Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_01538

Experiment: amylopectin from maize 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_01537 and BACOVA_01538 are separated by 302 nucleotidesBACOVA_01538 and BACOVA_01539 are separated by 144 nucleotidesBACOVA_01539 and BACOVA_01540 are separated by 60 nucleotides BACOVA_01537: BACOVA_01537 - hypothetical protein, at 34,951 to 35,820 _01537 BACOVA_01538: BACOVA_01538 - MIP family channel protein, at 36,123 to 36,782 _01538 BACOVA_01539: BACOVA_01539 - hypothetical protein, at 36,927 to 37,430 _01539 BACOVA_01540: BACOVA_01540 - OmpA family protein, at 37,491 to 38,660 _01540 Position (kb) 36 37Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 35.128 kb on + strand, within BACOVA_01537at 35.128 kb on + strand, within BACOVA_01537at 35.129 kb on - strand, within BACOVA_01537at 35.134 kb on + strand, within BACOVA_01537at 35.135 kb on - strand, within BACOVA_01537at 35.135 kb on - strand, within BACOVA_01537at 35.135 kb on - strand, within BACOVA_01537at 35.167 kb on - strand, within BACOVA_01537at 35.188 kb on - strand, within BACOVA_01537at 35.241 kb on - strand, within BACOVA_01537at 35.241 kb on - strand, within BACOVA_01537at 35.314 kb on + strand, within BACOVA_01537at 35.330 kb on + strand, within BACOVA_01537at 35.331 kb on - strand, within BACOVA_01537at 35.421 kb on - strand, within BACOVA_01537at 35.438 kb on + strand, within BACOVA_01537at 35.514 kb on - strand, within BACOVA_01537at 35.519 kb on + strand, within BACOVA_01537at 35.519 kb on + strand, within BACOVA_01537at 35.520 kb on - strand, within BACOVA_01537at 35.520 kb on - strand, within BACOVA_01537at 35.548 kb on + strand, within BACOVA_01537at 35.549 kb on - strand, within BACOVA_01537at 35.549 kb on - strand, within BACOVA_01537at 35.551 kb on + strand, within BACOVA_01537at 35.552 kb on - strand, within BACOVA_01537at 35.560 kb on + strand, within BACOVA_01537at 35.560 kb on + strand, within BACOVA_01537at 35.561 kb on - strand, within BACOVA_01537at 35.592 kb on + strand, within BACOVA_01537at 35.637 kb on + strand, within BACOVA_01537at 35.638 kb on - strand, within BACOVA_01537at 35.644 kb on + strand, within BACOVA_01537at 35.646 kb on + strand, within BACOVA_01537at 35.647 kb on - strand, within BACOVA_01537at 35.647 kb on - strand, within BACOVA_01537at 35.655 kb on + strand, within BACOVA_01537at 35.656 kb on - strand, within BACOVA_01537at 35.656 kb on - strand, within BACOVA_01537at 35.703 kb on - strand, within BACOVA_01537at 35.734 kb on - strandat 35.743 kb on - strandat 35.786 kb on + strandat 35.786 kb on + strandat 35.806 kb on + strandat 35.806 kb on + strandat 35.806 kb on + strandat 35.818 kb on + strandat 35.818 kb on + strandat 35.835 kb on - strandat 35.838 kb on - strandat 35.838 kb on - strandat 35.838 kb on - strandat 35.838 kb on - strandat 35.908 kb on + strandat 35.908 kb