Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_01919

Experiment: amylopectin from maize 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_01918 and BACOVA_01919 overlap by 14 nucleotidesBACOVA_01919 and BACOVA_01920 are separated by 46 nucleotidesBACOVA_01920 and BACOVA_01921 overlap by 17 nucleotides BACOVA_01918: BACOVA_01918 - putative dolichyl-phosphate-mannose-protein mannosyltransferase, at 127,063 to 128,901 _01918 BACOVA_01919: BACOVA_01919 - arylsulfatase, at 128,888 to 130,867 _01919 BACOVA_01920: BACOVA_01920 - GtrA-like protein, at 130,914 to 131,333 _01920 BACOVA_01921: BACOVA_01921 - glycosyltransferase, group 2 family protein, at 131,317 to 132,273 _01921 Position (kb) 128 129 130 131Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 127.888 kb on + strand, within BACOVA_01918at 127.889 kb on - strand, within BACOVA_01918at 127.931 kb on + strand, within BACOVA_01918at 127.931 kb on + strand, within BACOVA_01918at 127.932 kb on - strand, within BACOVA_01918at 127.962 kb on - strand, within BACOVA_01918at 128.069 kb on + strand, within BACOVA_01918at 128.070 kb on - strand, within BACOVA_01918at 128.108 kb on - strand, within BACOVA_01918at 128.108 kb on - strand, within BACOVA_01918at 128.113 kb on - strand, within BACOVA_01918at 128.135 kb on + strand, within BACOVA_01918at 128.135 kb on + strand, within BACOVA_01918at 128.135 kb on + strand, within BACOVA_01918at 128.135 kb on + strand, within BACOVA_01918at 128.136 kb on - strand, within BACOVA_01918at 128.136 kb on - strand, within BACOVA_01918at 128.168 kb on - strand, within BACOVA_01918at 128.186 kb on + strand, within BACOVA_01918at 128.191 kb on + strand, within BACOVA_01918at 128.212 kb on - strand, within BACOVA_01918at 128.212 kb on - strand, within BACOVA_01918at 128.229 kb on - strand, within BACOVA_01918at 128.235 kb on + strand, within BACOVA_01918at 128.259 kb on - strand, within BACOVA_01918at 128.259 kb on - strand, within BACOVA_01918at 128.338 kb on - strand, within BACOVA_01918at 128.340 kb on + strand, within BACOVA_01918at 128.357 kb on + strand, within BACOVA_01918at 128.385 kb on - strand, within BACOVA_01918at 128.385 kb on - strand, within BACOVA_01918at 128.403 kb on + strand, within BACOVA_01918at 128.419 kb on + strand, within BACOVA_01918at 128.419 kb on + strand, within BACOVA_01918at 128.465 kb on + strand, within BACOVA_01918at 128.467 kb on + strand, within BACOVA_01918at 128.484 kb on + strand, within BACOVA_01918at 128.484 kb on + strand, within BACOVA_01918at 128.485 kb on - strand, within BACOVA_01918at 128.497 kb on + strand, within BACOVA_01918at 128.497 kb on + strand, within BACOVA_01918at 128.497 kb on + strand, within BACOVA_01918at 128.498 kb on - strand, within BACOVA_01918at 128.498 kb on - strand, within BACOVA_01918at 128.518 kb on + strand, within BACOVA_01918at 128.698 kb on + strand, within BACOVA_01918at 128.699 kb on - strand, within BACOVA_01918at 128.730 kb on - strandat 128.755 kb on + strandat 128.755 kb on + strandat 128.756 kb on - strandat 128.783 kb on - strandat 128.799 kb on - strandat 128.800 kb on + strandat 128.800 kb on + strandat 128.801 kb on - strandat 128.819 kb on + strandat 128.890 kb on - strandat 128.890 kb on - strandat 128.899 kb on + strandat 128.899 kb on + strandat 128.969 kb on - strandat 129.036 kb on + strandat 129.037 kb on - strandat 129.041 kb on - strandat 129.065 kb on - strandat 129.072 kb on + strandat 129.072 kb on + strandat 129.115 kb on + strand, within BACOVA_01919at 129.117 kb on + strand, within BACOVA_01919at 129.117 kb on + strand, within BACOVA_01919at 129.117 kb on + strand, within BACOVA_01919at 129.117 kb on + strand, within BACOVA_01919at 129.118 kb on - strand, within BACOVA_01919at 129.118 kb on - strand, within BACOVA_01919at 129.118 kb on - strand, within BACOVA_01919at 129.124 kb on + strand, within BACOVA_01919at 129.124 kb on + strand, within BACOVA_01919at 129.164 kb on - strand, within BACOVA_01919at 129.174 kb on + strand, within BACOVA_01919at 129.197 kb on + strand, within BACOVA_01919at 129.198 kb on - strand, within BACOVA_01919at 129.209 kb on + strand, within BACOVA_01919at 129.209 kb on + strand, within BACOVA_01919at 129.210 kb on - strand, within BACOVA_01919at 129.212 kb on - strand, within BACOVA_01919at 129.215 kb on + strand, within BACOVA_01919at 129.215 kb on + strand, within BACOVA_01919at 129.216 kb on - strand, within BACOVA_01919at 129.286 kb on + strand, within BACOVA_01919at 129.287 kb on - strand, within BACOVA_01919at 129.288 kb on + strand, within BACOVA_01919at 129.299 kb on + strand, within BACOVA_01919at 129.358 kb on + strand, within BACOVA_01919at 129.359 kb on - strand, within BACOVA_01919at 129.359 kb on - strand, within BACOVA_01919at 129.359 kb on - strand, within BACOVA_01919at 129.361 kb on + strand, within BACOVA_01919at 129.362 kb on - strand, within BACOVA_01919at 129.421 kb on - strand, within BACOVA_01919at 129.511 kb on + strand, within BACOVA_01919at 129.512 kb on - strand, within BACOVA_01919at 129.564 kb on + strand, within BACOVA_01919at 129.564 kb on + strand, within BACOVA_01919at 129.565 kb on - strand, within BACOVA_01919at 129.565 kb on - strand, within BACOVA_01919at 129.571 kb on - strand, within BACOVA_01919at 129.571 kb on - strand, within BACOVA_01919at 129.599 kb on - strand, within BACOVA_01919at 129.599 kb on - strand, within BACOVA_01919at 129.599 kb on - strand, within BACOVA_01919at 129.610 kb on + strand, within BACOVA_01919at 129.677 kb on - strand, within BACOVA_01919at 129.677 kb on - strand, within BACOVA_01919at 129.680 kb on - strand, within BACOVA_01919at 129.685 kb on - strand, within BACOVA_01919at 129.718 kb on - strand, within BACOVA_01919at 129.878 kb on - strand, within BACOVA_01919at 129.888 kb on + strand, within BACOVA_01919at 129.888 kb on + strand, within BACOVA_01919at 129.889 kb on - strand, within BACOVA_01919at 129.889 kb on - strand, within BACOVA_01919at 129.940 kb on + strand, within BACOVA_01919at 129.956 kb on + strand, within BACOVA_01919at 129.968 kb on - strand, within BACOVA_01919at 129.968 kb on - strand, within BACOVA_01919at 129.982 kb on + strand, within BACOVA_01919at 130.025 kb on - strand, within BACOVA_01919at 130.025 kb on - strand, within BACOVA_01919at 130.120 kb on - strand, within BACOVA_01919at 130.120 kb on - strand, within BACOVA_01919at 130.123 kb on + strand, within BACOVA_01919at 130.138 kb on + strand, within BACOVA_01919at 130.138 kb on + strand, within BACOVA_01919at 130.139 kb on - strand, within BACOVA_01919at 130.178 kb on + strand, within BACOVA_01919at 130.215 kb on + strand, within BACOVA_01919at 130.227 kb on - strand, within BACOVA_01919at 130.240 kb on + strand, within BACOVA_01919at 130.249 kb on + strand, within BACOVA_01919at 130.351 kb on + strand, within BACOVA_01919at 130.351 kb on + strand, within BACOVA_01919at 130.352 kb on - strand, within BACOVA_01919at 130.352 kb on - strand, within BACOVA_01919at 130.377 kb on + strand, within BACOVA_01919at 130.378 kb on - strand, within BACOVA_01919at 130.378 kb on - strand, within BACOVA_01919at 130.381 kb on + strand, within BACOVA_01919at 130.382 kb on - strand, within BACOVA_01919at 130.391 kb on + strand, within BACOVA_01919at 130.392 kb on - strand, within BACOVA_01919at 130.435 kb on - strand, within BACOVA_01919at 130.468 kb on + strand, within BACOVA_01919at 130.510 kb on + strand, within BACOVA_01919at 130.510 kb on + strand, within BACOVA_01919at 130.511 kb on - strand, within BACOVA_01919at 130.524 kb on + strand, within BACOVA_01919at 130.525 kb on - strand, within BACOVA_01919at 130.557 kb on - strand, within BACOVA_01919at 130.557 kb on - strand, within BACOVA_01919at 130.572 kb on + strand, within BACOVA_01919at 130.641 kb on - strand, within BACOVA_01919at 130.670 kb on + strandat 130.671 kb on - strandat 130.674 kb on + strandat 130.674 kb on + strandat 130.674 kb on + strandat 130.675 kb on - strandat 130.675 kb on - strandat 130.683 kb on - strandat 130.778 kb on - strandat 130.826 kb on + strandat 130.826 kb on + strandat 130.827 kb on - strandat 130.827 kb on - strandat 130.835 kb on + strandat 130.835 kb on + strandat 130.836 kb on - strandat 130.837 kb on + strandat 130.837 kb on + strandat 130.837 kb on + strandat 130.838 kb on - strandat 130.839 kb on + strandat 130.839 kb on + strandat 130.839 kb on + strandat 130.840 kb on - strandat 130.841 kb on + strandat 130.884 kb on + strandat 130.892 kb on - strandat 130.909 kb on + strandat 130.915 kb on + strandat 130.928 kb on + strandat 130.929 kb on - strandat 130.930 kb on + strandat 130.930 kb on + strandat 130.930 kb on + strandat 130.931 kb on - strandat 130.935 kb on - strandat 130.936 kb on + strandat 130.936 kb on + strandat 130.964 kb on + strand, within BACOVA_01920at 130.984 kb on - strand, within BACOVA_01920at 131.141 kb on - strand, within BACOVA_01920at 131.216 kb on - strand, within BACOVA_01920at 131.217 kb on + strand, within BACOVA_01920at 131.217 kb on + strand, within BACOVA_01920at 131.218 kb on - strand, within BACOVA_01920at 131.243 kb on + strand, within BACOVA_01920at 131.243 kb on + strand, within BACOVA_01920at 131.282 kb on + strand, within BACOVA_01920at 131.283 kb on - strand, within BACOVA_01920at 131.318 kb on + strandat 131.318 kb on + strandat 131.318 kb on + strandat 131.318 kb on + strandat 131.318 kb on + strandat 131.319 kb on - strandat 131.319 kb on - strandat 131.322 kb on + strandat 131.336 kb on + strandat 131.356 kb on - strandat 131.374 kb on + strandat 131.375 kb on - strandat 131.384 kb on + strandat 131.397 kb on + strandat 131.397 kb on + strandat 131.399 kb on + strandat 131.400 kb on - strandat 131.426 kb on - strand, within BACOVA_01921at 131.504 kb on + strand, within BACOVA_01921at 131.513 kb on + strand, within BACOVA_01921at 131.514 kb on - strand, within BACOVA_01921at 131.547 kb on + strand, within BACOVA_01921at 131.634 kb on + strand, within BACOVA_01921at 131.637 kb on - strand, within BACOVA_01921at 131.677 kb on + strand, within BACOVA_01921at 131.678 kb on - strand, within BACOVA_01921at 131.682 kb on + strand, within BACOVA_01921at 131.683 kb on - strand, within BACOVA_01921at 131.709 kb on + strand, within BACOVA_01921at 131.712 kb on + strand, within BACOVA_01921at 131.712 kb on + strand, within BACOVA_01921at 131.713 kb on - strand, within BACOVA_01921at 131.798 kb on + strand, within BACOVA_01921at 131.798 kb on + strand, within BACOVA_01921at 131.798 kb on + strand, within BACOVA_01921at 131.799 kb on - strand, within BACOVA_01921at 131.827 kb on + strand, within BACOVA_01921at 131.827 kb on + strand, within BACOVA_01921at 131.828 kb on - strand, within BACOVA_01921at 131.832 kb on + strand, within BACOVA_01921

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Per-strain Table

Position Strand Gene LocusTag Fraction amylopectin from maize 2.5 mg/ml (C)
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127,888 + BACOVA_01918 0.45 -2.3
127,889 - BACOVA_01918 0.45 -2.5
127,931 + BACOVA_01918 0.47 -1.1
127,931 + BACOVA_01918 0.47 -3.1
127,932 - BACOVA_01918 0.47 -0.1
127,962 - BACOVA_01918 0.49 -1.9
128,069 + BACOVA_01918 0.55 +0.4
128,070 - BACOVA_01918 0.55 -1.8
128,108 - BACOVA_01918 0.57 -0.5
128,108 - BACOVA_01918 0.57 -0.6
128,113 - BACOVA_01918 0.57 -1.3
128,135 + BACOVA_01918 0.58 +2.4
128,135 + BACOVA_01918 0.58 -3.9
128,135 + BACOVA_01918 0.58 -2.5
128,135 + BACOVA_01918 0.58 -1.8
128,136 - BACOVA_01918 0.58 -1.1
128,136 - BACOVA_01918 0.58 -2.5
128,168 - BACOVA_01918 0.60 -1.7
128,186 + BACOVA_01918 0.61 -1.9
128,191 + BACOVA_01918 0.61 +1.4
128,212 - BACOVA_01918 0.62 -0.4
128,212 - BACOVA_01918 0.62 -2.5
128,229 - BACOVA_01918 0.63 +0.4
128,235 + BACOVA_01918 0.64 -1.4
128,259 - BACOVA_01918 0.65 -0.4
128,259 - BACOVA_01918 0.65 -1.4
128,338 - BACOVA_01918 0.69 -3.6
128,340 + BACOVA_01918 0.69 +0.9
128,357 + BACOVA_01918 0.70 -2.1
128,385 - BACOVA_01918 0.72 -1.0
