Experiment: amylopectin from maize 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_00864 and BACOVA_00865 are separated by 132 nucleotides BACOVA_00865 and BACOVA_00866 are separated by 14 nucleotides
BACOVA_00864: BACOVA_00864 - transporter, major facilitator family protein, at 117,100 to 118,305
_00864
BACOVA_00865: BACOVA_00865 - SusD family protein, at 118,438 to 119,919
_00865
BACOVA_00866: BACOVA_00866 - TonB-linked outer membrane protein, SusC/RagA family, at 119,934 to 123,062
_00866
Position (kb) 118
119
120 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 117.557 kb on + strand, within BACOVA_00864 at 117.557 kb on + strand, within BACOVA_00864 at 117.558 kb on - strand, within BACOVA_00864 at 117.578 kb on + strand, within BACOVA_00864 at 117.614 kb on + strand, within BACOVA_00864 at 117.615 kb on - strand, within BACOVA_00864 at 117.615 kb on - strand, within BACOVA_00864 at 117.632 kb on + strand, within BACOVA_00864 at 117.653 kb on - strand, within BACOVA_00864 at 117.671 kb on - strand, within BACOVA_00864 at 117.671 kb on - strand, within BACOVA_00864 at 117.672 kb on + strand, within BACOVA_00864 at 117.742 kb on - strand, within BACOVA_00864 at 117.798 kb on + strand, within BACOVA_00864 at 117.798 kb on + strand, within BACOVA_00864 at 117.799 kb on - strand, within BACOVA_00864 at 117.799 kb on - strand, within BACOVA_00864 at 117.802 kb on + strand, within BACOVA_00864 at 117.802 kb on + strand, within BACOVA_00864 at 117.823 kb on + strand, within BACOVA_00864 at 117.828 kb on + strand, within BACOVA_00864 at 117.829 kb on - strand, within BACOVA_00864 at 117.835 kb on + strand, within BACOVA_00864 at 117.857 kb on + strand, within BACOVA_00864 at 117.864 kb on - strand, within BACOVA_00864 at 117.880 kb on + strand, within BACOVA_00864 at 117.884 kb on + strand, within BACOVA_00864 at 117.885 kb on - strand, within BACOVA_00864 at 117.888 kb on + strand, within BACOVA_00864 at 117.903 kb on + strand, within BACOVA_00864 at 117.903 kb on + strand, within BACOVA_00864 at 117.903 kb on + strand, within BACOVA_00864 at 117.980 kb on + strand, within BACOVA_00864 at 118.004 kb on + strand, within BACOVA_00864 at 118.018 kb on - strand, within BACOVA_00864 at 118.018 kb on - strand, within BACOVA_00864 at 118.032 kb on + strand, within BACOVA_00864 at 118.032 kb on + strand, within BACOVA_00864 at 118.033 kb on - strand, within BACOVA_00864 at 118.035 kb on + strand, within BACOVA_00864 at 118.035 kb on + strand, within BACOVA_00864 at 118.041 kb on + strand, within BACOVA_00864 at 118.086 kb on - strand, within BACOVA_00864 at 118.094 kb on - strand, within BACOVA_00864 at 118.130 kb on + strand, within BACOVA_00864 at 118.131 kb on - strand, within BACOVA_00864 at 118.173 