on + strandat 35.913 kb on + strandat 35.960 kb on - strandat 35.962 kb on + strandat 36.036 kb on - strandat 36.037 kb on + strandat 36.037 kb on + strandat 36.037 kb on + strandat 36.037 kb on + strandat 36.037 kb on + strandat 36.038 kb on - strandat 36.038 kb on - strandat 36.038 kb on - strandat 36.058 kb on + strandat 36.059 kb on - strandat 36.065 kb on - strandat 36.065 kb on - strandat 36.065 kb on - strandat 36.067 kb on + strandat 36.067 kb on + strandat 36.082 kb on + strandat 36.082 kb on + strandat 36.136 kb on - strandat 36.160 kb on - strandat 36.209 kb on + strand, within BACOVA_01538at 36.209 kb on + strand, within BACOVA_01538at 36.210 kb on - strand, within BACOVA_01538at 36.282 kb on - strand, within BACOVA_01538at 36.285 kb on + strand, within BACOVA_01538at 36.285 kb on + strand, within BACOVA_01538at 36.285 kb on + strand, within BACOVA_01538at 36.286 kb on - strand, within BACOVA_01538at 36.290 kb on + strand, within BACOVA_01538at 36.290 kb on + strand, within BACOVA_01538at 36.290 kb on + strand, within BACOVA_01538at 36.291 kb on - strand, within BACOVA_01538at 36.291 kb on - strand, within BACOVA_01538at 36.291 kb on - strand, within BACOVA_01538at 36.291 kb on - strand, within BACOVA_01538at 36.291 kb on - strand, within BACOVA_01538at 36.291 kb on - strand, within BACOVA_01538at 36.344 kb on + strand, within BACOVA_01538at 36.345 kb on - strand, within BACOVA_01538at 36.345 kb on - strand, within BACOVA_01538at 36.370 kb on - strand, within BACOVA_01538at 36.370 kb on - strand, within BACOVA_01538at 36.392 kb on + strand, within BACOVA_01538at 36.392 kb on + strand, within BACOVA_01538at 36.392 kb on + strand, within BACOVA_01538at 36.393 kb on - strand, within BACOVA_01538at 36.507 kb on + strand, within BACOVA_01538at 36.528 kb on + strand, within BACOVA_01538at 36.533 kb on + strand, within BACOVA_01538at 36.535 kb on + strand, within BACOVA_01538at 36.536 kb on - strand, within BACOVA_01538at 36.536 kb on - strand, within BACOVA_01538at 36.632 kb on - strand, within BACOVA_01538at 36.798 kb on - strandat 36.805 kb on + strandat 36.835 kb on + strandat 36.843 kb on - strandat 36.850 kb on + strandat 36.850 kb on + strandat 36.928 kb on + strandat 36.928 kb on + strandat 36.988 kb on + strand, within BACOVA_01539at 36.989 kb on - strand, within BACOVA_01539at 36.989 kb on - strand, within BACOVA_01539at 37.016 kb on + strand, within BACOVA_01539at 37.017 kb on - strand, within BACOVA_01539at 37.096 kb on + strand, within BACOVA_01539at 37.186 kb on + strand, within BACOVA_01539at 37.187 kb on - strand, within BACOVA_01539at 37.273 kb on + strand, within BACOVA_01539at 37.274 kb on - strand, within BACOVA_01539at 37.274 kb on - strand, within BACOVA_01539at 37.316 kb on + strand, within BACOVA_01539at 37.316 kb on + strand, within BACOVA_01539at 37.317 kb on - strand, within BACOVA_01539at 37.319 kb on + strand, within BACOVA_01539at 37.319 kb on + strand, within BACOVA_01539at 37.319 kb on + strand, within BACOVA_01539at 37.319 kb on + strand, within BACOVA_01539at 37.319 kb on + strand, within BACOVA_01539at 37.320 kb on - strand, within BACOVA_01539at 37.321 kb on + strand, within BACOVA_01539at 37.321 kb on + strand, within BACOVA_01539at 37.321 kb on + strand, within BACOVA_01539at 37.322 kb on - strand, within BACOVA_01539at 37.322 kb on - strand, within BACOVA_01539at 37.322 kb on - strand, within BACOVA_01539at 37.323 kb on + strand, within BACOVA_01539at 37.324 kb on - strand, within BACOVA_01539at 37.326 kb on + strand, within BACOVA_01539at 37.327 kb on - strand, within BACOVA_01539at 37.430 kb on + strandat 37.490 kb on - strandat 37.504 kb on - strandat 37.586 kb on + strandat 37.603 kb on - strandat 37.609 kb on + strand, within BACOVA_01540at 37.615 kb on + strand, within BACOVA_01540at 37.616 kb on - strand, within BACOVA_01540at 37.616 kb on - strand, within BACOVA_01540at 37.616 kb on - strand, within BACOVA_01540at 37.748 kb on + strand, within BACOVA_01540at 37.749 kb on - strand, within BACOVA_01540at 37.769 kb on + strand, within BACOVA_01540at 37.770 kb on - strand, within BACOVA_01540

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Per-strain Table

Position Strand Gene LocusTag Fraction amylopectin from maize 2.5 mg/ml (C)
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35,128 + BACOVA_01537 0.20 +1.1
35,128 + BACOVA_01537 0.20 -0.8
35,129 - BACOVA_01537 0.20 -1.6
35,134 + BACOVA_01537 0.21 -2.8
35,135 - BACOVA_01537 0.21 -1.5
35,135 - BACOVA_01537 0.21 -1.5
35,135 - BACOVA_01537 0.21 -2.5
35,167 - BACOVA_01537 0.25 -1.0
35,188 - BACOVA_01537 0.27 +1.8
35,241 - BACOVA_01537 0.33 +1.3
35,241 - BACOVA_01537 0.33 +0.3
35,314 + BACOVA_01537 0.42 -0.7
35,330 + BACOVA_01537 0.44 +0.0
35,331 - BACOVA_01537 0.44 -0.2
35,421 - BACOVA_01537 0.54 -1.6
35,438 + BACOVA_01537 0.56 -1.9
35,514 - BACOVA_01537 0.65 -1.2
35,519 + BACOVA_01537 0.65 -1.2
35,519 + BACOVA_01537 0.65 -0.3
35,520 - BACOVA_01537 0.65 +0.8
35,520 - BACOVA_01537 0.65 -2.7
35,548 + BACOVA_01537 0.69 -0.3
35,549 - BACOVA_01537 0.69 -1.4
35,549 - BACOVA_01537 0.69 -0.2
35,551 + BACOVA_01537 0.69 -1.0
35,552 - BACOVA_01537 0.69 -2.2
35,560 + BACOVA_01537 0.70 -1.6
35,560 + BACOVA_01537 0.70 +0.5
35,561 - BACOVA_01537 0.70 -2.1
35,592 + BACOVA_01537 0.74 -1.1
35,637 + BACOVA_01537 0.79 +1.3
35,638 - BACOVA_01537 0.79 +1.1
35,644 + BACOVA_01537 0.80 +2.6
35,646 + BACOVA_01537 0.80 +0.0
35,647 - BACOVA_01537 0.80 -0.6
35,647 - BACOVA_01537 0.80 -1.1
35,655 + BACOVA_01537 0.81 -0.4
35,656 - BACOVA_01537 0.81 -0.8
35,656 - BACOVA_01537 0.81 +1.6
35,703 - BACOVA_01537 0.86 -0.6
35,734 - +0.0
35,743 - +1.3
35,786 + -0.2
35,786 + +0.8
35,806 + +1.8
35,806 + -0.5
35,806 + +0.5
35,818 + +0.8
35,818 + -1.7
35,835 - -0.3
35,838 - +0.3
35,838 - -0.7
35,838 - -0.7
