Experiment: amylopectin from maize 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02016 and BACOVA_02017 are separated by 22 nucleotides BACOVA_02017 and BACOVA_02018 are separated by 121 nucleotides BACOVA_02018 and BACOVA_02019 are separated by 87 nucleotides
BACOVA_02016: BACOVA_02016 - auxiliary transport protein, membrane fusion protein (MFP) family protein, at 319,515 to 320,606
_02016
BACOVA_02017: BACOVA_02017 - outer membrane efflux protein, at 320,629 to 321,960
_02017
BACOVA_02018: BACOVA_02018 - hypothetical protein, at 322,082 to 322,264
_02018
BACOVA_02019: BACOVA_02019 - hypothetical protein, at 322,352 to 322,948
_02019
Position (kb) 320
321
322 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 319.663 kb on + strand, within BACOVA_02016 at 319.688 kb on + strand, within BACOVA_02016 at 319.689 kb on - strand, within BACOVA_02016 at 319.743 kb on + strand, within BACOVA_02016 at 319.743 kb on + strand, within BACOVA_02016 at 319.744 kb on - strand, within BACOVA_02016 at 319.744 kb on - strand, within BACOVA_02016 at 319.744 kb on - strand, within BACOVA_02016 at 319.784 kb on + strand, within BACOVA_02016 at 319.786 kb on + strand, within BACOVA_02016 at 319.786 kb on + strand, within BACOVA_02016 at 319.826 kb on - strand, within BACOVA_02016 at 319.902 kb on + strand, within BACOVA_02016 at 319.905 kb on + strand, within BACOVA_02016 at 319.905 kb on + strand, within BACOVA_02016 at 319.906 kb on - strand, within BACOVA_02016 at 319.914 kb on - strand, within BACOVA_02016 at 319.977 kb on - strand, within BACOVA_02016 at 320.004 kb on + strand, within BACOVA_02016 at 320.004 kb on + strand, within BACOVA_02016 at 320.040 kb on - strand, within BACOVA_02016 at 320.060 kb on + strand, within BACOVA_02016 at 320.166 kb on + strand, within BACOVA_02016 at 320.228 kb on + strand, within BACOVA_02016 at 320.228 kb on + strand, within BACOVA_02016 at 320.229 kb on - strand, within BACOVA_02016 at 320.229 kb on - strand, within BACOVA_02016 at 320.297 kb on + strand, within BACOVA_02016 at 320.297 kb on + strand, within BACOVA_02016 at 320.297 kb on + strand, within BACOVA_02016 at 320.336 kb on + strand, within BACOVA_02016 at 320.337 kb on - strand, within BACOVA_02016 at 320.337 kb on - strand, within BACOVA_02016 at 320.337 kb on - strand, within BACOVA_02016 at 320.337 kb on - strand, within BACOVA_02016 at 320.363 kb on - strand, within BACOVA_02016 at 320.377 kb on + strand, within BACOVA_02016 at 320.378 kb on - strand, within BACOVA_02016 at 320.391 kb on + strand, within BACOVA_02016 at 320.400 kb on - strand, within BACOVA_02016 at 320.410 kb on + strand, within BACOVA_02016 at 320.410 kb on + strand, within BACOVA_02016 at 320.411 kb on - strand, within BACOVA_02016 at 320.419 kb on - strand, within BACOVA_02016 at 320.435 kb on + strand, within BACOVA_02016 at 320.499 kb on - strand at 320.520 kb on - strand at 320.574 kb on - strand at 320.574 kb on - strand at 320.610 kb on + strand at 320.610 kb on + strand at 320.610 kb on + strand at 320.611 kb on - strand at 320.611 kb on - strand at 320.611 kb on - strand at 320.619 kb on + strand at 320.631 kb on - strand at 320.648 kb on - strand at 320.694 kb on + strand at 320.694 kb on + strand at 320.694 kb on + strand at 320.695 kb on - strand at 320.696 kb on + strand at 320.697 kb on - strand at 320.697 kb on - strand at 320.697 kb on - strand at 320.697 kb on - strand at 320.697 kb on - strand at 320.711 kb on + strand at 320.712 kb on - strand at 320.763 kb on + strand, within BACOVA_02017 at 320.764 kb on - strand, within BACOVA_02017 at 320.825 kb on + strand, within BACOVA_02017 at 320.825 kb on + strand, within BACOVA_02017 at 320.889 kb on - strand, within BACOVA_02017 at 320.941 kb on + strand, within BACOVA_02017 at 320.976 kb on + strand, within BACOVA_02017 at 321.000 kb on + strand, within BACOVA_02017 at 321.001 kb on - strand, within BACOVA_02017 at 321.081 kb on + strand, within BACOVA_02017 at 321.081 kb on + strand, within BACOVA_02017 at 321.081 kb on + strand, within BACOVA_02017 at 321.082 kb on - strand, within BACOVA_02017 at 321.084 kb on - strand, within BACOVA_02017 at 321.127 kb on - strand, within BACOVA_02017 at 321.136 kb on - strand, within BACOVA_02017 at 321.136 kb on - strand, within BACOVA_02017 at 321.138 kb on + strand, within BACOVA_02017 at 321.139 kb on - strand, within BACOVA_02017 at 321.197 kb on + strand, within BACOVA_02017 at 321.234 kb on + strand, within BACOVA_02017 at 321.234 kb on + strand, within BACOVA_02017 at 321.296 kb on + strand, within BACOVA_02017 at 321.296 kb on + strand, within BACOVA_02017 at 321.306 kb on + strand, within BACOVA_02017 at 321.307 kb on - strand, within BACOVA_02017 at 321.344 kb on + strand, within BACOVA_02017 at 321.373 kb on - strand, within BACOVA_02017 at 321.399 kb on + strand, within BACOVA_02017 at 321.429 kb on + strand, within BACOVA_02017 at 321.432 kb on + strand, within BACOVA_02017 at 321.432 kb on + strand, within BACOVA_02017 at 321.459 kb on + strand, within BACOVA_02017 at 321.459 kb on + strand, within BACOVA_02017 at 321.460 kb on - strand, within BACOVA_02017 at 321.509 kb on + strand, within BACOVA_02017 at 321.510 kb on - strand, within BACOVA_02017 at 321.531 kb on + strand, within BACOVA_02017 at 321.531 kb on + strand, within BACOVA_02017 at 321.586 kb on - strand, within BACOVA_02017 at 321.597 kb on + strand, within BACOVA_02017 at 321.598 kb on - strand, within BACOVA_02017 at 321.598 kb on - strand, within BACOVA_02017 at 321.603 kb on + strand, within BACOVA_02017 at 321.604 kb on - strand, within BACOVA_02017 at 321.678 kb on + strand, within BACOVA_02017 at 321.679 kb on - strand, within BACOVA_02017 at 321.681 kb on + strand, within BACOVA_02017 at 321.682 kb on - strand, within BACOVA_02017 at 321.682 kb on - strand, within BACOVA_02017 at 321.683 kb on + strand, within BACOVA_02017 at 321.683 kb on + strand, within BACOVA_02017 at 321.683 kb on + strand, within BACOVA_02017 at 321.683 kb on + strand, within BACOVA_02017 at 321.683 kb on + strand, within BACOVA_02017 at 321.695 kb on + strand, within BACOVA_02017 at 321.738 kb on + strand, within BACOVA_02017 at 321.742 kb on - strand, within BACOVA_02017 at 321.742 kb on - strand, within BACOVA_02017 at 321.793 kb on + strand, within BACOVA_02017 at 321.800 kb on + strand, within BACOVA_02017 at 321.800 kb on + strand, within BACOVA_02017 at 321.800 kb on + strand, within BACOVA_02017 at 321.847 kb on - strand at 321.893 kb on - strand at 321.920 kb on - strand at 321.964 kb on - strand at 321.965 kb on + strand at 321.965 kb on + strand at 321.965 kb on + strand at 321.966 kb on - strand at 321.966 kb on - strand at 321.966 kb on - strand at 321.975 kb on + strand at 322.005 kb on + strand at 322.005 kb on + strand at 322.005 kb on + strand at 322.005 kb on + strand at 322.005 kb on + strand at 322.005 kb on + strand at 322.006 kb on - strand at 322.035 kb on + strand at 322.090 kb on - strand at 322.115 kb on - strand, within BACOVA_02018 at 322.121 kb on + strand, within BACOVA_02018 at 322.121 kb on + strand, within BACOVA_02018 at 322.122 kb on - strand, within BACOVA_02018 at 322.162 kb on - strand, within BACOVA_02018 at 322.215 kb on + strand, within BACOVA_02018 at 322.216 kb on - strand, within BACOVA_02018 at 322.216 kb on - strand, within BACOVA_02018 at 322.304 kb on + strand at 322.304 kb on + strand at 322.305 kb on - strand at 322.308 kb on + strand at 322.309 kb on - strand at 322.309 kb on - strand at 322.309 kb on - strand at 322.312 kb on + strand at 322.312 kb on + strand at 322.312 kb on + strand at 322.336 kb on - strand at 322.375 kb on - strand at 322.392 kb on + strand at 322.392 kb on + strand at 322.412 kb on - strand, within BACOVA_02019 at 322.430 kb on + strand, within BACOVA_02019 at 322.431 kb on - strand, within BACOVA_02019 at 322.525 kb on + strand, within BACOVA_02019 at 322.553 kb on + strand, within BACOVA_02019 at 322.553 kb on + strand, within BACOVA_02019 at 322.554 kb on - strand, within BACOVA_02019 at 322.555 kb on + strand, within BACOVA_02019 at 322.556 kb on - strand, within BACOVA_02019 at 322.568 kb on - strand, within BACOVA_02019 at 322.568 kb on - strand, within BACOVA_02019 at 322.607 kb on - strand, within BACOVA_02019 at 322.757 kb on - strand, within