Experiment: amylopectin from maize 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_01666 and BACOVA_01667 are separated by 20 nucleotides BACOVA_01667 and BACOVA_01668 are separated by 56 nucleotides
BACOVA_01666: BACOVA_01666 - SusD family protein, at 75,828 to 77,309
_01666
BACOVA_01667: BACOVA_01667 - TonB-linked outer membrane protein, SusC/RagA family, at 77,330 to 80,413
_01667
BACOVA_01668: BACOVA_01668 - hypothetical protein, at 80,470 to 81,672
_01668
Position (kb) 77
78
79
80
81 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 76.425 kb on + strand, within BACOVA_01666 at 76.497 kb on - strand, within BACOVA_01666 at 76.499 kb on - strand, within BACOVA_01666 at 76.504 kb on - strand, within BACOVA_01666 at 76.515 kb on - strand, within BACOVA_01666 at 76.517 kb on + strand, within BACOVA_01666 at 76.541 kb on + strand, within BACOVA_01666 at 76.558 kb on + strand, within BACOVA_01666 at 76.593 kb on + strand, within BACOVA_01666 at 76.643 kb on - strand, within BACOVA_01666 at 76.675 kb on - strand, within BACOVA_01666 at 76.705 kb on + strand, within BACOVA_01666 at 76.705 kb on + strand, within BACOVA_01666 at 76.705 kb on + strand, within BACOVA_01666 at 76.706 kb on - strand, within BACOVA_01666 at 76.852 kb on - strand, within BACOVA_01666 at 76.967 kb on + strand, within BACOVA_01666 at 76.974 kb on - strand, within BACOVA_01666 at 76.985 kb on + strand, within BACOVA_01666 at 76.985 kb on + strand, within BACOVA_01666 at 77.221 kb on + strand at 77.222 kb on - strand at 77.314 kb on - strand at 77.324 kb on - strand at 77.432 kb on - strand at 77.449 kb on + strand at 77.458 kb on - strand at 77.473 kb on + strand at 77.475 kb on + strand at 77.476 kb on - strand at 77.519 kb on - strand at 77.552 kb on - strand at 77.552 kb on - strand at 77.552 kb on - strand at 77.559 kb on - strand at 77.579 kb on + strand at 77.580 kb on - strand at 77.584 kb on - strand at 77.813 kb on - strand, within BACOVA_01667 at 77.900 kb on + strand, within BACOVA_01667 at 78.109 kb on + strand, within BACOVA_01667 at 78.151 kb on + strand, within BACOVA_01667 at 78.152 kb on - strand, within BACOVA_01667 at 78.214 kb on + strand, within BACOVA_01667 at 78.273 kb on + strand, within BACOVA_01667 at 78.274 kb on - strand, within BACOVA_01667 at 78.276 kb on + strand, within BACOVA_01667 at 78.298 kb on + strand, within BACOVA_01667 at 78.337 kb on - strand, within BACOVA_01667 at 78.337 kb on - strand, within BACOVA_01667 at 78.436 kb on - strand, within BACOVA_01667 at 78.436 kb on - strand, within BACOVA_01667 at 78.459 kb on + strand, within BACOVA_01667 at 78.460 kb on - strand, within BACOVA_01667 at 78.460 kb on - strand, within BACOVA_01667 at 78.463 kb on - strand, within BACOVA_01667 at 78.594 kb on + strand, within BACOVA_01667 at 78.672 kb on + strand, within