Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02000

Experiment: amylopectin from maize 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_01999 and BACOVA_02000 are separated by 30 nucleotidesBACOVA_02000 and BACOVA_02001 are separated by 144 nucleotides BACOVA_01999: BACOVA_01999 - SusD family protein, at 237,297 to 239,069 _01999 BACOVA_02000: BACOVA_02000 - hypothetical protein, at 239,100 to 240,200 _02000 BACOVA_02001: BACOVA_02001 - dihydrouridine synthase (Dus), at 240,345 to 241,289 _02001 Position (kb) 239 240 241Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 238.102 kb on - strand, within BACOVA_01999at 238.102 kb on - strand, within BACOVA_01999at 238.133 kb on + strand, within BACOVA_01999at 238.133 kb on + strand, within BACOVA_01999at 238.137 kb on + strand, within BACOVA_01999at 238.138 kb on - strand, within BACOVA_01999at 238.139 kb on + strand, within BACOVA_01999at 238.193 kb on - strand, within BACOVA_01999at 238.222 kb on + strand, within BACOVA_01999at 238.223 kb on - strand, within BACOVA_01999at 238.236 kb on - strand, within BACOVA_01999at 238.321 kb on - strand, within BACOVA_01999at 238.436 kb on + strand, within BACOVA_01999at 238.437 kb on - strand, within BACOVA_01999at 238.515 kb on + strand, within BACOVA_01999at 238.543 kb on - strand, within BACOVA_01999at 238.587 kb on - strand, within BACOVA_01999at 238.587 kb on - strand, within BACOVA_01999at 238.614 kb on + strand, within BACOVA_01999at 238.643 kb on + strand, within BACOVA_01999at 238.644 kb on - strand, within BACOVA_01999at 238.740 kb on + strand, within BACOVA_01999at 238.740 kb on + strand, within BACOVA_01999at 238.748 kb on + strand, within BACOVA_01999at 238.863 kb on - strand, within BACOVA_01999at 238.863 kb on - strand, within BACOVA_01999at 238.897 kb on - strandat 238.897 kb on - strandat 238.966 kb on + strandat 238.966 kb on + strandat 238.966 kb on + strandat 238.967 kb on - strandat 238.967 kb on - strandat 238.968 kb on + strandat 238.970 kb on + strandat 238.970 kb on + strandat 238.971 kb on - strandat 238.971 kb on - strandat 238.975 kb on - strandat 238.975 kb on - strandat 238.982 kb on + strandat 239.001 kb on + strandat 239.042 kb on + strandat 239.079 kb on + strandat 239.108 kb on - strandat 239.115 kb on - strandat 239.129 kb on + strandat 239.146 kb on + strandat 239.321 kb on - strand, within BACOVA_02000at 239.332 kb on - strand, within BACOVA_02000at 239.398 kb on + strand, within BACOVA_02000at 239.399 kb on - strand, within BACOVA_02000at 239.401 kb on + strand, within BACOVA_02000at 239.401 kb on + strand, within BACOVA_02000at 239.402 kb on - strand, within BACOVA_02000at 239.402 kb on - strand, within BACOVA_02000at 239.403 kb on + strand, within BACOVA_02000at 239.404 kb on - strand, within