Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_01481

Experiment: amylopectin from maize 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_01478 and BACOVA_01480 are separated by 64 nucleotidesBACOVA_01480 and BACOVA_01481 are separated by 8 nucleotidesBACOVA_01481 and BACOVA_01482 are separated by 192 nucleotidesBACOVA_01482 and BACOVA_01483 are separated by 263 nucleotides BACOVA_01478: BACOVA_01478 - glyoxalase family protein, at 133,894 to 134,265 _01478 BACOVA_01480: BACOVA_01480 - transcriptional regulator, effector binding domain protein, at 134,330 to 135,187 _01480 BACOVA_01481: BACOVA_01481 - hypothetical protein, at 135,196 to 135,306 _01481 BACOVA_01482: BACOVA_01482 - hypothetical protein, at 135,499 to 135,723 _01482 BACOVA_01483: BACOVA_01483 - hypothetical protein, at 135,987 to 137,093 _01483 Position (kb) 135 136Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 134.217 kb on - strand, within BACOVA_01478at 134.226 kb on + strand, within BACOVA_01478at 134.251 kb on + strandat 134.252 kb on - strandat 134.270 kb on + strandat 134.271 kb on - strandat 134.346 kb on + strandat 134.347 kb on - strandat 134.397 kb on + strandat 134.424 kb on - strand, within BACOVA_01480at 134.429 kb on - strand, within BACOVA_01480at 134.448 kb on + strand, within BACOVA_01480at 134.470 kb on - strand, within BACOVA_01480at 134.470 kb on - strand, within BACOVA_01480at 134.502 kb on + strand, within BACOVA_01480at 134.580 kb on - strand, within BACOVA_01480at 134.588 kb on + strand, within BACOVA_01480at 134.588 kb on + strand, within BACOVA_01480at 134.588 kb on + strand, within BACOVA_01480at 134.588 kb on + strand, within BACOVA_01480at 134.589 kb on - strand, within BACOVA_01480at 134.589 kb on - strand, within BACOVA_01480at 134.637 kb on + strand, within BACOVA_01480at 134.637 kb on + strand, within BACOVA_01480at 134.638 kb on - strand, within BACOVA_01480at 134.718 kb on + strand, within BACOVA_01480at 134.718 kb on + strand, within BACOVA_01480at 134.733 kb on + strand, within BACOVA_01480at 134.744 kb on - strand, within BACOVA_01480at 134.845 kb on + strand, within BACOVA_01480at 134.855 kb on - strand, within BACOVA_01480at 134.855 kb on - strand, within BACOVA_01480at 134.855 kb on - strand, within BACOVA_01480at 134.861 kb on + strand, within BACOVA_01480at 134.961 kb on + strand, within BACOVA_01480at 135.111 kb on - strandat 135.111 kb on - strandat 135.126 kb on + strandat 135.126 kb on + strandat 135.126 kb on + strandat 135.191 kb on + strandat 135.192 kb on - strandat 135.250 kb on - strand, within BACOVA_01481at 135.271 kb on + strand, within BACOVA_01481at 135.271 kb on + strand, within BACOVA_01481at 135.282 kb on + strand, within BACOVA_01481at 135.295 kb on + strand, within BACOVA_01481at 135.321 kb on - strandat 135.324 kb on + strandat 135.325 kb on - strandat 135.335 kb on - strandat 135.408 kb on + strandat 135.469 kb on - strandat 135.469 kb on - strandat 135.541 kb on + strand, within BACOVA_01482at 135.542 kb on - strand, within BACOVA_01482at 135.573 kb on - strand, within BACOVA_01482at 135.599 kb on + strand, within BACOVA_01482at 135.599 kb on + strand, within BACOVA_01482at 135.605 kb on + strand, within BACOVA_01482at 135.612 kb on + strand, within BACOVA_01482at 135.613 kb on - strand, within BACOVA_01482at 135.686 kb on + strand, within BACOVA_01482at 135.722 kb on - strandat 135.724 kb on + strandat 135.724 kb on + strandat 135.744 kb on + strandat 135.745 kb on - strandat 135.769 kb on - strandat 135.772 kb on + strandat 135.778 kb on + strandat 135.778 kb on + strandat 135.779 kb on - strandat 135.786 kb on + strandat 135.786 kb on + strandat 135.787 kb on - strandat 135.789 kb on - strandat 135.789 kb on - strandat 135.793 kb on + strandat 135.804 kb on - strandat 135.847 kb on + strandat 135.871 kb on + strandat 135.874 kb on + strandat 135.875 kb on - strandat 135.880 kb on + strandat 135.909 kb on - strandat 135.939 kb on + strandat 135.943 kb on - strandat 135.996 kb on + strandat 136.037 kb on + strandat 136.038 kb on - strandat 136.038 kb on - strandat 136.079 kb on + strandat 136.101 kb on + strand, within BACOVA_01483at 136.101 kb on + strand, within BACOVA_01483at 136.121 kb on + strand, within BACOVA_01483at 136.121 kb on + strand, within BACOVA_01483at 136.121 kb on + strand, within BACOVA_01483at 136.243 kb on - strand, within BACOVA_01483at 136.253 kb on + strand, within BACOVA_01483