128,385 - BACOVA_01918 0.72 -0.3
128,403 + BACOVA_01918 0.73 -2.4
128,419 + BACOVA_01918 0.74 -1.6
128,419 + BACOVA_01918 0.74 -3.0
128,465 + BACOVA_01918 0.76 +0.1
128,467 + BACOVA_01918 0.76 +0.6
128,484 + BACOVA_01918 0.77 -0.9
128,484 + BACOVA_01918 0.77 +1.4
128,485 - BACOVA_01918 0.77 -2.3
128,497 + BACOVA_01918 0.78 -0.6
128,497 + BACOVA_01918 0.78 -2.7
128,497 + BACOVA_01918 0.78 -3.1
128,498 - BACOVA_01918 0.78 -1.0
128,498 - BACOVA_01918 0.78 +0.1
128,518 + BACOVA_01918 0.79 -1.7
128,698 + BACOVA_01918 0.89 -1.1
128,699 - BACOVA_01918 0.89 -3.4
128,730 - +2.4
128,755 + -1.5
128,755 + +0.4
128,756 - -3.5
128,783 - -0.4
128,799 - -2.5
128,800 + -2.4
128,800 + -1.6
128,801 - +1.7
128,819 + -1.9
128,890 - +0.2
128,890 - -0.2
128,899 + +1.6
128,899 + +2.6
128,969 - -2.8
129,036 + -2.9
129,037 - -2.0
129,041 - +2.3
129,065 - -0.6
129,072 + -2.8
129,072 + -2.5
129,115 + BACOVA_01919 0.11 -1.5
129,117 + BACOVA_01919 0.12 -1.9
129,117 + BACOVA_01919 0.12 +0.4
129,117 + BACOVA_01919 0.12 -4.1
129,117 + BACOVA_01919 0.12 -2.6
129,118 - BACOVA_01919 0.12 -3.4
129,118 - BACOVA_01919 0.12 -1.7
129,118 - BACOVA_01919 0.12 -0.1
129,124 + BACOVA_01919 0.12 -2.0
129,124 + BACOVA_01919 0.12 -2.3
129,164 - BACOVA_01919 0.14 -2.8
129,174 + BACOVA_01919 0.14 -2.3
129,197 + BACOVA_01919 0.16 -1.0
129,198 - BACOVA_01919 0.16 -2.2
129,209 + BACOVA_01919 0.16 -0.5
129,209 + BACOVA_01919 0.16 +1.4
129,210 - BACOVA_01919 0.16 -1.6
129,212 - BACOVA_01919 0.16 -1.7
129,215 + BACOVA_01919 0.17 +0.4
129,215 + BACOVA_01919 0.17 +0.1
129,216 - BACOVA_01919 0.17 -0.7
129,286 + BACOVA_01919 0.20 -1.0
129,287 - BACOVA_01919 0.20 -1.3
129,288 + BACOVA_01919 0.20 -2.8
129,299 + BACOVA_01919 0.21 +1.7
129,358 + BACOVA_01919 0.24 -0.9
129,359 - BACOVA_01919 0.24 -1.5
129,359 - BACOVA_01919 0.24 -1.1
129,359 - BACOVA_01919 0.24 +0.4
129,361 + BACOVA_01919 0.24 -0.4
129,362 - BACOVA_01919 0.24 -4.0
129,421 - BACOVA_01919 0.27 -1.5
129,511 + BACOVA_01919 0.31 -1.6
129,512 - BACOVA_01919 0.32 +2.4
129,564 + BACOVA_01919 0.34 -0.6
129,564 + BACOVA_01919 0.34 +0.4
129,565 - BACOVA_01919 0.34 -0.4
129,565 - BACOVA_01919 0.34 +0.1
129,571 - BACOVA_01919 0.34 -3.5
129,571 - BACOVA_01919 0.34 -0.9
129,599 - BACOVA_01919 0.36 -2.1
129,599 - BACOVA_01919 0.36 -1.2
129,599 - BACOVA_01919 0.36 -0.4
129,610 + BACOVA_01919 0.36 -1.5
129,677 - BACOVA_01919 0.40 -2.8
129,677 - BACOVA_01919 0.40 -3.8
129,680 - BACOVA_01919 0.40 -0.8
129,685 - BACOVA_01919 0.40 +0.2
129,718 - BACOVA_01919 0.42 -0.6
129,878 - BACOVA_01919 0.50 -1.3
129,888 + BACOVA_01919 0.51 -2.2
129,888 + BACOVA_01919 0.51 -0.2
129,889 - BACOVA_01919 0.51 -0.1
129,889 - BACOVA_01919 0.51 -2.8
129,940 + BACOVA_01919 0.53 -2.1
129,956 + BACOVA_01919 0.54 -1.7
129,968 - BACOVA_01919 0.55 -3.4
129,968 - BACOVA_01919 0.55 -2.4
129,982 + BACOVA_01919 0.55 -1.5
130,025 - BACOVA_01919 0.57 -1.8
130,025 - BACOVA_01919 0.57 -3.0
130,120 - BACOVA_01919 0.62 -1.9
130,120 - BACOVA_01919 0.62 +0.0
130,123 + BACOVA_01919 0.62 -0.9
