb on - strand, within BACOVA_02067 at 388.095 kb on - strand, within BACOVA_02067 at 388.107 kb on + strand, within BACOVA_02067 at 388.135 kb on + strand, within BACOVA_02067 at 388.179 kb on - strand, within BACOVA_02067 at 388.196 kb on - strand, within BACOVA_02067 at 388.385 kb on + strand, within BACOVA_02067 at 388.386 kb on - strand, within BACOVA_02067 at 388.386 kb on - strand, within BACOVA_02067 at 388.386 kb on - strand, within BACOVA_02067 at 388.390 kb on + strand, within BACOVA_02067 at 388.429 kb on + strand at 388.448 kb on + strand at 388.500 kb on - strand at 388.505 kb on + strand at 388.505 kb on + strand at 388.506 kb on - strand at 388.506 kb on - strand at 388.506 kb on - strand at 388.506 kb on - strand at 388.506 kb on - strand at 388.508 kb on - strand at 388.550 kb on + strand at 388.551 kb on - strand at 388.551 kb on - strand at 388.551 kb on - strand at 388.574 kb on + strand at 388.579 kb on + strand at 388.601 kb on + strand at 388.652 kb on + strand at 388.663 kb on - strand at 388.672 kb on + strand at 388.677 kb on - strand at 388.702 kb on + strand at 388.808 kb on - strand, within BACOVA_02068 at 388.813 kb on + strand, within BACOVA_02068 at 388.814 kb on - strand, within BACOVA_02068 at 388.814 kb on - strand, within BACOVA_02068 at 388.864 kb on + strand, within BACOVA_02068 at 388.864 kb on + strand, within BACOVA_02068 at 388.896 kb on + strand, within BACOVA_02068 at 388.896 kb on + strand, within BACOVA_02068 at 388.897 kb on - strand, within BACOVA_02068 at 388.897 kb on - strand, within BACOVA_02068 at 388.897 kb on - strand, within BACOVA_02068 at 388.899 kb on - strand, within BACOVA_02068 at 388.899 kb on - strand, within BACOVA_02068 at 388.899 kb on - strand, within BACOVA_02068 at 389.031 kb on - strand, within BACOVA_02068 at 389.090 kb on + strand, within BACOVA_02068 at 389.091 kb on - strand, within BACOVA_02068 at 389.091 kb on - strand, within BACOVA_02068 at 389.099 kb on - strand, within BACOVA_02068 at 389.118 kb on - strand, within BACOVA_02068 at 389.231 kb on - strand at 389.237 kb on + strand at 389.255 kb on + strand at 389.270 kb on - strand at 389.271 kb on + strand at 389.272 kb on - strand at 389.315 kb on + strand at 389.387 kb on - strand at 389.397 kb on + strand at 389.398 kb on - strand at 389.399 kb on + strand at 389.413 kb on + strand at 389.437 kb on + strand at 389.437 kb on + strand at 389.438 kb on - strand at 389.469 kb on + strand, within BACOVA_02069 at 389.470 kb on - strand, within BACOVA_02069 at 389.506 kb on + strand, within BACOVA_02069 at 389.521 kb on + strand, within BACOVA_02069 at 389.552 kb on + strand, within BACOVA_02069 at 389.578 kb on - strand, within BACOVA_02069