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Per-strain Table

Position Strand Gene LocusTag Fraction amylopectin from maize 2.5 mg/ml (C)
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134,217 - BACOVA_01478 0.87 -2.4
134,226 + BACOVA_01478 0.89 -0.4
134,251 + -2.2
134,252 - +2.4
134,270 + -0.3
134,271 - -2.0
134,346 + -3.4
134,347 - -0.4
134,397 + +0.8
134,424 - BACOVA_01480 0.11 +1.4
134,429 - BACOVA_01480 0.12 -1.5
134,448 + BACOVA_01480 0.14 +1.9
134,470 - BACOVA_01480 0.16 +0.7
134,470 - BACOVA_01480 0.16 +2.6
134,502 + BACOVA_01480 0.20 -1.8
134,580 - BACOVA_01480 0.29 +0.4
134,588 + BACOVA_01480 0.30 -0.9
134,588 + BACOVA_01480 0.30 +0.6
134,588 + BACOVA_01480 0.30 -0.8
134,588 + BACOVA_01480 0.30 +0.8
134,589 - BACOVA_01480 0.30 -0.4
134,589 - BACOVA_01480 0.30 +0.9
134,637 + BACOVA_01480 0.36 -0.2
134,637 + BACOVA_01480 0.36 -0.8
134,638 - BACOVA_01480 0.36 -1.1
134,718 + BACOVA_01480 0.45 +0.8
134,718 + BACOVA_01480 0.45 -0.2
134,733 + BACOVA_01480 0.47 -0.4
134,744 - BACOVA_01480 0.48 +0.1
134,845 + BACOVA_01480 0.60 -1.7
134,855 - BACOVA_01480 0.61 +1.4
134,855 - BACOVA_01480 0.61 -0.5
134,855 - BACOVA_01480 0.61 -0.3
134,861 + BACOVA_01480 0.62 -1.4
134,961 + BACOVA_01480 0.74 -1.3
135,111 - -1.0
135,111 - +1.2
135,126 + -0.7
135,126 + +2.4
135,126 + -2.0
135,191 + -0.9
135,192 - -0.4
135,250 - BACOVA_01481 0.49 +0.2
135,271 + BACOVA_01481 0.68 -1.8
135,271 + BACOVA_01481 0.68 -1.7
135,282 + BACOVA_01481 0.77 -1.1
135,295 + BACOVA_01481 0.89 +0.6
135,321 - +0.4
135,324 + +1.4
135,325 - +0.4
135,335 - -0.8
135,408 + +2.4
135,469 - +0.3
135,469 - -0.6
135,541 + BACOVA_01482 0.19 -1.2
135,542 - BACOVA_01482 0.19 -0.4
135,573 - BACOVA_01482 0.33 +0.8
135,599 + BACOVA_01482 0.44 +3.9
135,599 + BACOVA_01482 0.44 -1.0
135,605 + BACOVA_01482 0.47 +2.5
135,612 + BACOVA_01482 0.50 -0.2
135,613 - BACOVA_01482 0.51 +0.1
135,686 + BACOVA_01482 0.83 -0.8
135,722 - -0.9
135,724 + +2.7
135,724 + +1.2
135,744 + +1.4
135,745 - -2.1
135,769 - -1.1
135,772 + -0.4
135,778 + -0.2
135,778 + +1.1
135,779 - -0.1
135,786 + -1.3
135,786 + +0.8
135,787 - -1.5
135,789 - -0.2
135,789 - +0.4
135,793 + +1.4
135,804 - -0.7
135,847 + -0.3
135,871 + +0.1
135,874 + -0.1
135,875 - +1.1
135,880 + -0.1
135,909 - +0.8
135,939 + -0.4
135,943 - +1.1
135,996 + +0.1
136,037 + +0.2
136,038 - -1.1
136,038 - +1.7
136,079 + -0.6
136,101 + BACOVA_01483 0.10 +0.8
136,101 + BACOVA_01483 0.10 +0.4
136,121 + BACOVA_01483 0.12 +0.1
136,121 + BACOVA_01483 0.12 +1.7
136,121 + BACOVA_01483 0.12 -0.6
136,243 - BACOVA_01483 0.23 +4.5
136,253 + BACOVA_01483 0.24 +0.5

Or see this region's nucleotide sequence