BACOVA_02019 at 322.871 kb on - strand, within BACOVA_02019 at 322.903 kb on + strand at 322.960 kb on + strand at 322.960 kb on + strand at 322.960 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction amylopectin from maize 2.5 mg/ml (C) remove 319,663 + BACOVA_02016 0.14 +2.3 319,688 + BACOVA_02016 0.16 +0.2 319,689 - BACOVA_02016 0.16 -1.1 319,743 + BACOVA_02016 0.21 -2.8 319,743 + BACOVA_02016 0.21 -0.4 319,744 - BACOVA_02016 0.21 +0.1 319,744 - BACOVA_02016 0.21 -1.8 319,744 - BACOVA_02016 0.21 -1.5 319,784 + BACOVA_02016 0.25 +1.2 319,786 + BACOVA_02016 0.25 +0.1 319,786 + BACOVA_02016 0.25 -0.2 319,826 - BACOVA_02016 0.28 -0.9 319,902 + BACOVA_02016 0.35 -0.3 319,905 + BACOVA_02016 0.36 -0.4 319,905 + BACOVA_02016 0.36 -0.2 319,906 - BACOVA_02016 0.36 +0.2 319,914 - BACOVA_02016 0.37 +1.6 319,977 - BACOVA_02016 0.42 -1.4 320,004 + BACOVA_02016 0.45 -0.3 320,004 + BACOVA_02016 0.45 +1.1 320,040 - BACOVA_02016 0.48 +2.5 320,060 + BACOVA_02016 0.50 +1.7 320,166 + BACOVA_02016 0.60 -0.1 320,228 + BACOVA_02016 0.65 +2.4 320,228 + BACOVA_02016 0.65 -1.9 320,229 - BACOVA_02016 0.65 -0.1 320,229 - BACOVA_02016 0.65 -1.3 320,297 + BACOVA_02016 0.72 +2.6 320,297 + BACOVA_02016 0.72 -0.2 320,297 + BACOVA_02016 0.72 +0.1 320,336 + BACOVA_02016 0.75 +0.6 320,337 - BACOVA_02016 0.75 -2.0 320,337 - BACOVA_02016 0.75 +1.4 320,337 - BACOVA_02016 0.75 -1.3 320,337 - BACOVA_02016 0.75 -0.8 320,363 - BACOVA_02016 0.78 -0.8 320,377 + BACOVA_02016 0.79 +2.0 320,378 - BACOVA_02016 0.79 -0.2 320,391 + BACOVA_02016 0.80 -0.2 320,400 - BACOVA_02016 0.81 -1.5 320,410 + BACOVA_02016 0.82 +0.8 320,410 + BACOVA_02016 0.82 +0.3 320,411 - BACOVA_02016 0.82 +1.4 320,419 - BACOVA_02016 0.83 -2.3 320,435 + BACOVA_02016 0.84 -0.8 320,499 - -1.0 320,520 - +0.6 320,574 - -1.5 320,574 - +0.8 320,610 + -1.2 320,610 + -1.4 320,610 + -1.7 320,611 - -1.8 320,611 - -0.3 320,611 - -0.4 320,619 + -0.2 320,631 - -1.2 320,648 - +0.1 320,694 + -1.0 320,694 + +0.2 320,694 + -0.3 320,695 - +0.2 320,696 + -1.3 320,697 - +0.2 320,697 - -0.2 320,697 - +1.6 320,697 - +0.6 320,697 - -0.5 320,711 + -0.1 320,712 - -1.0 320,763 + BACOVA_02017 0.10 -0.3 320,764 - BACOVA_02017 0.10 -3.2 320,825 + BACOVA_02017 0.15 +0.1 320,825 + BACOVA_02017 0.15 -1.1 320,889 - BACOVA_02017 0.20 -1.2 320,941 + BACOVA_02017 0.23 -3.1 320,976 + BACOVA_02017 0.26 -2.8 321,000 + BACOVA_02017 0.28 -1.2 321,001 - BACOVA_02017 0.28 +1.6 321,081 + BACOVA_02017 0.34 +0.2 321,081 + BACOVA_02017 0.34 -0.9 321,081 + BACOVA_02017 0.34 +0.7 321,082 - BACOVA_02017 0.34 +1.5 321,084 - BACOVA_02017 0.34 -1.8 321,127 - BACOVA_02017 0.37 -0.6 321,136 - BACOVA_02017 0.38 +0.8 321,136 - BACOVA_02017 0.38 +0.2 321,138 + BACOVA_02017 0.38 +2.8 321,139 - BACOVA_02017 0.38 -0.4 321,197 + BACOVA_02017 