Per-strain Table
Position Strand Gene LocusTag Fraction amylopectin from maize 2.5 mg/ml (C) remove 386,058 - -1.6 386,067 + -0.8 386,067 + -2.6 386,080 + -1.4 386,087 + -0.6 386,087 + +3.0 386,087 + -0.9 386,096 + +0.3 386,099 + -3.2 386,099 + -0.8 386,099 + +2.9 386,244 - BACOVA_02066 0.24 +0.9 386,246 + BACOVA_02066 0.25 -1.1 386,246 + BACOVA_02066 0.25 -0.1 386,257 + BACOVA_02066 0.26 -1.2 386,312 + BACOVA_02066 0.34 -1.1 386,313 - BACOVA_02066 0.34 -0.6 386,325 + BACOVA_02066 0.36 -1.4 386,326 - BACOVA_02066 0.36 -0.6 386,338 + BACOVA_02066 0.38 -1.0 386,339 - BACOVA_02066 0.38 -3.4 386,339 - BACOVA_02066 0.38 -1.0 386,339 - BACOVA_02066 0.38 +1.9 386,339 - BACOVA_02066 0.38 +0.1 386,340 + BACOVA_02066 0.38 -0.3 386,385 + BACOVA_02066 0.44 +0.5 386,405 - BACOVA_02066 0.47 -1.0 386,448 + BACOVA_02066 0.53 +2.2 386,501 - BACOVA_02066 0.61 -2.5 386,501 - BACOVA_02066 0.61 +2.6 386,501 - BACOVA_02066 0.61 -0.6 386,503 - BACOVA_02066 0.61 -1.5 386,518 + BACOVA_02066 0.63 -1.8 386,518 + BACOVA_02066 0.63 +0.1 386,586 - BACOVA_02066 0.73 -0.5 386,600 + BACOVA_02066 0.75 -0.5 386,600 - BACOVA_02066 0.75 -0.8 386,603 - BACOVA_02066 0.75 +1.2 386,603 - BACOVA_02066 0.75 +0.1 386,618 + BACOVA_02066 0.77 +2.0 386,619 - BACOVA_02066 0.77 -0.2 386,691 - BACOVA_02066 0.88 +1.4 386,762 - -0.9 386,762 - -0.9 386,763 + +1.4 386,763 + -1.5 386,763 + +1.4 386,763 + -0.1 386,763 + +1.7 386,764 - -1.0 386,767 + +0.3 386,767 + +1.5 386,767 + -0.9 386,768 - -1.7 386,768 - -1.5 386,768 - +2.0 386,780 + -0.4 386,804 + +0.2 386,805 - +2.7 386,821 - -0.7 386,821 - -1.8 386,917 + -0.2 386,921 + -1.9 386,929 - +1.1 386,949 - +2.4 386,957 + +1.5 386,974 - +0.1 386,974 - -0.2 386,974 - +0.1 386,988 + -0.8 387,000 + -0.2 387,001 - -0.9 387,014 - -1.1 387,021 + -2.0 387,035 - +2.7 387,092 - -0.6 387,097 + +0.2 387,097 + -0.4 387,109 + -1.6 387,110 - +1.4 387,111 + -0.2 387,111 + -1.6 387,111 + +2.4 387,112 - -1.7 387,112 - +1.2 387,112 - +0.8 387,112 - +0.2 387,121 + -0.8 387,141 + +0.4 387,141 + +1.2 387,141 + -1.5 387,146 - -1.2 387,221 + BACOVA_02067 0.12 -2.0 387,229 + BACOVA_02067 0.13 +0.8 387,257 + BACOVA_02067 0.15 -0.6 387,257 + BACOVA_02067 0.15 -1.3 387,258 - BACOVA_02067 0.15 -2.4 387,258 - BACOVA_02067 0.15 +0.6 387,326 - BACOVA_02067 0.19 -0.9 387,326 - BACOVA_02067 0.19 -0.7 387,338 + BACOVA_02067 0.20 +0.4 387,338 + BACOVA_02067 0.20 -1.1 387,463 + BACOVA_02067 0.28 -2.3 387,509 + BACOVA_02067 0.31 -0.0 387,510 - BACOVA_02067 0.31 -0.7 387,510 - BACOVA_02067 0.31 -0.3 387,518 + BACOVA_02067 0.32 -0.7 387,519 - BACOVA_02067 0.32 +0.8 387,519 - BACOVA_02067 0.32 -1.1 387,581 - BACOVA_02067 0.36 -1.8 387,605 - BACOVA_02067 0.37 -0.4 387,674 - BACOVA_02067 0.42 -1.7 387,674 - BACOVA_02067 0.42 -0.5 387,714 - BACOVA_02067 0.44 -0.3 387,718 + BACOVA_02067 0.44 -0.4 387,719 - BACOVA_02067 0.44 +1.9 387,870 - BACOVA_02067 0.54 -1.4 387,870 - BACOVA_02067 0.54 -0.6 387,884 - BACOVA_02067 0.55 +2.4 387,894 + BACOVA_02067 0.56 -0.9 387,894 + BACOVA_02067 0.56 +2.0 387,895 - BACOVA_02067 0.56 -1.5 387,899 - BACOVA_02067 0.56 +1.4 387,946 - BACOVA_02067 0.59 -2.6 387,983 - BACOVA_02067 0.62 -0.8 388,034 + BACOVA_02067 0.65 +0.1 388,034 + BACOVA_02067 0.65 -1.5 388,035 - BACOVA_02067 0.65 +1.3 388,079 + BACOVA_02067 0.68 +0.4 388,080 - BACOVA_02067 0.68 +0.1 388,080 - BACOVA_02067 0.68 +1.2 388,095 - BACOVA_02067 0.69 +0.1 388,107 + BACOVA_02067 0.70 -1.4 388,135 + BACOVA_02067 0.71 -1.3 388,179 - BACOVA_02067 0.74 +1.8 388,196 - BACOVA_02067 0.75 -0.6 388,385 + BACOVA_02067 0.87 -2.0 388,386 - BACOVA_02067 0.87 +0.9 388,386 - BACOVA_02067 0.87 -1.5 388,386 - BACOVA_02067 0.87 -0.6 388,390 + BACOVA_02067 0.88 +0.2 388,429 + +2.4 388,448 + +1.4 388,500 - +2.4 388,505 + +1.9 388,505 + -0.4 388,506 - +0.8 388,506 - +2.4 388,506 - -0.2 388,506 - -0.8 388,506 - +0.9 388,508 - +1.4 388,550 + -0.6 388,551 - +1.2 388,551 - -0.8 388,551 - -0.4 388,574 + -0.8 388,579 + -1.2 388,601 + +1.6 388,652 + +0.4 388,663 - -2.6 388,672 + +2.5 388,677 - -1.0 388,702 + -1.1 388,808 - BACOVA_02068 0.25 -1.0 388,813 + BACOVA_02068 0.26 -1.3 388,814 - BACOVA_02068 0.26 -0.9 388,814 - BACOVA_02068 0.26 -1.2 388,864 + BACOVA_02068 0.35 -0.6 388,864 + BACOVA_02068 0.35 -0.5 388,896 + BACOVA_02068 0.41 +0.3 388,896 + BACOVA_02068 0.41 -0.6 388,897 - BACOVA_02068 0.41 -1.5 388,897 - BACOVA_02068 0.41 -1.3 388,897 - BACOVA_02068 0.41 +2.0 388,899 - BACOVA_02068 0.41 -1.9 388,899 - BACOVA_02068 0.41 -0.2 388,899 - BACOVA_02068 0.41 -1.5 389,031 - BACOVA_02068 0.65 -2.5 389,090 + BACOVA_02068 0.75 -1.0 389,091 - BACOVA_02068 0.75 +0.1 389,091 - BACOVA_02068 0.75 -0.6 389,099 - BACOVA_02068 0.77 -2.2 389,118 - BACOVA_02068 0.80 -0.8 389,231 - +0.1 389,237 + +0.3 389,255 + -1.8 389,270 - -0.7 389,271 + -0.9 389,272 - +0.1 389,315 + -0.3 389,387 - +0.4 389,397 + +1.1 389,398 - -1.1 389,399 + -0.9 389,413 + -0.7 389,437 + -1.6 389,437 + +0.4 389,438 - -0.3 389,469 + BACOVA_02069 0.11 -0.1 389,470 - BACOVA_02069 0.11 -0.6 389,506 + BACOVA_02069 0.17 -2.3 389,521 + BACOVA_02069 0.20 -1.2 389,552 + BACOVA_02069 0.26 +1.4 389,578 - BACOVA_02069 0.30 -0.1
Or see this region's nucleotide sequence