BACOVA_01667 at 78.673 kb on - strand, within BACOVA_01667 at 78.673 kb on - strand, within BACOVA_01667 at 78.673 kb on - strand, within BACOVA_01667 at 78.679 kb on - strand, within BACOVA_01667 at 78.679 kb on - strand, within BACOVA_01667 at 78.730 kb on - strand, within BACOVA_01667 at 78.730 kb on - strand, within BACOVA_01667 at 78.858 kb on + strand, within BACOVA_01667 at 78.858 kb on + strand, within BACOVA_01667 at 78.909 kb on - strand, within BACOVA_01667 at 78.918 kb on + strand, within BACOVA_01667 at 78.918 kb on + strand, within BACOVA_01667 at 78.919 kb on - strand, within BACOVA_01667 at 78.919 kb on - strand, within BACOVA_01667 at 78.932 kb on - strand, within BACOVA_01667 at 78.932 kb on - strand, within BACOVA_01667 at 78.934 kb on - strand, within BACOVA_01667 at 78.944 kb on - strand, within BACOVA_01667 at 78.999 kb on + strand, within BACOVA_01667 at 79.032 kb on - strand, within BACOVA_01667 at 79.192 kb on - strand, within BACOVA_01667 at 79.192 kb on - strand, within BACOVA_01667 at 79.192 kb on - strand, within BACOVA_01667 at 79.196 kb on - strand, within BACOVA_01667 at 79.275 kb on - strand, within BACOVA_01667 at 79.300 kb on - strand, within BACOVA_01667 at 79.370 kb on + strand, within BACOVA_01667 at 79.422 kb on + strand, within BACOVA_01667 at 79.423 kb on - strand, within BACOVA_01667 at 79.423 kb on - strand, within BACOVA_01667 at 79.472 kb on - strand, within BACOVA_01667 at 79.473 kb on + strand, within BACOVA_01667 at 79.570 kb on + strand, within BACOVA_01667 at 79.677 kb on - strand, within BACOVA_01667 at 79.750 kb on + strand, within BACOVA_01667 at 79.751 kb on - strand, within BACOVA_01667 at 79.788 kb on + strand, within BACOVA_01667 at 79.788 kb on + strand, within BACOVA_01667 at 79.789 kb on - strand, within BACOVA_01667 at 79.835 kb on - strand, within BACOVA_01667 at 79.916 kb on - strand, within BACOVA_01667 at 79.967 kb on - strand, within BACOVA_01667 at 79.976 kb on + strand, within BACOVA_01667 at 80.032 kb on + strand, within BACOVA_01667 at 80.032 kb on + strand, within BACOVA_01667 at 80.033 kb on - strand, within BACOVA_01667 at 80.105 kb on + strand at 80.105 kb on + strand at 80.106 kb on - strand at 80.106 kb on - strand at 80.124 kb on - strand at 80.124 kb on - strand at 80.124 kb on - strand at 80.205 kb on + strand at 80.206 kb on - strand at 80.276 kb on - strand at 80.294 kb on + strand at 80.295 kb on - strand at 80.353 kb on + strand at 80.367 kb on + strand at 80.397 kb on - strand at 80.397 kb on - strand at 80.460 kb on + strand at 80.461 kb on - strand at 80.461 kb on - strand at 80.488 kb on + strand at 80.488 kb on + strand at 80.489 kb on - strand at 80.660 kb on + strand, within BACOVA_01668 at 80.725 kb on - strand, within BACOVA_01668 at 80.725 kb on - strand, within BACOVA_01668 at 