Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_01541

Experiment: amylopectin from maize 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_01540 and BACOVA_01541 are separated by 41 nucleotidesBACOVA_01541 and BACOVA_01542 are separated by 31 nucleotides BACOVA_01540: BACOVA_01540 - OmpA family protein, at 37,491 to 38,660 _01540 BACOVA_01541: BACOVA_01541 - DNA-binding protein HU, at 38,702 to 38,968 _01541 BACOVA_01542: BACOVA_01542 - hypothetical protein, at 39,000 to 41,870 _01542 Position (kb) 38 39Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 37.748 kb on + strand, within BACOVA_01540at 37.749 kb on - strand, within BACOVA_01540at 37.769 kb on + strand, within BACOVA_01540at 37.770 kb on - strand, within BACOVA_01540at 37.925 kb on + strand, within BACOVA_01540at 37.925 kb on + strand, within BACOVA_01540at 37.946 kb on - strand, within BACOVA_01540at 37.999 kb on - strand, within BACOVA_01540at 38.004 kb on + strand, within BACOVA_01540at 38.004 kb on + strand, within BACOVA_01540at 38.295 kb on + strand, within BACOVA_01540at 38.314 kb on + strand, within BACOVA_01540at 38.341 kb on + strand, within BACOVA_01540at 38.454 kb on - strand, within BACOVA_01540at 38.494 kb on + strand, within BACOVA_01540at 38.494 kb on + strand, within BACOVA_01540at 38.494 kb on + strand, within BACOVA_01540at 38.494 kb on + strand, within BACOVA_01540at 38.494 kb on + strand, within BACOVA_01540at 38.499 kb on - strand, within BACOVA_01540at 38.523 kb on - strand, within BACOVA_01540at 38.525 kb on - strand, within BACOVA_01540at 38.571 kb on - strandat 38.571 kb on - strandat 38.625 kb on + strandat 38.625 kb on + strandat 38.626 kb on - strandat 38.628 kb on + strandat 38.708 kb on + strandat 38.857 kb on + strand, within BACOVA_01541at 38.857 kb on + strand, within BACOVA_01541at 38.895 kb on - strand, within BACOVA_01541at 38.895 kb on - strand, within BACOVA_01541at 38.905 kb on + strand, within BACOVA_01541at 38.969 kb on - strandat 38.992 kb on - strandat 38.992 kb on - strandat 38.993 kb on + strandat 38.994 kb on - strandat 38.994 kb on - strandat 38.994 kb on - strandat 38.995 kb on + strandat 39.001 kb on + strandat 39.080 kb on - strandat 39.087 kb on - strandat 39.105 kb on - strandat 39.114 kb on + strandat 39.114 kb on + strandat 39.115 kb on - strandat 39.119 kb on + strandat 39.120 kb on - strandat 39.120 kb on - strandat 39.120 kb on - strandat 39.158 kb on + strandat 39.169 kb on - strandat 39.170 kb on + strandat 39.170 kb on + strandat 39.170 kb on + strandat 39.170 kb on + strandat 39.170 kb on + strandat 39.171 kb on - strandat 39.172 kb on + strandat 39.172 kb on + strandat 39.173 kb on - strandat 39.191 kb on - strandat 39.226 kb on + strandat 39.227 kb on - strandat 39.281 kb on + strandat 39.336 kb on - strand, within BACOVA_01542at 39.365 kb on + strand, within BACOVA_01542at 39.367 kb on + strand, within BACOVA_01542at 39.368 kb on - strand, within BACOVA_01542at 39.368 kb on - strand, within BACOVA_01542at 39.368 kb on - strand, within BACOVA_01542at 39.372 kb on + strand, within BACOVA_01542at 39.373 kb on - strand, within BACOVA_01542at 39.375 kb on + strand, within BACOVA_01542at 39.375 kb on + strand, within BACOVA_01542at 39.377 