Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_01993

Experiment: amylopectin from maize 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_01992 and BACOVA_01993 overlap by 1 nucleotidesBACOVA_01993 and BACOVA_01994 are separated by 18 nucleotidesBACOVA_01994 and BACOVA_01995 are separated by 161 nucleotides BACOVA_01992: BACOVA_01992 - RND transporter, HAE1 family, at 221,527 to 224,958 _01992 BACOVA_01993: BACOVA_01993 - efflux transporter, outer membrane factor lipoprotein, NodT family, at 224,958 to 226,361 _01993 BACOVA_01994: BACOVA_01994 - acyl-[acyl-carrier-protein]-UDP-N- acetylglucosamine O-acyltransferase, at 226,380 to 227,150 _01994 BACOVA_01995: BACOVA_01995 - hypothetical protein, at 227,312 to 227,953 _01995 Position (kb) 224 225 226 227Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 223.983 kb on + strand, within BACOVA_01992at 223.993 kb on + strand, within BACOVA_01992at 224.008 kb on + strand, within BACOVA_01992at 224.009 kb on - strand, within BACOVA_01992at 224.035 kb on - strand, within BACOVA_01992at 224.042 kb on - strand, within BACOVA_01992at 224.100 kb on + strand, within BACOVA_01992at 224.113 kb on - strand, within BACOVA_01992at 224.115 kb on + strand, within BACOVA_01992at 224.115 kb on + strand, within BACOVA_01992at 224.166 kb on - strand, within BACOVA_01992at 224.167 kb on + strand, within BACOVA_01992at 224.167 kb on + strand, within BACOVA_01992at 224.168 kb on - strand, within BACOVA_01992at 224.178 kb on + strand, within BACOVA_01992at 224.184 kb on + strand, within BACOVA_01992at 224.185 kb on - strand, within BACOVA_01992at 224.217 kb on - strand, within BACOVA_01992at 224.241 kb on + strand, within BACOVA_01992at 224.241 kb on + strand, within BACOVA_01992at 224.304 kb on + strand, within BACOVA_01992at 224.305 kb on - strand, within BACOVA_01992at 224.305 kb on - strand, within BACOVA_01992at 224.308 kb on + strand, within BACOVA_01992at 224.316 kb on - strand, within BACOVA_01992at 224.396 kb on - strand, within BACOVA_01992at 224.399 kb on + strand, within BACOVA_01992at 224.400 kb on - strand, within BACOVA_01992at 224.400 kb on - strand, within BACOVA_01992at 224.426 kb on - strand, within BACOVA_01992at 224.447 kb on + strand, within BACOVA_01992at 224.447 kb on + strand, within BACOVA_01992at 224.468 kb on + strand, within BACOVA_01992at 224.469 kb on - strand, within BACOVA_01992at 224.498 kb on + strand, within BACOVA_01992at 224.499 kb on - strand, within BACOVA_01992at 224.505 kb on + strand, within BACOVA_01992at 224.506 kb on - strand, within BACOVA_01992at 224.514 kb on + strand, within BACOVA_01992at 224.514 kb on + strand, within BACOVA_01992at 224.560 kb on + strand, within BACOVA_01992at 224.560 kb on + strand, within BACOVA_01992at 224.561 kb on - strand, within BACOVA_01992at 224.622 kb on - strandat 224.634 kb on - strandat 224.659 kb on - strandat 224.676 kb on - strandat 224.676 kb on - strandat 224.766 kb on - strandat 224.784 kb on + strandat 224.785 kb on - strandat 224.953 kb on - strandat 224.987 kb on - strandat 224.988 kb on + strandat 224.988 kb on + strandat 224.989 kb on - strandat 224.989 kb on - strandat 