BACOVA_02000at 239.409 kb on + strand, within BACOVA_02000at 239.409 kb on + strand, within BACOVA_02000at 239.409 kb on + strand, within BACOVA_02000at 239.409 kb on + strand, within BACOVA_02000at 239.410 kb on - strand, within BACOVA_02000at 239.414 kb on + strand, within BACOVA_02000at 239.438 kb on + strand, within BACOVA_02000at 239.439 kb on - strand, within BACOVA_02000at 239.439 kb on - strand, within BACOVA_02000at 239.446 kb on + strand, within BACOVA_02000at 239.447 kb on - strand, within BACOVA_02000at 239.449 kb on + strand, within BACOVA_02000at 239.449 kb on + strand, within BACOVA_02000at 239.514 kb on - strand, within BACOVA_02000at 239.570 kb on + strand, within BACOVA_02000at 239.593 kb on + strand, within BACOVA_02000at 239.596 kb on + strand, within BACOVA_02000at 239.601 kb on + strand, within BACOVA_02000at 239.649 kb on - strand, within BACOVA_02000at 239.651 kb on + strand, within BACOVA_02000at 239.669 kb on - strand, within BACOVA_02000at 239.671 kb on + strand, within BACOVA_02000at 239.672 kb on - strand, within BACOVA_02000at 239.675 kb on + strand, within BACOVA_02000at 239.675 kb on + strand, within BACOVA_02000at 239.678 kb on + strand, within BACOVA_02000at 239.678 kb on + strand, within BACOVA_02000at 239.678 kb on + strand, within BACOVA_02000at 239.679 kb on - strand, within BACOVA_02000at 239.729 kb on + strand, within BACOVA_02000at 239.730 kb on - strand, within BACOVA_02000at 239.730 kb on - strand, within BACOVA_02000at 239.730 kb on - strand, within BACOVA_02000at 239.770 kb on - strand, within BACOVA_02000at 239.777 kb on - strand, within BACOVA_02000at 239.816 kb on + strand, within BACOVA_02000at 239.834 kb on + strand, within BACOVA_02000at 239.872 kb on - strand, within BACOVA_02000at 239.879 kb on + strand, within BACOVA_02000at 239.879 kb on + strand, within BACOVA_02000at 239.889 kb on + strand, within BACOVA_02000at 239.889 kb on + strand, within BACOVA_02000at 239.900 kb on - strand, within BACOVA_02000at 239.906 kb on + strand, within BACOVA_02000at 239.974 kb on - strand, within BACOVA_02000at 239.975 kb on + strand, within BACOVA_02000at 239.976 kb on - strand, within BACOVA_02000at 239.987 kb on + strand, within BACOVA_02000at 239.987 kb on + strand, within BACOVA_02000at 239.996 kb on + strand, within BACOVA_02000at 240.046 kb on + strand, within BACOVA_02000at 240.046 kb on + strand, within BACOVA_02000at 240.047 kb on - strand, within BACOVA_02000at 240.059 kb on + strand, within BACOVA_02000at 240.079 kb on + strand, within BACOVA_02000at 240.080 kb on - strand, within BACOVA_02000at 240.089 kb on + strand, within BACOVA_02000at 240.089 kb on + strand, within BACOVA_02000at 240.090 kb on - strand, within BACOVA_02000at 240.090 kb on - strand, within BACOVA_02000at 240.090 kb on - strand, within BACOVA_02000at 240.090 kb on - strand, within BACOVA_02000at 240.107 kb on + strandat 240.112 kb on - strandat 240.112 kb on - strandat 240.112 kb on - strandat 240.113 kb on + strandat 240.114 kb on - strandat 240.144 kb on + strandat 240.166 kb on + strandat 240.169 kb on + strandat 240.182 kb on + strandat 240.193 kb on + strandat 240.204 kb on + strandat 240.271 kb on + strandat 240.341 kb on + strandat 240.344 kb on - strandat 240.363 kb on - strandat 240.379 kb on + strandat 240.379 kb on + strandat 240.388 kb on - strandat 240.435 kb on - strandat 240.436 kb on + strandat 240.437 kb on - strandat 240.437 kb on - strandat 240.437 kb on - strandat 240.437 kb on - strandat 240.440 kb on + strand, within BACOVA_02001at 240.444 kb on + strand, within BACOVA_02001at 240.444 kb on + strand, within BACOVA_02001at 240.445 kb on - strand, within BACOVA_02001at 240.445 kb on - strand, within BACOVA_02001at 240.449 kb on + strand, within BACOVA_02001at 240.450 kb on - strand, within BACOVA_02001at 240.583 kb on + strand, within BACOVA_02001at 240.584 kb on - strand, within BACOVA_02001at 240.606 kb on + strand, within BACOVA_02001at 240.608 kb on + strand, within BACOVA_02001at 240.608 kb on + strand, within BACOVA_02001at 240.609 kb on - strand, within BACOVA_02001at 240.649 kb on + strand, within BACOVA_02001at 240.651 kb on - strand, within BACOVA_02001at 240.653 kb on + strand, within BACOVA_02001at 240.654 kb on - strand, within BACOVA_02001at 240.700 kb on + strand, within BACOVA_02001at 240.706 kb on + strand, within BACOVA_02001at 240.707 kb on - strand, within BACOVA_02001at 240.710 kb on + strand, within BACOVA_02001at 240.720 kb on - strand, within BACOVA_02001at 240.727 kb on - strand, within BACOVA_02001at 240.804 kb on - strand, within BACOVA_02001at 240.804 kb on - strand, within BACOVA_02001at 240.815 kb on - strand, within BACOVA_02001at 240.927 kb on + strand, within BACOVA_02001at 240.927 kb on + strand, within BACOVA_02001at 240.928 kb on - strand, within BACOVA_02001at 240.938 kb on + strand, within BACOVA_02001at 240.938 kb on + strand, within BACOVA_02001at 240.944 kb on + strand, within BACOVA_02001at 240.945 kb on - strand, within BACOVA_02001at 240.949 kb on + strand, within BACOVA_02001at 240.950 kb on - strand, within BACOVA_02001at 240.950 kb on - strand, within BACOVA_02001at 240.950 kb on - strand, within BACOVA_02001at 240.950 kb on - strand, within BACOVA_02001at 240.957 kb on - strand, within BACOVA_02001at 241.004 kb on - strand, within BACOVA_02001at 241.046 kb on + strand, within BACOVA_02001at 241.097 kb on + strand, within BACOVA_02001at 241.098 kb on - strand, within BACOVA_02001at 241.186 kb on - strand, within BACOVA_02001

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Per-strain Table

