Experiment: amylopectin from maize 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_01248 and BACOVA_01249 are separated by 46 nucleotides BACOVA_01249 and BACOVA_01250 are separated by 27 nucleotides BACOVA_01250 and BACOVA_01251 are separated by 86 nucleotides BACOVA_01251 and BACOVA_01252 are separated by 174 nucleotides
BACOVA_01248: BACOVA_01248 - TonB-linked outer membrane protein, SusC/RagA family, at 31,945 to 35,388
_01248
BACOVA_01249: BACOVA_01249 - hypothetical protein, at 35,435 to 35,569
_01249
BACOVA_01250: BACOVA_01250 - sigma factor regulatory protein, FecR/PupR family, at 35,597 to 36,586
_01250
BACOVA_01251: BACOVA_01251 - RNA polymerase sigma-70 factor, at 36,673 to 37,296
_01251
BACOVA_01252: BACOVA_01252 - pirin family protein, at 37,471 to 38,175
_01252
Position (kb) 35
36
37 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 34.597 kb on + strand, within BACOVA_01248 at 34.598 kb on - strand, within BACOVA_01248 at 34.650 kb on + strand, within BACOVA_01248 at 34.719 kb on + strand, within BACOVA_01248 at 34.720 kb on - strand, within BACOVA_01248 at 34.769 kb on - strand, within BACOVA_01248 at 34.785 kb on + strand, within BACOVA_01248 at 34.785 kb on + strand, within BACOVA_01248 at 34.786 kb on - strand, within BACOVA_01248 at 34.786 kb on - strand, within BACOVA_01248 at 34.786 kb on - strand, within BACOVA_01248 at 34.788 kb on + strand, within BACOVA_01248 at 34.795 kb on + strand, within BACOVA_01248 at 34.848 kb on + strand, within BACOVA_01248 at 34.848 kb on + strand, within BACOVA_01248 at 34.858 kb on - strand, within BACOVA_01248 at 34.858 kb on - strand, within BACOVA_01248 at 34.859 kb on + strand, within BACOVA_01248 at 34.859 kb on + strand, within BACOVA_01248 at 34.898 kb on - strand, within BACOVA_01248 at 34.904 kb on + strand, within BACOVA_01248 at 34.929 kb on + strand, within BACOVA_01248 at 34.947 kb on + strand, within BACOVA_01248 at 34.947 kb on + strand, within BACOVA_01248 at 34.997 kb on - strand, within BACOVA_01248 at 35.067 kb on + strand at 35.068 kb on - strand at 35.142 kb on + strand at 35.189 kb on + strand at 35.266 kb on - strand at 35.306 kb on - strand at 35.383 kb on - strand at 35.415 kb on - strand at 35.423 kb on + strand at 35.519 kb on - strand, within BACOVA_01249 at 35.519 kb on - strand, within BACOVA_01249 at 35.582 kb on + strand at 35.583 kb on - strand at 35.586 kb on + strand at 35.586 kb on + strand at 35.589 kb on + strand at 35.589 kb on + strand at 35.605 kb on + strand at 35.608 kb on - strand at 35.671 kb on + strand at 35.671 kb on + strand at 35.758 kb on + strand, within BACOVA_01250 at 35.759 kb on - strand, within BACOVA_01250 at 35.759 kb on - strand, within BACOVA_01250 at 35.794 kb on + strand, within BACOVA_01250 at 35.800 kb on + strand, within BACOVA_01250 at 35.806 kb on - strand, within BACOVA_01250 at 35.863 kb on + strand, within BACOVA_01250 at 35.866 kb on - strand, within BACOVA_01250 at 35.881 kb on + strand, within BACOVA_01250 at 35.887 kb on + strand, within BACOVA_01250 at 35.887 kb on + strand, within BACOVA_01250 at 35.887 kb on + strand, within BACOVA_01250 at 35.888 kb on - strand, within BACOVA_01250 