kb on - strand, within BACOVA_00864 at 118.219 kb on + strand at 118.219 kb on + strand at 118.219 kb on + strand at 118.223 kb on + strand at 118.223 kb on + strand at 118.224 kb on - strand at 118.224 kb on - strand at 118.224 kb on - strand at 118.226 kb on - strand at 118.226 kb on - strand at 118.228 kb on - strand at 118.228 kb on - strand at 118.228 kb on - strand at 118.230 kb on + strand at 118.231 kb on - strand at 118.241 kb on - strand at 118.241 kb on - strand at 118.241 kb on - strand at 118.241 kb on - strand at 118.254 kb on - strand at 118.319 kb on - strand at 118.319 kb on - strand at 118.325 kb on - strand at 118.372 kb on + strand at 118.373 kb on - strand at 118.389 kb on + strand at 118.406 kb on + strand at 118.406 kb on + strand at 118.407 kb on - strand at 118.435 kb on + strand at 118.435 kb on + strand at 118.439 kb on + strand at 118.439 kb on + strand at 118.442 kb on - strand at 118.442 kb on - strand at 118.446 kb on + strand at 118.481 kb on + strand at 118.482 kb on - strand at 118.482 kb on - strand at 118.482 kb on - strand at 118.483 kb on + strand at 118.484 kb on - strand at 118.484 kb on - strand at 118.484 kb on - strand at 118.490 kb on + strand at 118.531 kb on - strand at 118.569 kb on + strand at 118.570 kb on - strand at 118.570 kb on - strand at 118.633 kb on + strand, within BACOVA_00865 at 118.654 kb on + strand, within BACOVA_00865 at 118.655 kb on - strand, within BACOVA_00865 at 118.663 kb on - strand, within BACOVA_00865 at 118.774 kb on - strand, within BACOVA_00865 at 118.774 kb on - strand, within BACOVA_00865 at 118.782 kb on + strand, within BACOVA_00865 at 118.796 kb on - strand, within BACOVA_00865 at 118.850 kb on + strand, within BACOVA_00865 at 118.851 kb on - strand, within BACOVA_00865 at 118.887 kb on + strand, within BACOVA_00865 at 118.914 kb on + strand, within BACOVA_00865 at 118.954 kb on + strand, within BACOVA_00865 at 118.981 kb on - strand, within BACOVA_00865 at 119.005 kb on - strand, within BACOVA_00865 at 119.015 kb on + strand, within BACOVA_00865 at 119.015 kb on + strand, within BACOVA_00865 at 119.027 kb on + strand, within BACOVA_00865 at 119.027 kb on + strand, within BACOVA_00865 at 119.043 kb on - strand, within BACOVA_00865 at 119.055 kb on - strand, within BACOVA_00865 at 119.055 kb on - strand, within BACOVA_00865 at 119.055 kb on - strand, within BACOVA_00865 at 119.133 kb on - strand, within BACOVA_00865 at 119.143 kb on - strand, within BACOVA_00865 at 119.157 kb on + strand, within BACOVA_00865 at 119.157 kb on + strand, within BACOVA_00865 at 119.158 kb on - strand, within BACOVA_00865 at 119.219 kb on + strand, within BACOVA_00865 at 119.220 kb on - strand, within BACOVA_00865 at 119.303 kb on + strand, within