130,138 + BACOVA_01919 0.63 -1.9
130,138 + BACOVA_01919 0.63 -1.1
130,139 - BACOVA_01919 0.63 -2.5
130,178 + BACOVA_01919 0.65 -1.4
130,215 + BACOVA_01919 0.67 +1.0
130,227 - BACOVA_01919 0.68 -1.4
130,240 + BACOVA_01919 0.68 -1.4
130,249 + BACOVA_01919 0.69 -1.3
130,351 + BACOVA_01919 0.74 -2.9
130,351 + BACOVA_01919 0.74 -2.6
130,352 - BACOVA_01919 0.74 -0.3
130,352 - BACOVA_01919 0.74 -0.6
130,377 + BACOVA_01919 0.75 -0.4
130,378 - BACOVA_01919 0.75 -1.8
130,378 - BACOVA_01919 0.75 -0.9
130,381 + BACOVA_01919 0.75 -2.8
130,382 - BACOVA_01919 0.75 -1.8
130,391 + BACOVA_01919 0.76 -0.9
130,392 - BACOVA_01919 0.76 -0.6
130,435 - BACOVA_01919 0.78 -2.6
130,468 + BACOVA_01919 0.80 -3.9
130,510 + BACOVA_01919 0.82 -0.1
130,510 + BACOVA_01919 0.82 -3.0
130,511 - BACOVA_01919 0.82 -0.6
130,524 + BACOVA_01919 0.83 -0.1
130,525 - BACOVA_01919 0.83 -2.5
130,557 - BACOVA_01919 0.84 -3.3
130,557 - BACOVA_01919 0.84 -0.8
130,572 + BACOVA_01919 0.85 -1.9
130,641 - BACOVA_01919 0.89 -0.3
130,670 + +0.9
130,671 - -0.3
130,674 + -1.5
130,674 + -1.1
130,674 + -2.3
130,675 - +1.4
130,675 - -1.6
130,683 - -2.5
130,778 - -3.0
130,826 + -0.6
130,826 + -0.4
130,827 - -2.1
130,827 - -3.1
130,835 + -0.6
130,835 + -0.1
130,836 - -1.3
130,837 + +0.9
130,837 + -1.6
130,837 + +1.4
130,838 - -0.1
130,839 + -0.5
130,839 + -2.5
130,839 + -1.6
130,840 - +1.7
130,841 + -2.9
130,884 + -3.2
130,892 - -0.9
130,909 + -1.0
130,915 + +1.7
130,928 + +0.1
130,929 - -0.0
130,930 + +0.1
130,930 + -1.6
130,930 + -1.1
130,931 - -1.7
130,935 - -0.4
130,936 + -1.4
130,936 + -2.6
130,964 + BACOVA_01920 0.12 +0.1
130,984 - BACOVA_01920 0.17 -1.1
131,141 - BACOVA_01920 0.54 -3.7
131,216 - BACOVA_01920 0.72 -1.1
131,217 + BACOVA_01920 0.72 -3.9
131,217 + BACOVA_01920 0.72 -3.0
131,218 - BACOVA_01920 0.72 -2.3
131,243 + BACOVA_01920 0.78 -1.5
131,243 + BACOVA_01920 0.78 -3.1
131,282 + BACOVA_01920 0.88 -1.1
131,283 - BACOVA_01920 0.88 -1.1
131,318 + -3.7
131,318 + -1.1
131,318 + -2.5
131,318 + -1.1
131,318 + -3.5
131,319 - -2.3
131,319 - -1.0
131,322 + -0.6
131,336 + -2.0
131,356 - -2.6
131,374 + -2.2
131,375 - -1.0
131,384 + -3.6
131,397 + -1.1
131,397 + -1.3
131,399 + +0.9
131,400 - -2.4
131,426 - BACOVA_01921 0.11 +0.9
131,504 + BACOVA_01921 0.20 -4.0
131,513 + BACOVA_01921 0.20 -2.0
131,514 - BACOVA_01921 0.21 +0.4
131,547 + BACOVA_01921 0.24 -2.7
131,634 + BACOVA_01921 0.33 -2.5
131,637 - BACOVA_01921 0.33 -1.5
131,677 + BACOVA_01921 0.38 -1.3
131,678 - BACOVA_01921 0.38 -0.1
131,682 + BACOVA_01921 0.38 -1.7
131,683 - BACOVA_01921 0.38 -0.4
131,709 + BACOVA_01921 0.41 -2.7
131,712 + BACOVA_01921 0.41 -3.6
131,712 + BACOVA_01921 0.41 -0.7
131,713 - BACOVA_01921 0.41 +0.0
131,798 + BACOVA_01921 0.50 +1.8
131,798 + BACOVA_01921 0.50 -3.1
131,798 + BACOVA_01921 0.50 -3.8
131,799 - BACOVA_01921 0.50 -0.4
131,827 + BACOVA_01921 0.53 -2.2
131,827 + BACOVA_01921 0.53 -1.5
131,828 - BACOVA_01921 0.53 -3.0
131,832 + BACOVA_01921 0.54 +1.4

Or see this region's nucleotide sequence