224.990 kb on + strandat 225.031 kb on - strandat 225.032 kb on + strandat 225.032 kb on + strandat 225.033 kb on - strandat 225.057 kb on - strandat 225.075 kb on + strandat 225.102 kb on - strand, within BACOVA_01993at 225.223 kb on + strand, within BACOVA_01993at 225.223 kb on + strand, within BACOVA_01993at 225.223 kb on + strand, within BACOVA_01993at 225.224 kb on - strand, within BACOVA_01993at 225.226 kb on + strand, within BACOVA_01993at 225.269 kb on - strand, within BACOVA_01993at 225.273 kb on + strand, within BACOVA_01993at 225.273 kb on + strand, within BACOVA_01993at 225.273 kb on + strand, within BACOVA_01993at 225.273 kb on + strand, within BACOVA_01993at 225.305 kb on + strand, within BACOVA_01993at 225.305 kb on + strand, within BACOVA_01993at 225.306 kb on - strand, within BACOVA_01993at 225.308 kb on + strand, within BACOVA_01993at 225.309 kb on - strand, within BACOVA_01993at 225.326 kb on + strand, within BACOVA_01993at 225.330 kb on - strand, within BACOVA_01993at 225.339 kb on - strand, within BACOVA_01993at 225.377 kb on + strand, within BACOVA_01993at 225.378 kb on - strand, within BACOVA_01993at 225.378 kb on - strand, within BACOVA_01993at 225.397 kb on + strand, within BACOVA_01993at 225.398 kb on - strand, within BACOVA_01993at 225.471 kb on - strand, within BACOVA_01993at 225.492 kb on + strand, within BACOVA_01993at 225.502 kb on + strand, within BACOVA_01993at 225.561 kb on - strand, within BACOVA_01993at 225.596 kb on + strand, within BACOVA_01993at 225.600 kb on + strand, within BACOVA_01993at 225.600 kb on + strand, within BACOVA_01993at 225.632 kb on + strand, within BACOVA_01993at 225.632 kb on + strand, within BACOVA_01993at 225.770 kb on - strand, within BACOVA_01993at 225.793 kb on + strand, within BACOVA_01993at 225.794 kb on - strand, within BACOVA_01993at 225.794 kb on - strand, within BACOVA_01993at 225.797 kb on + strand, within BACOVA_01993at 225.797 kb on + strand, within BACOVA_01993at 225.798 kb on - strand, within BACOVA_01993at 225.798 kb on - strand, within BACOVA_01993at 225.805 kb on + strand, within BACOVA_01993at 225.806 kb on - strand, within BACOVA_01993at 225.808 kb on + strand, within BACOVA_01993at 225.827 kb on - strand, within BACOVA_01993at 225.858 kb on + strand, within BACOVA_01993at 225.861 kb on + strand, within BACOVA_01993at 225.861 kb on + strand, within BACOVA_01993at 225.862 kb on - strand, within BACOVA_01993at 225.864 kb on - strand, within BACOVA_01993at 225.902 kb on + strand, within BACOVA_01993at 225.908 kb on + strand, within BACOVA_01993at 225.954 kb on - strand, within BACOVA_01993at 225.975 kb on - strand, within BACOVA_01993at 226.029 kb on - strand, within BACOVA_01993at 226.120 kb on + strand, within BACOVA_01993at 226.172 kb on - strand, within BACOVA_01993at 226.264 kb on - strandat 226.318 kb on + strandat 226.371 kb on + strandat 226.371 kb on + strandat 226.371 kb on + strandat 226.372 kb on - strandat 226.373 kb on + strandat 226.373 kb on + strandat 226.376 kb on + strandat 226.376 kb on + strandat 226.377 kb on - strandat 226.377 kb on - strandat 226.380 kb on - strandat 226.380 kb on - strandat 226.398 kb on + strandat 226.403 kb on - strandat 226.469 kb on - strand, within BACOVA_01994at 226.500 kb on + strand, within BACOVA_01994at 226.501 kb on - strand, within BACOVA_01994at 226.506 kb on - strand, within BACOVA_01994at 226.523 kb on + strand, within BACOVA_01994at 226.546 kb on + strand, within BACOVA_01994at 226.546 kb on + strand, within BACOVA_01994at 226.592 kb on + strand, within BACOVA_01994at 226.592 kb on + strand, within BACOVA_01994at 226.593 kb on - strand, within BACOVA_01994at 226.593 kb on - strand, within BACOVA_01994at 226.626 kb on - strand, within BACOVA_01994at 226.626 kb on - strand, within BACOVA_01994at 226.649 kb on - strand, within BACOVA_01994at 226.649 kb on - strand, within BACOVA_01994at 226.649 kb on - strand, within BACOVA_01994at 226.649 kb on - strand, within BACOVA_01994at 226.651 kb on + strand, within BACOVA_01994at 226.652 kb on - strand, within BACOVA_01994at 226.664 kb on + strand, within BACOVA_01994at 226.682 kb on + strand, within BACOVA_01994at 226.704 kb on + strand, within BACOVA_01994at 226.720 kb on + strand, within BACOVA_01994at 226.738 kb on + strand, within BACOVA_01994at 226.738 kb on + strand, within BACOVA_01994at 226.739 kb on - strand, within BACOVA_01994at 226.751 kb on + strand, within BACOVA_01994at 226.778 kb on + strand, within BACOVA_01994at 226.816 kb on + strand, within BACOVA_01994at 226.834 kb on + strand, within BACOVA_01994at 226.835 kb on - strand, within BACOVA_01994at 226.842 kb on + strand, within BACOVA_01994at 226.843 kb on - strand, within BACOVA_01994at 226.870 kb on + strand, within BACOVA_01994at 226.871 kb on - strand, within BACOVA_01994at 226.886 kb on + strand, within BACOVA_01994at 226.892 kb on + strand, within BACOVA_01994at 226.892 kb on + strand, within BACOVA_01994at 226.893 kb on - strand, within BACOVA_01994at 226.893 kb on - strand, within BACOVA_01994at 226.893 kb on - strand, within BACOVA_01994at 226.893 kb on - strand, within BACOVA_01994at 226.893 kb on - strand, within BACOVA_01994at 226.893 kb on - strand, within BACOVA_01994at 226.893 kb on - strand, within BACOVA_01994at 226.900 kb on + strand, within BACOVA_01994at 226.908 kb on + strand, within BACOVA_01994at 226.908 kb on + strand, within BACOVA_01994at 226.909 kb on - strand, within BACOVA_01994at 226.913 kb on + strand, within BACOVA_01994at 226.938 kb on + strand, within BACOVA_01994at 226.939 kb on - strand, within BACOVA_01994at 226.939 kb on - strand, within BACOVA_01994at 226.939 kb on - strand, within BACOVA_01994at 226.939 kb on - strand, within BACOVA_01994at 226.939 kb on - strand, within BACOVA_01994at 226.961 kb on + strand, within BACOVA_01994at 226.979 kb on + strand, within BACOVA_01994at 226.979 kb on + strand, within BACOVA_01994at 226.980 kb on - strand, within BACOVA_01994at 227.016 kb on + strand, within BACOVA_01994at 227.036 kb on + strand, within BACOVA_01994at 227.037 kb on - strand, within BACOVA_01994at 227.084 kb on + strandat 227.085 kb on - strandat 227.156 kb on - strandat 227.157 kb on + strandat 227.158 kb on - strandat 227.212 kb on - strandat 227.213 kb on + strandat 227.213 kb on + strandat 227.229 kb on + strandat 227.278 kb on - strandat 227.278 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction amylopectin from maize 2.5 mg/ml (C)