BACOVA_00865 at 119.304 kb on - strand, within BACOVA_00865 at 119.374 kb on + strand, within BACOVA_00865 at 119.385 kb on + strand, within BACOVA_00865 at 119.386 kb on - strand, within BACOVA_00865 at 119.391 kb on + strand, within BACOVA_00865 at 119.391 kb on + strand, within BACOVA_00865 at 119.401 kb on - strand, within BACOVA_00865 at 119.403 kb on + strand, within BACOVA_00865 at 119.404 kb on + strand, within BACOVA_00865 at 119.404 kb on + strand, within BACOVA_00865 at 119.404 kb on + strand, within BACOVA_00865 at 119.405 kb on - strand, within BACOVA_00865 at 119.405 kb on - strand, within BACOVA_00865 at 119.407 kb on - strand, within BACOVA_00865 at 119.450 kb on + strand, within BACOVA_00865 at 119.471 kb on + strand, within BACOVA_00865 at 119.486 kb on - strand, within BACOVA_00865 at 119.554 kb on - strand, within BACOVA_00865 at 119.559 kb on + strand, within BACOVA_00865 at 119.560 kb on - strand, within BACOVA_00865 at 119.564 kb on - strand, within BACOVA_00865 at 119.574 kb on - strand, within BACOVA_00865 at 119.576 kb on - strand, within BACOVA_00865 at 119.576 kb on - strand, within BACOVA_00865 at 119.583 kb on - strand, within BACOVA_00865 at 119.621 kb on - strand, within BACOVA_00865 at 119.622 kb on + strand, within BACOVA_00865 at 119.622 kb on + strand, within BACOVA_00865 at 119.629 kb on - strand, within BACOVA_00865 at 119.629 kb on - strand, within BACOVA_00865 at 119.647 kb on - strand, within BACOVA_00865 at 119.688 kb on + strand, within BACOVA_00865 at 119.688 kb on + strand, within BACOVA_00865 at 119.688 kb on + strand, within BACOVA_00865 at 119.688 kb on + strand, within BACOVA_00865 at 119.689 kb on - strand, within BACOVA_00865 at 119.727 kb on + strand, within BACOVA_00865 at 119.730 kb on - strand, within BACOVA_00865 at 119.733 kb on + strand, within BACOVA_00865 at 119.742 kb on - strand, within BACOVA_00865 at 119.756 kb on + strand, within BACOVA_00865 at 119.800 kb on + strand at 119.801 kb on - strand at 119.815 kb on + strand at 119.815 kb on + strand at 119.816 kb on - strand at 119.924 kb on + strand at 119.924 kb on + strand at 119.925 kb on - strand at 119.925 kb on - strand at 119.935 kb on + strand at 119.996 kb on + strand at 120.003 kb on - strand at 120.021 kb on + strand at 120.021 kb on - strand at 120.045 kb on - strand at 120.053 kb on + strand at 120.063 kb on + strand at 120.064 kb on - strand at 120.064 kb on - strand at 120.068 kb on - strand at 120.069 kb on + strand at 120.069 kb on + strand at 120.070 kb on - strand at 120.096 kb on - strand at 120.096 kb on - strand at 120.119 kb on + strand at 120.120 kb on - strand at 120.120 kb on - strand at 120.159 kb on - strand at 120.195 kb on - strand at 120.203 kb on + strand at 120.203 