kb on + strand, within BACOVA_01542at 39.378 kb on - strand, within BACOVA_01542at 39.387 kb on + strand, within BACOVA_01542at 39.401 kb on - strand, within BACOVA_01542at 39.401 kb on - strand, within BACOVA_01542at 39.402 kb on + strand, within BACOVA_01542at 39.402 kb on + strand, within BACOVA_01542at 39.403 kb on - strand, within BACOVA_01542at 39.403 kb on - strand, within BACOVA_01542at 39.403 kb on - strand, within BACOVA_01542at 39.403 kb on - strand, within BACOVA_01542at 39.418 kb on - strand, within BACOVA_01542at 39.422 kb on + strand, within BACOVA_01542at 39.423 kb on - strand, within BACOVA_01542at 39.423 kb on - strand, within BACOVA_01542at 39.445 kb on + strand, within BACOVA_01542at 39.446 kb on - strand, within BACOVA_01542at 39.446 kb on - strand, within BACOVA_01542at 39.446 kb on - strand, within BACOVA_01542at 39.465 kb on + strand, within BACOVA_01542at 39.466 kb on - strand, within BACOVA_01542at 39.467 kb on + strand, within BACOVA_01542at 39.468 kb on - strand, within BACOVA_01542at 39.479 kb on + strand, within BACOVA_01542at 39.497 kb on + strand, within BACOVA_01542at 39.511 kb on + strand, within BACOVA_01542at 39.511 kb on + strand, within BACOVA_01542at 39.534 kb on - strand, within BACOVA_01542at 39.535 kb on + strand, within BACOVA_01542at 39.535 kb on + strand, within BACOVA_01542at 39.536 kb on - strand, within BACOVA_01542at 39.537 kb on - strand, within BACOVA_01542at 39.554 kb on + strand, within BACOVA_01542at 39.555 kb on - strand, within BACOVA_01542at 39.560 kb on + strand, within BACOVA_01542at 39.561 kb on - strand, within BACOVA_01542at 39.564 kb on - strand, within BACOVA_01542at 39.582 kb on + strand, within BACOVA_01542at 39.605 kb on + strand, within BACOVA_01542at 39.658 kb on + strand, within BACOVA_01542at 39.659 kb on - strand, within BACOVA_01542at 39.690 kb on + strand, within BACOVA_01542at 39.698 kb on + strand, within BACOVA_01542at 39.698 kb on + strand, within BACOVA_01542at 39.698 kb on + strand, within BACOVA_01542at 39.699 kb on - strand, within BACOVA_01542at 39.699 kb on - strand, within BACOVA_01542at 39.699 kb on - strand, within BACOVA_01542at 39.701 kb on - strand, within BACOVA_01542at 39.701 kb on - strand, within BACOVA_01542at 39.705 kb on - strand, within BACOVA_01542at 39.751 kb on + strand, within BACOVA_01542at 39.785 kb on + strand, within BACOVA_01542at 39.789 kb on - strand, within BACOVA_01542at 39.838 kb on + strand, within BACOVA_01542at 39.876 kb on - strand, within BACOVA_01542at 39.899 kb on + strand, within BACOVA_01542at 39.962 kb on + strand, within BACOVA_01542

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Per-strain Table

Position Strand Gene LocusTag Fraction amylopectin from maize 2.5 mg/ml (C)
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37,748 + BACOVA_01540 0.22 -1.1
37,749 - BACOVA_01540 0.22 -0.6
37,769 + BACOVA_01540 0.24 -2.1
37,770 - BACOVA_01540 0.24 -0.5
37,925 + BACOVA_01540 0.37 -0.2
37,925 + BACOVA_01540 0.37 +0.2
37,946 - BACOVA_01540 0.39 -0.6
37,999 - BACOVA_01540 0.43 +4.3
38,004 + BACOVA_01540 0.44 -1.6
38,004 + BACOVA_01540 0.44 +2.0
38,295 + BACOVA_01540 0.69 +1.3
38,314 + BACOVA_01540 0.70 +3.0
38,341 + BACOVA_01540 0.73 -1.2