at 35.948 kb on - strand, within BACOVA_01250 at 35.972 kb on + strand, within BACOVA_01250 at 35.973 kb on - strand, within BACOVA_01250 at 35.988 kb on + strand, within BACOVA_01250 at 35.989 kb on - strand, within BACOVA_01250 at 36.014 kb on + strand, within BACOVA_01250 at 36.015 kb on - strand, within BACOVA_01250 at 36.015 kb on - strand, within BACOVA_01250 at 36.253 kb on + strand, within BACOVA_01250 at 36.283 kb on + strand, within BACOVA_01250 at 36.291 kb on - strand, within BACOVA_01250 at 36.294 kb on - strand, within BACOVA_01250 at 36.359 kb on - strand, within BACOVA_01250 at 36.467 kb on + strand, within BACOVA_01250 at 36.467 kb on + strand, within BACOVA_01250 at 36.469 kb on + strand, within BACOVA_01250 at 36.490 kb on + strand at 36.490 kb on + strand at 36.491 kb on - strand at 36.529 kb on - strand at 36.529 kb on - strand at 36.571 kb on + strand at 36.587 kb on - strand at 36.595 kb on + strand at 36.598 kb on - strand at 36.598 kb on - strand at 36.607 kb on - strand at 36.625 kb on + strand at 36.629 kb on + strand at 36.629 kb on + strand at 36.630 kb on - strand at 36.632 kb on + strand at 36.653 kb on + strand at 36.691 kb on + strand at 36.692 kb on - strand at 36.703 kb on + strand at 36.718 kb on + strand at 36.725 kb on + strand at 36.726 kb on - strand at 36.737 kb on + strand, within BACOVA_01251 at 36.755 kb on - strand, within BACOVA_01251 at 36.768 kb on + strand, within BACOVA_01251 at 36.768 kb on + strand, within BACOVA_01251 at 36.783 kb on + strand, within BACOVA_01251 at 36.849 kb on + strand, within BACOVA_01251 at 36.875 kb on - strand, within BACOVA_01251 at 37.026 kb on + strand, within BACOVA_01251 at 37.027 kb on - strand, within BACOVA_01251 at 37.035 kb on + strand, within BACOVA_01251 at 37.036 kb on - strand, within BACOVA_01251 at 37.038 kb on + strand, within BACOVA_01251 at 37.039 kb on - strand, within BACOVA_01251 at 37.041 kb on - strand, within BACOVA_01251 at 37.097 kb on - strand, within BACOVA_01251 at 37.163 kb on + strand, within BACOVA_01251 at 37.179 kb on + strand, within BACOVA_01251 at 37.179 kb on + strand, within BACOVA_01251 at 37.191 kb on - strand, within BACOVA_01251 at 37.255 kb on + strand at 37.271 kb on + strand at 37.275 kb on + strand at 37.276 kb on - strand at 37.302 kb on + strand at 37.308 kb on + strand at 37.309 kb on - strand at 37.317 kb on - strand at 37.324 kb on + strand at 37.325 kb on - strand at 37.388 kb on + strand at 37.392 kb on + strand at 37.407 kb on - strand at 37.409 kb on + strand at 37.409 kb on + strand at 37.410 kb on - strand at 37.410 kb on - strand at 37.410 kb on - strand at 37.412 kb on + strand at 37.482 kb on - strand at 37.507 kb on + strand at 37.507 kb on + strand at 37.507 kb on + strand at 37.559 kb on - strand, within BACOVA_01252 at 37.562 kb on - strand, within BACOVA_01252
Per-strain Table