kb on + strand at 120.203 kb on + strand at 120.203 kb on + strand at 120.204 kb on - strand at 120.204 kb on - strand at 120.311 kb on + strand, within BACOVA_00866 at 120.325 kb on + strand, within BACOVA_00866 at 120.326 kb on - strand, within BACOVA_00866 at 120.329 kb on + strand, within BACOVA_00866 at 120.330 kb on - strand, within BACOVA_00866 at 120.436 kb on + strand, within BACOVA_00866 at 120.436 kb on + strand, within BACOVA_00866 at 120.443 kb on - strand, within BACOVA_00866 at 120.458 kb on - strand, within BACOVA_00866 at 120.495 kb on - strand, within BACOVA_00866 at 120.515 kb on + strand, within BACOVA_00866 at 120.516 kb on - strand, within BACOVA_00866 at 120.516 kb on - strand, within BACOVA_00866 at 120.546 kb on + strand, within BACOVA_00866 at 120.547 kb on - strand, within BACOVA_00866 at 120.562 kb on - strand, within BACOVA_00866 at 120.562 kb on - strand, within BACOVA_00866 at 120.562 kb on - strand, within BACOVA_00866 at 120.566 kb on + strand, within BACOVA_00866 at 120.568 kb on + strand, within BACOVA_00866 at 120.568 kb on + strand, within BACOVA_00866 at 120.577 kb on + strand, within BACOVA_00866 at 120.591 kb on + strand, within BACOVA_00866 at 120.591 kb on + strand, within BACOVA_00866 at 120.592 kb on - strand, within BACOVA_00866 at 120.650 kb on + strand, within BACOVA_00866 at 120.651 kb on - strand, within BACOVA_00866 at 120.651 kb on - strand, within BACOVA_00866 at 120.656 kb on + strand, within BACOVA_00866 at 120.732 kb on + strand, within BACOVA_00866 at 120.733 kb on - strand, within BACOVA_00866 at 120.733 kb on - strand, within BACOVA_00866 at 120.741 kb on - strand, within BACOVA_00866 at 120.771 kb on - strand, within BACOVA_00866 at 120.863 kb on + strand, within BACOVA_00866
Per-strain Table
Position Strand Gene LocusTag Fraction amylopectin from maize 2.5 mg/ml (C) remove 117,557 + BACOVA_00864 0.38 +0.2 117,557 + BACOVA_00864 0.38 +1.8 117,558 - BACOVA_00864 0.38 +2.4 117,578 + BACOVA_00864 0.40 +0.7 117,614 + BACOVA_00864 0.43 -0.7 117,615 - BACOVA_00864 0.43 -0.3 117,615 - BACOVA_00864 0.43 -1.1 117,632 + BACOVA_00864 0.44 +0.5 117,653 - BACOVA_00864 0.46 -1.9 117,671 - BACOVA_00864 0.47 -0.6 117,671 - BACOVA_00864 0.47 -0.1 117,672 + BACOVA_00864 0.47 -0.4 117,742 - BACOVA_00864 0.53 +0.4 117,798 + BACOVA_00864 0.58 +0.0 117,798 + BACOVA_00864 0.58 -1.1 117,799 - BACOVA_00864 0.58 +2.0 117,799 - BACOVA_00864 0.58 -1.3 117,802 + BACOVA_00864 0.58 +0.2 117,802 + BACOVA_00864 0.58 +0.2 117,823 + BACOVA_00864 0.60 -0.6 117,828 + BACOVA_00864 0.60 -1.5 117,829 - BACOVA_00864 0.60 -3.0 117,835 + BACOVA_00864 0.61 -2.2 117,857 + BACOVA_00864 0.63 -1.1 117,864 - BACOVA_00864 0.63 +1.4 117,880 + BACOVA_00864 0.65 -0.1 117,884 + BACOVA_00864 0.65 -0.9 