0.43 -1.1 321,234 + BACOVA_02017 0.45 +0.4 321,234 + BACOVA_02017 0.45 -0.4 321,296 + BACOVA_02017 0.50 +0.5 321,296 + BACOVA_02017 0.50 +0.7 321,306 + BACOVA_02017 0.51 -2.2 321,307 - BACOVA_02017 0.51 -0.4 321,344 + BACOVA_02017 0.54 -2.6 321,373 - BACOVA_02017 0.56 -0.5 321,399 + BACOVA_02017 0.58 -0.5 321,429 + BACOVA_02017 0.60 +0.1 321,432 + BACOVA_02017 0.60 -2.6 321,432 + BACOVA_02017 0.60 -0.6 321,459 + BACOVA_02017 0.62 -0.6 321,459 + BACOVA_02017 0.62 -1.6 321,460 - BACOVA_02017 0.62 +1.4 321,509 + BACOVA_02017 0.66 +2.5 321,510 - BACOVA_02017 0.66 -0.0 321,531 + BACOVA_02017 0.68 +0.6 321,531 + BACOVA_02017 0.68 -0.3 321,586 - BACOVA_02017 0.72 -1.1 321,597 + BACOVA_02017 0.73 +2.7 321,598 - BACOVA_02017 0.73 +0.1 321,598 - BACOVA_02017 0.73 -0.8 321,603 + BACOVA_02017 0.73 -0.6 321,604 - BACOVA_02017 0.73 -1.3 321,678 + BACOVA_02017 0.79 +0.5 321,679 - BACOVA_02017 0.79 -1.2 321,681 + BACOVA_02017 0.79 -1.9 321,682 - BACOVA_02017 0.79 +1.1 321,682 - BACOVA_02017 0.79 -0.3 321,683 + BACOVA_02017 0.79 -0.6 321,683 + BACOVA_02017 0.79 -1.1 321,683 + BACOVA_02017 0.79 +0.6 321,683 + BACOVA_02017 0.79 +1.2 321,683 + BACOVA_02017 0.79 -0.7 321,695 + BACOVA_02017 0.80 -0.9 321,738 + BACOVA_02017 0.83 +2.4 321,742 - BACOVA_02017 0.84 -1.5 321,742 - BACOVA_02017 0.84 -2.1 321,793 + BACOVA_02017 0.87 -0.7 321,800 + BACOVA_02017 0.88 -0.8 321,800 + BACOVA_02017 0.88 -1.1 321,800 + BACOVA_02017 0.88 -0.5 321,847 - -0.2 321,893 - +0.1 321,920 - +2.2 321,964 - -0.6 321,965 + -1.5 321,965 + -2.0 321,965 + +1.0 321,966 - +0.7 321,966 - +2.1 321,966 - -1.7 321,975 + +1.0 322,005 + -1.1 322,005 + -2.6 322,005 + -1.7 322,005 + -0.6 322,005 + +0.2 322,005 + -2.6 322,006 - +0.8 322,035 + -2.5 322,090 - +1.5 322,115 - BACOVA_02018 0.18 -1.4 322,121 + BACOVA_02018 0.21 -0.8 322,121 + BACOVA_02018 0.21 +0.2 322,122 - BACOVA_02018 0.22 -1.4 322,162 - BACOVA_02018 0.44 +2.6 322,215 + BACOVA_02018 0.73 +0.4 322,216 - BACOVA_02018 0.73 -0.8 322,216 - BACOVA_02018 0.73 -0.4 322,304 + -1.1 322,304 + -0.0 322,305 - -0.3 322,308 + -1.4 322,309 - +0.5 322,309 - -1.5 322,309 - +2.4 322,312 + -1.4 322,312 + +0.4 322,312 + -0.2 322,336 - +0.4 322,375 - -1.5 322,392 + -1.4 322,392 + +0.6 322,412 - BACOVA_02019 0.10 +1.8 322,430 + BACOVA_02019 0.13 -0.8 322,431 - BACOVA_02019 0.13 +2.4 322,525 + BACOVA_02019 0.29 +2.0 322,553 + BACOVA_02019 0.34 +1.1 322,553 + BACOVA_02019 0.34 -1.9 322,554 - BACOVA_02019 0.34 +0.2 322,555 + BACOVA_02019 0.34 -0.4 322,556 - BACOVA_02019 0.34 +1.8 322,568 - BACOVA_02019 0.36 +0.4 322,568 - BACOVA_02019 0.36 +0.4 322,607 - BACOVA_02019 0.43 -1.4 322,757 - BACOVA_02019 0.68 -0.9 322,871 - BACOVA_02019 0.87 +0.6 322,903 + -0.2 322,960 + +1.4 322,960 + -1.7 322,960 + -0.4
Or see this region's nucleotide sequence