80.757 kb on + strand, within BACOVA_01668 at 80.788 kb on - strand, within BACOVA_01668 at 80.802 kb on + strand, within BACOVA_01668 at 80.842 kb on + strand, within BACOVA_01668 at 80.842 kb on + strand, within BACOVA_01668 at 80.910 kb on + strand, within BACOVA_01668 at 80.911 kb on - strand, within BACOVA_01668 at 80.915 kb on - strand, within BACOVA_01668 at 80.915 kb on - strand, within BACOVA_01668 at 80.921 kb on + strand, within BACOVA_01668 at 80.922 kb on - strand, within BACOVA_01668 at 80.922 kb on - strand, within BACOVA_01668 at 80.986 kb on + strand, within BACOVA_01668 at 81.046 kb on + strand, within BACOVA_01668 at 81.046 kb on + strand, within BACOVA_01668 at 81.047 kb on - strand, within BACOVA_01668 at 81.057 kb on + strand, within BACOVA_01668 at 81.058 kb on - strand, within BACOVA_01668 at 81.079 kb on + strand, within BACOVA_01668 at 81.113 kb on + strand, within BACOVA_01668 at 81.273 kb on - strand, within BACOVA_01668 at 81.273 kb on - strand, within BACOVA_01668 at 81.276 kb on - strand, within BACOVA_01668 at 81.309 kb on + strand, within BACOVA_01668 at 81.310 kb on - strand, within BACOVA_01668 at 81.310 kb on - strand, within BACOVA_01668 at 81.337 kb on - strand, within BACOVA_01668
Per-strain Table
Position Strand Gene LocusTag Fraction amylopectin from maize 2.5 mg/ml (C) remove 76,425 + BACOVA_01666 0.40 -0.8 76,497 - BACOVA_01666 0.45 +1.0 76,499 - BACOVA_01666 0.45 +0.1 76,504 - BACOVA_01666 0.46 -0.8 76,515 - BACOVA_01666 0.46 -0.9 76,517 + BACOVA_01666 0.46 -1.6 76,541 + BACOVA_01666 0.48 +0.2 76,558 + BACOVA_01666 0.49 -1.3 76,593 + BACOVA_01666 0.52 +1.2 76,643 - BACOVA_01666 0.55 +2.2 76,675 - BACOVA_01666 0.57 -0.6 76,705 + BACOVA_01666 0.59 -0.6 76,705 + BACOVA_01666 0.59 +0.2 76,705 + BACOVA_01666 0.59 +1.5 76,706 - BACOVA_01666 0.59 +0.7 76,852 - BACOVA_01666 0.69 -1.5 76,967 + BACOVA_01666 0.77 -1.6 76,974 - BACOVA_01666 0.77 +0.1 76,985 + BACOVA_01666 0.78 +0.0 76,985 + BACOVA_01666 0.78 +0.5 77,221 + -1.0 77,222 - +0.2 77,314 - +1.7 77,324 - -1.3 77,432 - +2.5 77,449 + +1.4 77,458 - +1.2 77,473 + +1.0 77,475 + -2.1 77,476 - -0.8 77,519 - +1.0 77,552 - +0.7 77,552 - -1.6 77,552 - +2.1 77,559 - +1.2 77,579 + -0.8 77,580 - -2.7 77,584 - +1.4 77,813 - BACOVA_01667 0.16 +1.8 77,900 + BACOVA_01667 0.18 -0.6 78,109 + BACOVA_01667 0.25 +0.6 78,151 + BACOVA_01667 0.27 -0.8 78,152 - BACOVA_01667 0.27 -0.3 78,214 + BACOVA_01667 0.29 -1.5 78,273 + BACOVA_01667 0.31 -0.8 78,274 - BACOVA_01667 0.31 -1.0 78,276 + BACOVA_01667 0.31 +2.6 78,298 + BACOVA_01667 0.31 -1.5 78,337 - BACOVA_01667 0.33 -1.5 78,337 - BACOVA_01667 0.33 +1.7 78,436 - BACOVA_01667 0.36 +2.2 78,436 - BACOVA_01667 0.36 +1.2 78,459 + BACOVA_01667 0.37 +0.7 78,460 - BACOVA_01667 0.37 +1.0 78,460 - BACOVA_01667 0.37 +0.3 78,463 - BACOVA_01667 0.37 +0.7 78,594 + BACOVA_01667 