117,885 - BACOVA_00864 0.65 +1.2 117,888 + BACOVA_00864 0.65 -2.3 117,903 + BACOVA_00864 0.67 -1.2 117,903 + BACOVA_00864 0.67 -0.6 117,903 + BACOVA_00864 0.67 +0.2 117,980 + BACOVA_00864 0.73 -2.0 118,004 + BACOVA_00864 0.75 +2.2 118,018 - BACOVA_00864 0.76 +2.9 118,018 - BACOVA_00864 0.76 -0.5 118,032 + BACOVA_00864 0.77 -0.6 118,032 + BACOVA_00864 0.77 -0.9 118,033 - BACOVA_00864 0.77 +0.7 118,035 + BACOVA_00864 0.78 +0.0 118,035 + BACOVA_00864 0.78 +0.0 118,041 + BACOVA_00864 0.78 +2.4 118,086 - BACOVA_00864 0.82 -0.6 118,094 - BACOVA_00864 0.82 -1.2 118,130 + BACOVA_00864 0.85 -0.3 118,131 - BACOVA_00864 0.85 -1.3 118,173 - BACOVA_00864 0.89 +1.0 118,219 + -0.1 118,219 + +1.4 118,219 + -2.3 118,223 + +0.7 118,223 + +0.8 118,224 - -0.9 118,224 - +0.2 118,224 - +0.1 118,226 - +0.5 118,226 - -0.6 118,228 - -0.5 118,228 - +0.2 118,228 - -0.3 118,230 + +0.1 118,231 - -2.1 118,241 - +1.7 118,241 - +0.9 118,241 - +0.1 118,241 - +0.0 118,254 - -1.5 118,319 - -1.2 118,319 - -1.1 118,325 - -1.4 118,372 + +1.7 118,373 - +0.1 118,389 + -2.2 118,406 + +1.6 118,406 + -0.8 118,407 - +2.2 118,435 + -1.5 118,435 + -0.8 118,439 + -2.1 118,439 + -0.2 118,442 - -0.1 118,442 - +0.1 118,446 + +0.7 118,481 + +0.2 118,482 - -1.2 118,482 - -1.3 118,482 - -1.6 118,483 + +0.9 118,484 - -0.8 118,484 - -1.2 118,484 - +0.9 118,490 + -1.5 118,531 - +0.9 118,569 + -0.1 118,570 - +0.2 118,570 - -0.6 118,633 + BACOVA_00865 0.13 -1.1 118,654 + BACOVA_00865 0.15 +0.1 118,655 - BACOVA_00865 0.15 -1.5 118,663 - BACOVA_00865 0.15 +0.2 118,774 - BACOVA_00865 0.23 +0.2 118,774 - BACOVA_00865 0.23 -0.7 118,782 + BACOVA_00865 0.23 -1.2 118,796 - BACOVA_00865 0.24 -0.2 118,850 + BACOVA_00865 0.28 +0.1 118,851 - BACOVA_00865 0.28 -1.6 118,887 + BACOVA_00865 0.30 -0.7 118,914 + BACOVA_00865 0.32 -0.1 118,954 + BACOVA_00865 0.35 -0.6 118,981 - BACOVA_00865 0.37 +1.6 119,005 - BACOVA_00865 0.38 -0.6 119,015 + BACOVA_00865 0.39 +0.1 119,015 + BACOVA_00865 0.39 -0.1 119,027 + BACOVA_00865 0.40 -0.6 119,027 + BACOVA_00865 0.40 +0.7 119,043 - BACOVA_00865 0.41 -1.5 119,055 - BACOVA_00865 0.42 -0.9 119,055 - BACOVA_00865 0.42 -0.4 119,055 - BACOVA_00865 0.42 +0.8 119,133 - BACOVA_00865 0.47 +0.4 119,143 - BACOVA_00865 0.48 +0.1 119,157 + BACOVA_00865 0.49 +0.1 119,157 + BACOVA_00865 0.49 +0.2 119,158 - BACOVA_00865 0.49 -1.0 119,219 + BACOVA_00865 0.53 -1.7 119,220 - BACOVA_00865 0.53 -0.4 119,303 + BACOVA_00865 0.58 -0.0 119,304 - BACOVA_00865 0.58 +0.3 119,374 + BACOVA_00865 0.63 +0.7 119,385 + BACOVA_00865 0.64 -0.9 119,386 - BACOVA_00865 0.64 -2.0 119,391 + BACOVA_00865 0.64 +0.1 119,391 + BACOVA_00865 0.64 -0.6 119,401 - BACOVA_00865 0.65 -0.9 119,403 + BACOVA_00865 0.65 +1.7 119,404 + BACOVA_00865 0.65 +0.7 119,404 + BACOVA_00865 0.65 -1.5 