Position Strand Gene LocusTag Fraction amylopectin from maize 2.5 mg/ml (C)
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238,102 - BACOVA_01999 0.45 -2.5
238,102 - BACOVA_01999 0.45 -0.6
238,133 + BACOVA_01999 0.47 -0.9
238,133 + BACOVA_01999 0.47 -0.6
238,137 + BACOVA_01999 0.47 +0.0
238,138 - BACOVA_01999 0.47 -1.3
238,139 + BACOVA_01999 0.47 -1.2
238,193 - BACOVA_01999 0.51 +1.1
238,222 + BACOVA_01999 0.52 -0.9
238,223 - BACOVA_01999 0.52 -0.1
238,236 - BACOVA_01999 0.53 -0.9
238,321 - BACOVA_01999 0.58 -0.5
238,436 + BACOVA_01999 0.64 +2.0
238,437 - BACOVA_01999 0.64 +0.6
238,515 + BACOVA_01999 0.69 +0.6
238,543 - BACOVA_01999 0.70 +0.1
238,587 - BACOVA_01999 0.73 +0.9
238,587 - BACOVA_01999 0.73 +0.4
238,614 + BACOVA_01999 0.74 -0.9
238,643 + BACOVA_01999 0.76 +0.5
238,644 - BACOVA_01999 0.76 -0.2
238,740 + BACOVA_01999 0.81 -1.0
238,740 + BACOVA_01999 0.81 +0.9
238,748 + BACOVA_01999 0.82 -0.1
238,863 - BACOVA_01999 0.88 -1.7
238,863 - BACOVA_01999 0.88 -1.3
238,897 - +2.7
238,897 - +1.3
238,966 + -0.9
238,966 + +1.4
238,966 + +1.4
238,967 - +0.4
238,967 - -0.6
238,968 + +1.4
238,970 + -0.7
238,970 + +0.7
238,971 - -2.4
238,971 - +1.5
238,975 - -0.0
238,975 - +0.1
238,982 + -2.0
239,001 + +1.0
239,042 + +0.9
239,079 + +0.4
239,108 - -1.0
239,115 - -1.0
239,129 + -3.3
239,146 + +1.5
239,321 - BACOVA_02000 0.20 -2.1
239,332 - BACOVA_02000 0.21 +0.2
239,398 + BACOVA_02000 0.27 -3.1
239,399 - BACOVA_02000 0.27 +0.1
239,401 + BACOVA_02000 0.27 +1.0
239,401 + BACOVA_02000 0.27 -0.7
239,402 - BACOVA_02000 0.27 -1.0
239,402 - BACOVA_02000 0.27 -1.7
239,403 + BACOVA_02000 0.28 +0.1
239,404 - BACOVA_02000 0.28 -0.2
239,409 + BACOVA_02000 0.28 -0.1
239,409 + BACOVA_02000 0.28 +1.7
239,409 + BACOVA_02000 0.28 -0.8
239,409 + BACOVA_02000 0.28 +1.8
239,410 - BACOVA_02000 0.28 -0.6
239,414 + BACOVA_02000 0.29 +0.9
239,438 + BACOVA_02000 0.31 +1.1
239,439 - BACOVA_02000 0.31 +0.1
239,439 - BACOVA_02000 0.31 +2.1
239,446 + BACOVA_02000 0.31 -0.8
239,447 - BACOVA_02000 0.32 +1.4
239,449 + BACOVA_02000 0.32 +3.2
239,449 + BACOVA_02000 0.32 +2.6
239,514 - BACOVA_02000 0.38 -0.6
239,570 + BACOVA_02000 0.43 -0.8
239,593 + BACOVA_02000 0.45 +0.9
239,596 + BACOVA_02000 0.45 +0.4
239,601 + BACOVA_02000 0.46 +0.6
239,649 - BACOVA_02000 0.50 -0.7
239,651 + BACOVA_02000 0.50 -0.4
239,669 - BACOVA_02000 0.52 +0.4
239,671 + BACOVA_02000 0.52 +0.2
239,672 - BACOVA_02000 0.52 -0.0
239,675 + BACOVA_02000 0.52 -0.9
239,675 + BACOVA_02000 0.52 +0.9
239,678 + BACOVA_02000 0.52 +1.4
239,678 + BACOVA_02000 0.52 +0.0
239,678 + BACOVA_02000 0.52 -0.9
239,679 - BACOVA_02000 0.53 +0.4
239,729 + BACOVA_02000 0.57 -0.7
239,730 - BACOVA_02000 0.57 -2.1
239,730 - BACOVA_02000 0.57 +2.1
239,730 - BACOVA_02000 0.57 -0.7
239,770 - BACOVA_02000 0.61 -0.6