Position Strand Gene LocusTag Fraction amylopectin from maize 2.5 mg/ml (C) remove 34,597 + BACOVA_01248 0.77 -0.1 34,598 - BACOVA_01248 0.77 -0.3 34,650 + BACOVA_01248 0.79 +0.8 34,719 + BACOVA_01248 0.81 -0.8 34,720 - BACOVA_01248 0.81 +2.0 34,769 - BACOVA_01248 0.82 -0.7 34,785 + BACOVA_01248 0.82 +0.4 34,785 + BACOVA_01248 0.82 +0.1 34,786 - BACOVA_01248 0.82 +1.2 34,786 - BACOVA_01248 0.82 +1.0 34,786 - BACOVA_01248 0.82 -1.2 34,788 + BACOVA_01248 0.83 +0.6 34,795 + BACOVA_01248 0.83 +1.7 34,848 + BACOVA_01248 0.84 +0.1 34,848 + BACOVA_01248 0.84 -1.5 34,858 - BACOVA_01248 0.85 +0.2 34,858 - BACOVA_01248 0.85 +0.7 34,859 + BACOVA_01248 0.85 -2.6 34,859 + BACOVA_01248 0.85 +0.6 34,898 - BACOVA_01248 0.86 +0.1 34,904 + BACOVA_01248 0.86 +3.5 34,929 + BACOVA_01248 0.87 +0.2 34,947 + BACOVA_01248 0.87 -0.5 34,947 + BACOVA_01248 0.87 +1.2 34,997 - BACOVA_01248 0.89 -0.2 35,067 + +2.6 35,068 - -0.1 35,142 + -0.6 35,189 + -2.4 35,266 - +0.2 35,306 - -1.8 35,383 - -1.8 35,415 - +0.2 35,423 + -0.1 35,519 - BACOVA_01249 0.62 -0.4 35,519 - BACOVA_01249 0.62 -1.6 35,582 + +1.2 35,583 - +1.2 35,586 + -0.7 35,586 + -0.0 35,589 + +1.2 35,589 + +0.9 35,605 + +0.7 35,608 - -1.8 35,671 + -1.9 35,671 + +1.2 35,758 + BACOVA_01250 0.16 -0.6 35,759 - BACOVA_01250 0.16 -0.3 35,759 - BACOVA_01250 0.16 -2.6 35,794 + BACOVA_01250 0.20 +0.2 35,800 + BACOVA_01250 0.21 -0.6 35,806 - BACOVA_01250 0.21 -2.1 35,863 + BACOVA_01250 0.27 +2.7 35,866 - BACOVA_01250 0.27 -0.8 35,881 + BACOVA_01250 0.29 -1.1 35,887 + BACOVA_01250 0.29 +0.2 35,887 + BACOVA_01250 0.29 -0.4 35,887 + BACOVA_01250 0.29 +6.2 35,888 - BACOVA_01250 0.29 -0.8 35,948 - BACOVA_01250 0.35 -1.3 35,972 + BACOVA_01250 0.38 +1.1 35,973 - BACOVA_01250 0.38 -1.6 35,988 + BACOVA_01250 0.39 +0.2 35,989 - BACOVA_01250 0.40 -0.9 36,014 + BACOVA_01250 0.42 -0.9 36,015 - BACOVA_01250 0.42 -0.8 36,015 - BACOVA_01250 0.42 -2.8 36,253 + BACOVA_01250 0.66 -0.1 36,283 + BACOVA_01250 0.69 +2.5 36,291 - BACOVA_01250 0.70 +2.2 36,294 - BACOVA_01250 0.70 -3.4 36,359 - BACOVA_01250 0.77 -1.6 36,467 + BACOVA_01250 0.88 +1.0 36,467 + BACOVA_01250 0.88 -2.2 36,469 + BACOVA_01250 0.88 -1.8 36,490 + +1.2 36,490 + +0.7 36,491 - -2.0 36,529 - -0.6 36,529 - +0.2 36,571 + +1.9 36,587 - -0.3 36,595 + -2.2 36,598 - -1.1 36,598 - -0.6 36,607 - -1.2 36,625 + -2.5 36,629 + -1.2 36,629 + +0.1 36,630 - -1.2 36,632 + -0.3 36,653 + +1.9 36,691 + +1.2 36,692 - -0.8 36,703 + -0.2 36,718 + +1.8 36,725 + -1.3 36,726 - -2.3 36,737 + BACOVA_01251 0.10 +0.1 36,755 - BACOVA_01251 0.13 -1.3 36,768 + BACOVA_01251 0.15 -2.5 36,768 + BACOVA_01251 0.15 -0.7 36,783 + BACOVA_01251 0.18 -1.1 36,849 + BACOVA_01251 0.28 -0.2 36,875 - BACOVA_01251 0.32 +1.6 37,026 + BACOVA_01251 0.57 +1.2 37,027 - BACOVA_01251 0.57 -0.3 37,035 + BACOVA_01251 0.58 -0.5 37,036 - BACOVA_01251 0.58 +0.4 37,038 + BACOVA_01251 0.58 +0.1 37,039 - BACOVA_01251 0.59 -2.7 37,041 - BACOVA_01251 0.59 -0.7 37,097 - BACOVA_01251 0.68 +5.6 37,163 + BACOVA_01251 0.79 +0.1 37,179 + BACOVA_01251 0.81 -0.3 37,179 + BACOVA_01251 0.81 -0.9 37,191 - BACOVA_01251 0.83 +0.0 37,255 + -1.7 37,271 + -1.6 37,275 + -1.8 37,276 - -0.3 37,302 + +1.2 37,308 + -0.6 37,309 - -0.1 37,317 - +0.8 37,324 + -0.8 37,325 - +1.0 37,388 + -0.2 37,392 + -2.1 37,407 - +1.2 37,409 + -1.2 37,409 + +2.2 37,410 - +1.5 37,410 - -2.1 37,410 - +1.2 37,412 + -0.8 37,482 - -0.6 37,507 + -0.5 37,507 + -1.1 37,507 + -2.0 37,559 - BACOVA_01252 0.12 -1.3 37,562 - BACOVA_01252 0.13 -1.2
Or see this region's nucleotide sequence