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223,983 + BACOVA_01992 0.72 -1.0
223,993 + BACOVA_01992 0.72 +1.6
224,008 + BACOVA_01992 0.72 -0.1
224,009 - BACOVA_01992 0.72 +1.2
224,035 - BACOVA_01992 0.73 -0.7
224,042 - BACOVA_01992 0.73 -0.4
224,100 + BACOVA_01992 0.75 -1.2
224,113 - BACOVA_01992 0.75 +0.4
224,115 + BACOVA_01992 0.75 +1.9
224,115 + BACOVA_01992 0.75 +1.2
224,166 - BACOVA_01992 0.77 -0.1
224,167 + BACOVA_01992 0.77 +0.9
224,167 + BACOVA_01992 0.77 -0.1
224,168 - BACOVA_01992 0.77 +1.9
224,178 + BACOVA_01992 0.77 -0.9
224,184 + BACOVA_01992 0.77 -1.7
224,185 - BACOVA_01992 0.77 -1.8
224,217 - BACOVA_01992 0.78 +4.2
224,241 + BACOVA_01992 0.79 +1.4
224,241 + BACOVA_01992 0.79 +1.2
224,304 + BACOVA_01992 0.81 -1.6
224,305 - BACOVA_01992 0.81 +0.9
224,305 - BACOVA_01992 0.81 +0.9
224,308 + BACOVA_01992 0.81 -0.7
224,316 - BACOVA_01992 0.81 -1.6
224,396 - BACOVA_01992 0.84 -0.4
224,399 + BACOVA_01992 0.84 +0.9
224,400 - BACOVA_01992 0.84 +0.9
224,400 - BACOVA_01992 0.84 +0.9
224,426 - BACOVA_01992 0.84 -1.3
224,447 + BACOVA_01992 0.85 -1.3
224,447 + BACOVA_01992 0.85 +0.0
224,468 + BACOVA_01992 0.86 +1.9
224,469 - BACOVA_01992 0.86 +0.1
224,498 + BACOVA_01992 0.87 +0.4
224,499 - BACOVA_01992 0.87 -0.8
224,505 + BACOVA_01992 0.87 +0.9
224,506 - BACOVA_01992 0.87 +0.9
224,514 + BACOVA_01992 0.87 -0.4
224,514 + BACOVA_01992 0.87 +0.9
224,560 + BACOVA_01992 0.88 -1.5
224,560 + BACOVA_01992 0.88 -0.4
224,561 - BACOVA_01992 0.88 +1.5
224,622 - -0.1
224,634 - +0.4
224,659 - +0.1
224,676 - +0.4
224,676 - -0.3
224,766 - -2.0
224,784 + +1.9
224,785 - -0.9
224,953 - +1.9
224,987 - -1.6
224,988 + -0.4
224,988 + +1.9
224,989 - +0.4
224,989 - +0.4
224,990 + +0.4
225,031 - +0.1
225,032 + -0.1
225,032 + +0.4
225,033 - +1.1
225,057 - -0.3
225,075 + +0.9
225,102 - BACOVA_01993 0.10 +0.2
225,223 + BACOVA_01993 0.19 -1.4
225,223 + BACOVA_01993 0.19 +0.6
225,223 + BACOVA_01993 0.19 +1.4
225,224 - BACOVA_01993 0.19 +4.2
225,226 + BACOVA_01993 0.19 -2.0
225,269 - BACOVA_01993 0.22 -2.0
225,273 + BACOVA_01993 0.22 +0.7
225,273 + BACOVA_01993 0.22 -1.3
225,273 + BACOVA_01993 0.22 -0.6
225,273 + BACOVA_01993 0.22 -1.1
225,305 + BACOVA_01993 0.25 +2.2
225,305 + BACOVA_01993 0.25 +2.4
225,306 - BACOVA_01993 0.25 -0.9
225,308 + BACOVA_01993 0.25 +3.4
225,309 - BACOVA_01993 0.25 +0.2
225,326 + BACOVA_01993 0.26 +1.4
225,330 - BACOVA_01993 0.26 -0.8
225,339 - BACOVA_01993 0.27 +2.1
225,377 + BACOVA_01993 0.30 -2.0
225,378 - BACOVA_01993 0.30 +0.3
225,378 - BACOVA_01993 0.30 -0.4
225,397 + BACOVA_01993 0.31 -0.4
225,398 - BACOVA_01993 0.31 +1.1
225,471 - BACOVA_01993 0.37 +1.2
225,492 + BACOVA_01993 0.38 -0.4
225,502 + BACOVA_01993 0.39 +0.4
225,561 - BACOVA_01993 0.43 +1.1
225,596 + BACOVA_01993 0.45 +1.4
225,600 + BACOVA_01993 0.46 +0.4
225,600 + BACOVA_01993 0.46 +1.1
225,632 + BACOVA_01993 0.48 -0.1
225,632 + BACOVA_01993 0.48 -0.4
225,770 - BACOVA_01993 0.58 +0.1
225,793 + BACOVA_01993 0.59 -1.3
225,794 - BACOVA_01993 0.60 -0.3
225,794 - BACOVA_01993 0.60 +0.6
225,797 + BACOVA_01993 0.60 -0.4