239,777 - BACOVA_02000 0.61 -0.9
239,816 + BACOVA_02000 0.65 +0.4
239,834 + BACOVA_02000 0.67 +0.4
239,872 - BACOVA_02000 0.70 -2.1
239,879 + BACOVA_02000 0.71 +1.0
239,879 + BACOVA_02000 0.71 +2.2
239,889 + BACOVA_02000 0.72 -0.1
239,889 + BACOVA_02000 0.72 +2.6
239,900 - BACOVA_02000 0.73 +0.4
239,906 + BACOVA_02000 0.73 +1.0
239,974 - BACOVA_02000 0.79 -0.9
239,975 + BACOVA_02000 0.79 +2.1
239,976 - BACOVA_02000 0.80 +0.3
239,987 + BACOVA_02000 0.81 -0.1
239,987 + BACOVA_02000 0.81 -1.3
239,996 + BACOVA_02000 0.81 +0.1
240,046 + BACOVA_02000 0.86 -2.3
240,046 + BACOVA_02000 0.86 -0.6
240,047 - BACOVA_02000 0.86 -1.2
240,059 + BACOVA_02000 0.87 -1.9
240,079 + BACOVA_02000 0.89 -1.0
240,080 - BACOVA_02000 0.89 -1.7
240,089 + BACOVA_02000 0.90 -0.4
240,089 + BACOVA_02000 0.90 -1.0
240,090 - BACOVA_02000 0.90 -0.4
240,090 - BACOVA_02000 0.90 +1.4
240,090 - BACOVA_02000 0.90 -2.4
240,090 - BACOVA_02000 0.90 -0.1
240,107 + -0.6
240,112 - -0.4
240,112 - -0.9
240,112 - -1.7
240,113 + -1.4
240,114 - -0.8
240,144 + +3.6
240,166 + +1.9
240,169 + +0.9
240,182 + -1.8
240,193 + -1.4
240,204 + -1.0
240,271 + -1.0
240,341 + -0.0
240,344 - -1.5
240,363 - -0.1
240,379 + +0.1
240,379 + +1.9
240,388 - -0.6
240,435 - +0.9
240,436 + -0.1
240,437 - -0.4
240,437 - -2.0
240,437 - -3.0
240,437 - -0.4
240,440 + BACOVA_02001 0.10 +2.3
240,444 + BACOVA_02001 0.10 +0.4
240,444 + BACOVA_02001 0.10 +0.1
240,445 - BACOVA_02001 0.11 -1.4
240,445 - BACOVA_02001 0.11 +1.4
240,449 + BACOVA_02001 0.11 +1.0
240,450 - BACOVA_02001 0.11 -0.7
240,583 + BACOVA_02001 0.25 +0.1
240,584 - BACOVA_02001 0.25 -4.1
240,606 + BACOVA_02001 0.28 +2.1
240,608 + BACOVA_02001 0.28 -0.4
240,608 + BACOVA_02001 0.28 -0.7
240,609 - BACOVA_02001 0.28 -0.1
240,649 + BACOVA_02001 0.32 -2.6
240,651 - BACOVA_02001 0.32 -1.3
240,653 + BACOVA_02001 0.33 +0.2
240,654 - BACOVA_02001 0.33 -1.3
240,700 + BACOVA_02001 0.38 +0.4
240,706 + BACOVA_02001 0.38 -2.2
240,707 - BACOVA_02001 0.38 -0.1
240,710 + BACOVA_02001 0.39 +0.9
240,720 - BACOVA_02001 0.40 -0.0
240,727 - BACOVA_02001 0.40 -1.3
240,804 - BACOVA_02001 0.49 +2.9
240,804 - BACOVA_02001 0.49 -0.4
240,815 - BACOVA_02001 0.50 +2.1
240,927 + BACOVA_02001 0.62 -0.4
240,927 + BACOVA_02001 0.62 +1.8
240,928 - BACOVA_02001 0.62 +1.5
240,938 + BACOVA_02001 0.63 -0.5
240,938 + BACOVA_02001 0.63 +0.4
240,944 + BACOVA_02001 0.63 +0.2
240,945 - BACOVA_02001 0.63 +3.4
240,949 + BACOVA_02001 0.64 -1.3
240,950 - BACOVA_02001 0.64 -0.7
240,950 - BACOVA_02001 0.64 +0.1
240,950 - BACOVA_02001 0.64 -1.1
240,950 - BACOVA_02001 0.64 -0.6
240,957 - BACOVA_02001 0.65 -0.0
241,004 - BACOVA_02001 0.70 -0.4
241,046 + BACOVA_02001 0.74 +1.1
241,097 + BACOVA_02001 0.80 -0.3
241,098 - BACOVA_02001 0.80 +0.2
241,186 - BACOVA_02001 0.89 +0.9

Or see this region's nucleotide sequence