38,454 - BACOVA_01540 0.82 -2.1
38,494 + BACOVA_01540 0.86 +0.8
38,494 + BACOVA_01540 0.86 -0.4
38,494 + BACOVA_01540 0.86 -0.2
38,494 + BACOVA_01540 0.86 -2.8
38,494 + BACOVA_01540 0.86 -0.2
38,499 - BACOVA_01540 0.86 -0.1
38,523 - BACOVA_01540 0.88 +1.3
38,525 - BACOVA_01540 0.88 -0.7
38,571 - +1.0
38,571 - +0.5
38,625 + -0.2
38,625 + -1.1
38,626 - +1.4
38,628 + -0.2
38,708 + -0.7
38,857 + BACOVA_01541 0.58 +3.3
38,857 + BACOVA_01541 0.58 -1.3
38,895 - BACOVA_01541 0.72 +1.3
38,895 - BACOVA_01541 0.72 -0.1
38,905 + BACOVA_01541 0.76 -0.9
38,969 - +0.9
38,992 - +1.9
38,992 - +1.0
38,993 + +0.0
38,994 - +2.3
38,994 - +0.2
38,994 - +0.3
38,995 + -2.5
39,001 + -0.2
39,080 - -1.4
39,087 - +3.0
39,105 - +1.9
39,114 + +1.8
39,114 + -0.7
39,115 - +0.3
39,119 + -2.0
39,120 - -0.1
39,120 - +0.8
39,120 - +0.0
39,158 + -2.0
39,169 - +1.9
39,170 + -1.2
39,170 + -0.7
39,170 + -2.2
39,170 + +1.3
39,170 + +1.5
39,171 - +1.3
39,172 + +1.3
39,172 + -0.5
39,173 - +0.3
39,191 - -1.3
39,226 + +1.3
39,227 - +2.0
39,281 + -1.0
39,336 - BACOVA_01542 0.12 +0.0
39,365 + BACOVA_01542 0.13 -1.3
39,367 + BACOVA_01542 0.13 -0.7
39,368 - BACOVA_01542 0.13 +0.9
39,368 - BACOVA_01542 0.13 +0.6
39,368 - BACOVA_01542 0.13 -0.7
39,372 + BACOVA_01542 0.13 -0.2
39,373 - BACOVA_01542 0.13 +2.8
39,375 + BACOVA_01542 0.13 -0.7
39,375 + BACOVA_01542 0.13 +0.1
39,377 + BACOVA_01542 0.13 -0.5
39,378 - BACOVA_01542 0.13 +2.1
39,387 + BACOVA_01542 0.13 -0.7
39,401 - BACOVA_01542 0.14 +2.6
39,401 - BACOVA_01542 0.14 +0.8
39,402 + BACOVA_01542 0.14 -2.5
39,402 + BACOVA_01542 0.14 -0.7
39,403 - BACOVA_01542 0.14 +1.4
39,403 - BACOVA_01542 0.14 +0.8
39,403 - BACOVA_01542 0.14 +0.8
39,403 - BACOVA_01542 0.14 -2.0
39,418 - BACOVA_01542 0.15 +0.3
39,422 + BACOVA_01542 0.15 -2.6
39,423 - BACOVA_01542 0.15 -1.1
39,423 - BACOVA_01542 0.15 +3.1
39,445 + BACOVA_01542 0.15 -2.2
39,446 - BACOVA_01542 0.16 -0.7
39,446 - BACOVA_01542 0.16 +0.3
39,446 - BACOVA_01542 0.16 +0.8
39,465 + BACOVA_01542 0.16 +0.4
39,466 - BACOVA_01542 0.16 +3.8
39,467 + BACOVA_01542 0.16 -0.4
39,468 - BACOVA_01542 0.16 +0.5
39,479 + BACOVA_01542 0.17 +1.8
39,497 + BACOVA_01542 0.17 +0.4
39,511 + BACOVA_01542 0.18 -0.5
39,511 + BACOVA_01542 0.18 -1.2
39,534 - BACOVA_01542 0.19 +0.3
39,535 + BACOVA_01542 0.19 -1.4
39,535 + BACOVA_01542 0.19 +2.3
39,536 - BACOVA_01542 0.19 +1.5
39,537 - BACOVA_01542 0.19 -0.4
39,554 + BACOVA_01542 0.19 -0.2
39,555 - BACOVA_01542 0.19 +0.6
39,560 + BACOVA_01542 0.20 -1.1
39,561 - BACOVA_01542 0.20 +0.2
39,564 - BACOVA_01542 0.20 +2.5
39,582 + BACOVA_01542 0.20 +0.5
39,605 + BACOVA_01542 0.21 -1.4
39,658 + BACOVA_01542 0.23 +3.6
39,659 - BACOVA_01542 0.23 -0.1
39,690 + BACOVA_01542 0.24 -0.1
39,698 + BACOVA_01542 0.24 -1.6
39,698 + BACOVA_01542 0.24 +0.3
39,698 + BACOVA_01542 0.24 +1.0
39,699 - BACOVA_01542 0.24 +1.8
39,699 - BACOVA_01542 0.24 +1.5
39,699 - BACOVA_01542 0.24 -0.4
39,701 - BACOVA_01542 0.24 +0.3
39,701 - BACOVA_01542 0.24 +1.9
39,705 - BACOVA_01542 0.25 -0.2
39,751 + BACOVA_01542 0.26 -0.5
39,785 + BACOVA_01542 0.27 -0.6
39,789 - BACOVA_01542 0.27 +1.3
39,838 + BACOVA_01542 0.29 -1.7
39,876 - BACOVA_01542 0.31 +0.8
39,899 + BACOVA_01542 0.31 +0.0
39,962 + BACOVA_01542 0.34 -1.5

Or see this region's nucleotide sequence