Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_01164

Experiment: amylopectin from maize 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_01163 and BACOVA_01164 are separated by 38 nucleotidesBACOVA_01164 and BACOVA_01165 overlap by 8 nucleotides BACOVA_01163: BACOVA_01163 - tetratricopeptide repeat protein, at 117,981 to 118,943 _01163 BACOVA_01164: BACOVA_01164 - ATP-dependent DNA helicase, RecQ family, at 118,982 to 120,892 _01164 BACOVA_01165: BACOVA_01165 - single-stranded-DNA-specific exonuclease RecJ, at 120,885 to 122,651 _01165 Position (kb) 118 119 120 121Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 117.982 kb on + strandat 117.983 kb on - strandat 118.141 kb on + strand, within BACOVA_01163at 118.220 kb on + strand, within BACOVA_01163at 118.222 kb on + strand, within BACOVA_01163at 118.238 kb on - strand, within BACOVA_01163at 118.238 kb on - strand, within BACOVA_01163at 118.238 kb on - strand, within BACOVA_01163at 118.238 kb on - strand, within BACOVA_01163at 118.243 kb on + strand, within BACOVA_01163at 118.386 kb on + strand, within BACOVA_01163at 118.386 kb on + strand, within BACOVA_01163at 118.386 kb on + strand, within BACOVA_01163at 118.387 kb on - strand, within BACOVA_01163at 118.387 kb on - strand, within BACOVA_01163at 118.389 kb on - strand, within BACOVA_01163at 118.400 kb on + strand, within BACOVA_01163at 118.406 kb on + strand, within BACOVA_01163at 118.406 kb on + strand, within BACOVA_01163at 118.407 kb on - strand, within BACOVA_01163at 118.409 kb on - strand, within BACOVA_01163at 118.409 kb on - strand, within BACOVA_01163at 118.443 kb on + strand, within BACOVA_01163at 118.547 kb on - strand, within BACOVA_01163at 118.604 kb on + strand, within BACOVA_01163at 118.605 kb on - strand, within BACOVA_01163at 118.632 kb on + strand, within BACOVA_01163at 118.632 kb on + strand, within BACOVA_01163at 118.633 kb on - strand, within BACOVA_01163at 118.677 kb on - strand, within BACOVA_01163at 118.732 kb on + strand, within BACOVA_01163at 118.732 kb on + strand, within BACOVA_01163at 118.733 kb on - strand, within BACOVA_01163at 118.733 kb on - strand, within BACOVA_01163at 118.801 kb on - strand, within BACOVA_01163at 118.808 kb on - strand, within BACOVA_01163at 118.847 kb on - strandat 118.963 kb on - strandat 118.978 kb on + strandat 118.978 kb on + strandat 118.994 kb on - strandat 118.998 kb on - strandat 118.998 kb on - strandat 119.037 kb on - strandat 119.041 kb on - strandat 119.079 kb on - strandat 119.079 kb on - strandat 119.091 kb on - strandat 120.883 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction amylopectin from maize 2.5 mg/ml (C)
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117,982 + -0.3
117,983 - -1.1
118,141 + BACOVA_01163 0.17 -0.0
118,220 + BACOVA_01163 0.25 +0.7
118,222 + BACOVA_01163 0.25 -0.1
118,238 - BACOVA_01163 0.27 +0.6
118,238 - BACOVA_01163 0.27 +0.7
118,238 - BACOVA_01163 0.27 -0.0
118,238 - BACOVA_01163 0.27 -0.3
118,243 + BACOVA_01163 0.27 +0.6
118,386 + BACOVA_01163 0.42 -1.9
118,386 + BACOVA_01163 0.42 -1.7
118,386 + BACOVA_01163 0.42 -0.6
118,387 - BACOVA_01163 0.42 -0.5
118,387 - BACOVA_01163 0.42 -0.5
118,389 - BACOVA_01163 0.42 -0.3
118,400 + BACOVA_01163 0.44 -3.0
118,406 + BACOVA_01163 0.44 -0.3
118,406 + BACOVA_01163 0.44 -2.0
118,407 - BACOVA_01163 0.44 -1.3
118,409 - BACOVA_01163 0.44 -2.6
118,409 - BACOVA_01163 0.44 +1.7
118,443 + BACOVA_01163 0.48 -1.5
118,547 - BACOVA_01163 0.59 -2.0
118,604 + BACOVA_01163 0.65 -1.4
118,605 - BACOVA_01163 0.65 -1.0
118,632 + BACOVA_01163 0.68 -0.7
118,632 + BACOVA_01163 0.68 +0.7
118,633 - BACOVA_01163 0.68 -1.0
118,677 - BACOVA_01163 0.72 -1.0
118,732 + BACOVA_01163 0.78 -2.1
118,732 + BACOVA_01163 0.78 -0.3
118,733 - BACOVA_01163 0.78 +3.5
118,733 - BACOVA_01163 0.78 -1.4
118,801 - BACOVA_01163 0.85 -0.5
118,808 - BACOVA_01163 0.86 +0.5
118,847 - -2.2
118,963 - -0.4
118,978 + -0.5
118,978 + -0.7
118,994 - +0.8
118,998 - -1.1
118,998 - -0.2
119,037 - +0.7
119,041 - -0.8
119,079 - +0.3
119,079 - -0.1
119,091 - -0.5
120,883 - +1.3

Or see this region's nucleotide sequence