119,404 + BACOVA_00865 0.65 +1.8 119,405 - BACOVA_00865 0.65 +0.4 119,405 - BACOVA_00865 0.65 +1.2 119,407 - BACOVA_00865 0.65 -0.2 119,450 + BACOVA_00865 0.68 +1.4 119,471 + BACOVA_00865 0.70 +0.7 119,486 - BACOVA_00865 0.71 -0.2 119,554 - BACOVA_00865 0.75 +0.6 119,559 + BACOVA_00865 0.76 +0.4 119,560 - BACOVA_00865 0.76 -0.7 119,564 - BACOVA_00865 0.76 +0.9 119,574 - BACOVA_00865 0.77 +0.8 119,576 - BACOVA_00865 0.77 +2.2 119,576 - BACOVA_00865 0.77 -1.2 119,583 - BACOVA_00865 0.77 +1.0 119,621 - BACOVA_00865 0.80 -0.7 119,622 + BACOVA_00865 0.80 +1.7 119,622 + BACOVA_00865 0.80 +0.5 119,629 - BACOVA_00865 0.80 +0.2 119,629 - BACOVA_00865 0.80 -0.9 119,647 - BACOVA_00865 0.82 +4.6 119,688 + BACOVA_00865 0.84 +1.2 119,688 + BACOVA_00865 0.84 +0.2 119,688 + BACOVA_00865 0.84 +1.2 119,688 + BACOVA_00865 0.84 -0.6 119,689 - BACOVA_00865 0.84 -1.1 119,727 + BACOVA_00865 0.87 +2.1 119,730 - BACOVA_00865 0.87 +1.2 119,733 + BACOVA_00865 0.87 -0.6 119,742 - BACOVA_00865 0.88 +2.2 119,756 + BACOVA_00865 0.89 +0.7 119,800 + +3.1 119,801 - -0.1 119,815 + -0.3 119,815 + +0.1 119,816 - +0.4 119,924 + -0.4 119,924 + -0.8 119,925 - +1.2 119,925 - -2.1 119,935 + -0.9 119,996 + +1.7 120,003 - -0.1 120,021 + -1.2 120,021 - -1.2 120,045 - -0.6 120,053 + +1.2 120,063 + -0.5 120,064 - -0.9 120,064 - -1.9 120,068 - -1.6 120,069 + -1.5 120,069 + +2.2 120,070 - +0.0 120,096 - +0.2 120,096 - +0.3 120,119 + +4.7 120,120 - -1.9 120,120 - -0.7 120,159 - -0.3 120,195 - +1.6 120,203 + -1.8 120,203 + +0.8 120,203 + +2.2 120,203 + -0.6 120,204 - -1.6 120,204 - -1.9 120,311 + BACOVA_00866 0.12 +0.9 120,325 + BACOVA_00866 0.12 -0.6 120,326 - BACOVA_00866 0.13 +0.9 120,329 + BACOVA_00866 0.13 -0.8 120,330 - BACOVA_00866 0.13 -1.3 120,436 + BACOVA_00866 0.16 +1.9 120,436 + BACOVA_00866 0.16 +1.5 120,443 - BACOVA_00866 0.16 -0.2 120,458 - BACOVA_00866 0.17 +1.5 120,495 - BACOVA_00866 0.18 -0.9 120,515 + BACOVA_00866 0.19 -0.9 120,516 - BACOVA_00866 0.19 +0.7 120,516 - BACOVA_00866 0.19 -0.6 120,546 + BACOVA_00866 0.20 +2.1 120,547 - BACOVA_00866 0.20 -1.1 120,562 - BACOVA_00866 0.20 +2.2 120,562 - BACOVA_00866 0.20 +0.2 120,562 - BACOVA_00866 0.20 +2.5 120,566 + BACOVA_00866 0.20 -0.8 120,568 + BACOVA_00866 0.20 +1.3 120,568 + BACOVA_00866 0.20 +0.7 120,577 + BACOVA_00866 0.21 -0.2 120,591 + BACOVA_00866 0.21 -0.9 120,591 + BACOVA_00866 0.21 +0.2 120,592 - BACOVA_00866 0.21 -0.2 120,650 + BACOVA_00866 0.23 +0.4 120,651 - BACOVA_00866 0.23 +1.2 120,651 - BACOVA_00866 0.23 -1.3 120,656 + BACOVA_00866 0.23 +0.3 120,732 + BACOVA_00866 0.26 +0.2 120,733 - BACOVA_00866 0.26 -1.6 120,733 - BACOVA_00866 0.26 +0.5 120,741 - BACOVA_00866 0.26 +1.8 120,771 - BACOVA_00866 0.27 -2.4 120,863 + BACOVA_00866 0.30 +0.7
Or see this region's nucleotide sequence