0.41 +0.7 78,672 + BACOVA_01667 0.44 -1.9 78,673 - BACOVA_01667 0.44 +2.6 78,673 - BACOVA_01667 0.44 +1.0 78,673 - BACOVA_01667 0.44 +0.9 78,679 - BACOVA_01667 0.44 +0.7 78,679 - BACOVA_01667 0.44 -0.7 78,730 - BACOVA_01667 0.45 +1.8 78,730 - BACOVA_01667 0.45 -0.3 78,858 + BACOVA_01667 0.50 +2.2 78,858 + BACOVA_01667 0.50 +1.5 78,909 - BACOVA_01667 0.51 -0.6 78,918 + BACOVA_01667 0.51 -0.6 78,918 + BACOVA_01667 0.51 +0.8 78,919 - BACOVA_01667 0.52 +0.2 78,919 - BACOVA_01667 0.52 -0.6 78,932 - BACOVA_01667 0.52 -0.6 78,932 - BACOVA_01667 0.52 -1.3 78,934 - BACOVA_01667 0.52 -1.6 78,944 - BACOVA_01667 0.52 +1.2 78,999 + BACOVA_01667 0.54 +0.6 79,032 - BACOVA_01667 0.55 -0.3 79,192 - BACOVA_01667 0.60 +1.2 79,192 - BACOVA_01667 0.60 +0.2 79,192 - BACOVA_01667 0.60 -0.5 79,196 - BACOVA_01667 0.61 +1.0 79,275 - BACOVA_01667 0.63 -1.6 79,300 - BACOVA_01667 0.64 +0.2 79,370 + BACOVA_01667 0.66 -0.8 79,422 + BACOVA_01667 0.68 +3.4 79,423 - BACOVA_01667 0.68 +0.4 79,423 - BACOVA_01667 0.68 +2.4 79,472 - BACOVA_01667 0.69 +0.2 79,473 + BACOVA_01667 0.69 -1.6 79,570 + BACOVA_01667 0.73 -0.6 79,677 - BACOVA_01667 0.76 +0.9 79,750 + BACOVA_01667 0.78 +0.2 79,751 - BACOVA_01667 0.79 +0.2 79,788 + BACOVA_01667 0.80 +0.2 79,788 + BACOVA_01667 0.80 -0.9 79,789 - BACOVA_01667 0.80 +0.2 79,835 - BACOVA_01667 0.81 +2.0 79,916 - BACOVA_01667 0.84 -1.0 79,967 - BACOVA_01667 0.86 +3.1 79,976 + BACOVA_01667 0.86 +1.6 80,032 + BACOVA_01667 0.88 -0.6 80,032 + BACOVA_01667 0.88 -0.9 80,033 - BACOVA_01667 0.88 -1.7 80,105 + -0.1 80,105 + -0.1 80,106 - +2.0 80,106 - -0.1 80,124 - -0.1 80,124 - +0.4 80,124 - -0.8 80,205 + +3.4 80,206 - -0.0 80,276 - -0.6 80,294 + +0.7 80,295 - -1.1 80,353 + -1.8 80,367 + -2.6 80,397 - +0.2 80,397 - -1.1 80,460 + -1.6 80,461 - +2.2 80,461 - -0.8 80,488 + -0.9 80,488 + +1.2 80,489 - +0.2 80,660 + BACOVA_01668 0.16 -0.9 80,725 - BACOVA_01668 0.21 +0.1 80,725 - BACOVA_01668 0.21 +1.2 80,757 + BACOVA_01668 0.24 +0.5 80,788 - BACOVA_01668 0.26 +0.1 80,802 + BACOVA_01668 0.28 -2.9 80,842 + BACOVA_01668 0.31 -1.0 80,842 + BACOVA_01668 0.31 -0.4 80,910 + BACOVA_01668 0.37 +0.1 80,911 - BACOVA_01668 0.37 +2.2 80,915 - BACOVA_01668 0.37 -0.3 80,915 - BACOVA_01668 0.37 -0.6 80,921 + BACOVA_01668 0.37 +1.5 80,922 - BACOVA_01668 0.38 -0.9 80,922 - BACOVA_01668 0.38 +2.2 80,986 + BACOVA_01668 0.43 +0.1 81,046 + BACOVA_01668 0.48 -1.1 81,046 + BACOVA_01668 0.48 +1.2 81,047 - BACOVA_01668 0.48 +0.2 81,057 + BACOVA_01668 0.49 +0.2 81,058 - BACOVA_01668 0.49 +1.9 81,079 + BACOVA_01668 0.51 +2.2 81,113 + BACOVA_01668 0.53 +0.4 81,273 - BACOVA_01668 0.67 -0.1 81,273 - BACOVA_01668 0.67 -0.6 81,276 - BACOVA_01668 0.67 -1.7 81,309 + BACOVA_01668 0.70 -2.3 81,310 - BACOVA_01668 0.70 +0.5 81,310 - BACOVA_01668 0.70 +0.2 81,337 - BACOVA_01668 0.72 +0.4
Or see this region's nucleotide sequence