35,838 - +0.8
35,908 + -0.8
35,908 + -1.1
35,913 + +0.3
35,960 - +0.6
35,962 + -1.6
36,036 - +0.9
36,037 + +2.0
36,037 + -2.4
36,037 + +0.3
36,037 + -0.2
36,037 + +0.9
36,038 - -0.8
36,038 - -0.1
36,038 - +0.9
36,058 + +2.3
36,059 - -0.2
36,065 - +1.1
36,065 - -0.3
36,065 - -1.1
36,067 + -1.3
36,067 + +1.9
36,082 + +0.3
36,082 + -0.2
36,136 - +0.3
36,160 - +0.1
36,209 + BACOVA_01538 0.13 +1.9
36,209 + BACOVA_01538 0.13 -0.5
36,210 - BACOVA_01538 0.13 +0.6
36,282 - BACOVA_01538 0.24 +1.8
36,285 + BACOVA_01538 0.25 +0.3
36,285 + BACOVA_01538 0.25 +1.8
36,285 + BACOVA_01538 0.25 -1.1
36,286 - BACOVA_01538 0.25 -0.7
36,290 + BACOVA_01538 0.25 -1.9
36,290 + BACOVA_01538 0.25 -2.5
36,290 + BACOVA_01538 0.25 +0.2
36,291 - BACOVA_01538 0.25 +2.0
36,291 - BACOVA_01538 0.25 -0.6
36,291 - BACOVA_01538 0.25 -0.7
36,291 - BACOVA_01538 0.25 -2.0
36,291 - BACOVA_01538 0.25 -0.7
36,291 - BACOVA_01538 0.25 -0.8
36,344 + BACOVA_01538 0.33 +0.8
36,345 - BACOVA_01538 0.34 -1.4
36,345 - BACOVA_01538 0.34 -1.0
36,370 - BACOVA_01538 0.37 +3.0
36,370 - BACOVA_01538 0.37 -0.8
36,392 + BACOVA_01538 0.41 -0.7
36,392 + BACOVA_01538 0.41 +0.2
36,392 + BACOVA_01538 0.41 +0.0
36,393 - BACOVA_01538 0.41 -0.1
36,507 + BACOVA_01538 0.58 +1.0
36,528 + BACOVA_01538 0.61 +1.1
36,533 + BACOVA_01538 0.62 -2.2
36,535 + BACOVA_01538 0.62 +0.2
36,536 - BACOVA_01538 0.63 -0.5
36,536 - BACOVA_01538 0.63 -0.6
36,632 - BACOVA_01538 0.77 +0.0
36,798 - +1.4
36,805 + -0.7
36,835 + -0.6
36,843 - +0.8
36,850 + +0.0
36,850 + -1.5
36,928 + +0.2
36,928 + +1.3
36,988 + BACOVA_01539 0.12 +2.5
36,989 - BACOVA_01539 0.12 -1.5
36,989 - BACOVA_01539 0.12 +3.8
37,016 + BACOVA_01539 0.18 +0.3
37,017 - BACOVA_01539 0.18 +0.0
37,096 + BACOVA_01539 0.34 +0.3
37,186 + BACOVA_01539 0.51 -1.4
37,187 - BACOVA_01539 0.52 -0.7
37,273 + BACOVA_01539 0.69 +2.3
37,274 - BACOVA_01539 0.69 -0.9
37,274 - BACOVA_01539 0.69 -2.4
37,316 + BACOVA_01539 0.77 -1.7
37,316 + BACOVA_01539 0.77 +0.9
37,317 - BACOVA_01539 0.77 -1.0
37,319 + BACOVA_01539 0.78 -1.7
37,319 + BACOVA_01539 0.78 -0.6
37,319 + BACOVA_01539 0.78 -0.9
37,319 + BACOVA_01539 0.78 -0.5
37,319 + BACOVA_01539 0.78 +0.0
37,320 - BACOVA_01539 0.78 -0.2
37,321 + BACOVA_01539 0.78 -0.9
37,321 + BACOVA_01539 0.78 -0.2
37,321 + BACOVA_01539 0.78 -0.8
37,322 - BACOVA_01539 0.78 -1.4
37,322 - BACOVA_01539 0.78 +0.8
37,322 - BACOVA_01539 0.78 +3.4
37,323 + BACOVA_01539 0.79 -0.7
37,324 - BACOVA_01539 0.79 -0.2
37,326 + BACOVA_01539 0.79 +1.3
37,327 - BACOVA_01539 0.79 +1.3
37,430 + -1.4
37,490 - +0.1
37,504 - -1.4
37,586 + -0.7
37,603 - -1.3
37,609 + BACOVA_01540 0.10 +1.7
37,615 + BACOVA_01540 0.11 -1.4
37,616 - BACOVA_01540 0.11 +1.1
37,616 - BACOVA_01540 0.11 +2.7
37,616 - BACOVA_01540 0.11 +0.5
37,748 + BACOVA_01540 0.22 -1.1
37,749 - BACOVA_01540 0.22 -0.6
37,769 + BACOVA_01540 0.24 -2.1
37,770 - BACOVA_01540 0.24 -0.5

Or see this region's nucleotide sequence