225,797 + BACOVA_01993 0.60 -0.6
225,798 - BACOVA_01993 0.60 -0.6
225,798 - BACOVA_01993 0.60 -0.1
225,805 + BACOVA_01993 0.60 +0.9
225,806 - BACOVA_01993 0.60 -1.3
225,808 + BACOVA_01993 0.61 +1.7
225,827 - BACOVA_01993 0.62 -1.4
225,858 + BACOVA_01993 0.64 +0.9
225,861 + BACOVA_01993 0.64 +0.4
225,861 + BACOVA_01993 0.64 +2.4
225,862 - BACOVA_01993 0.64 +3.0
225,864 - BACOVA_01993 0.65 +1.8
225,902 + BACOVA_01993 0.67 -1.3
225,908 + BACOVA_01993 0.68 +0.4
225,954 - BACOVA_01993 0.71 +1.7
225,975 - BACOVA_01993 0.72 -1.1
226,029 - BACOVA_01993 0.76 +0.1
226,120 + BACOVA_01993 0.83 +0.6
226,172 - BACOVA_01993 0.86 -0.0
226,264 - +3.8
226,318 + -0.2
226,371 + +0.6
226,371 + -2.0
226,371 + -0.6
226,372 - +0.9
226,373 + +0.2
226,373 + -2.0
226,376 + +0.4
226,376 + -1.4
226,377 - +1.7
226,377 - -0.0
226,380 - +0.1
226,380 - +0.4
226,398 + -1.5
226,403 - +2.4
226,469 - BACOVA_01994 0.12 -0.6
226,500 + BACOVA_01994 0.16 -0.0
226,501 - BACOVA_01994 0.16 +0.6
226,506 - BACOVA_01994 0.16 +0.3
226,523 + BACOVA_01994 0.19 -1.3
226,546 + BACOVA_01994 0.22 -1.6
226,546 + BACOVA_01994 0.22 -0.2
226,592 + BACOVA_01994 0.27 +0.3
226,592 + BACOVA_01994 0.27 -0.5
226,593 - BACOVA_01994 0.28 +1.5
226,593 - BACOVA_01994 0.28 -0.4
226,626 - BACOVA_01994 0.32 -0.6
226,626 - BACOVA_01994 0.32 +0.1
226,649 - BACOVA_01994 0.35 +1.8
226,649 - BACOVA_01994 0.35 -1.3
226,649 - BACOVA_01994 0.35 -0.4
226,649 - BACOVA_01994 0.35 -2.7
226,651 + BACOVA_01994 0.35 +0.1
226,652 - BACOVA_01994 0.35 -3.3
226,664 + BACOVA_01994 0.37 -0.8
226,682 + BACOVA_01994 0.39 +1.4
226,704 + BACOVA_01994 0.42 +0.2
226,720 + BACOVA_01994 0.44 -0.4
226,738 + BACOVA_01994 0.46 +1.4
226,738 + BACOVA_01994 0.46 -1.2
226,739 - BACOVA_01994 0.47 -0.0
226,751 + BACOVA_01994 0.48 -2.8
226,778 + BACOVA_01994 0.52 +0.4
226,816 + BACOVA_01994 0.57 -1.4
226,834 + BACOVA_01994 0.59 -2.2
226,835 - BACOVA_01994 0.59 -0.1
226,842 + BACOVA_01994 0.60 -3.1
226,843 - BACOVA_01994 0.60 -2.5
226,870 + BACOVA_01994 0.64 -0.7
226,871 - BACOVA_01994 0.64 -1.6
226,886 + BACOVA_01994 0.66 +0.5
226,892 + BACOVA_01994 0.66 -1.0
226,892 + BACOVA_01994 0.66 -1.6
226,893 - BACOVA_01994 0.67 +0.8
226,893 - BACOVA_01994 0.67 +0.4
226,893 - BACOVA_01994 0.67 +0.1
226,893 - BACOVA_01994 0.67 -0.0
226,893 - BACOVA_01994 0.67 +1.4
226,893 - BACOVA_01994 0.67 -1.7
226,893 - BACOVA_01994 0.67 -0.4
226,900 + BACOVA_01994 0.67 -1.2
226,908 + BACOVA_01994 0.68 +0.3
226,908 + BACOVA_01994 0.68 -0.3
226,909 - BACOVA_01994 0.69 +0.4
226,913 + BACOVA_01994 0.69 +0.7
226,938 + BACOVA_01994 0.72 +1.0
226,939 - BACOVA_01994 0.73 -0.4
226,939 - BACOVA_01994 0.73 +1.4
226,939 - BACOVA_01994 0.73 +0.4
226,939 - BACOVA_01994 0.73 -0.4
226,939 - BACOVA_01994 0.73 +1.1
226,961 + BACOVA_01994 0.75 -0.1
226,979 + BACOVA_01994 0.78 +1.7
226,979 + BACOVA_01994 0.78 -0.4
226,980 - BACOVA_01994 0.78 -1.8
227,016 + BACOVA_01994 0.82 -1.4
227,036 + BACOVA_01994 0.85 -1.4
227,037 - BACOVA_01994 0.85 +0.1
227,084 + -2.6
227,085 - -1.7
227,156 - +0.3
227,157 + -0.4
227,158 - -0.9
227,212 - +0.3
227,213 + -0.4
227,213 + +1.1
227,229 + -1.6
227,278 - -1.5
227,278 - -2.6

Or see this region's nucleotide sequence