Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_00832

Experiment: amylopectin from maize 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_00830 and BACOVA_00831 are separated by 39 nucleotidesBACOVA_00831 and BACOVA_00832 are separated by 162 nucleotidesBACOVA_00832 and BACOVA_00833 overlap by 4 nucleotides BACOVA_00830: BACOVA_00830 - nitrite reductase, at 81,068 to 82,549 _00830 BACOVA_00831: BACOVA_00831 - cytochrome c nitrate reductase, small subunit, at 82,589 to 83,188 _00831 BACOVA_00832: BACOVA_00832 - hypothetical protein, at 83,351 to 83,842 _00832 BACOVA_00833: BACOVA_00833 - TonB-dependent receptor, at 83,839 to 85,998 _00833 Position (kb) 83 84Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 82.351 kb on - strand, within BACOVA_00830at 82.373 kb on - strand, within BACOVA_00830at 82.488 kb on - strandat 82.488 kb on - strandat 82.552 kb on + strandat 82.552 kb on + strandat 82.552 kb on + strandat 82.553 kb on - strandat 82.553 kb on - strandat 82.571 kb on + strandat 82.572 kb on - strandat 82.574 kb on + strandat 82.575 kb on - strandat 82.594 kb on + strandat 82.739 kb on + strand, within BACOVA_00831at 82.753 kb on + strand, within BACOVA_00831at 82.754 kb on - strand, within BACOVA_00831at 82.754 kb on - strand, within BACOVA_00831at 82.754 kb on - strand, within BACOVA_00831at 82.755 kb on + strand, within BACOVA_00831at 82.787 kb on - strand, within BACOVA_00831at 82.798 kb on + strand, within BACOVA_00831at 82.822 kb on + strand, within BACOVA_00831at 82.823 kb on - strand, within BACOVA_00831at 82.877 kb on - strand, within BACOVA_00831at 82.900 kb on + strand, within BACOVA_00831at 82.915 kb on + strand, within BACOVA_00831at 82.990 kb on + strand, within BACOVA_00831at 83.008 kb on - strand, within BACOVA_00831at 83.008 kb on - strand, within BACOVA_00831at 83.008 kb on - strand, within BACOVA_00831at 83.011 kb on - strand, within BACOVA_00831at 83.062 kb on - strand, within BACOVA_00831at 83.065 kb on + strand, within BACOVA_00831at 83.066 kb on - strand, within BACOVA_00831at 83.066 kb on - strand, within BACOVA_00831at 83.066 kb on - strand, within BACOVA_00831at 83.066 kb on - strand, within BACOVA_00831at 83.080 kb on + strand, within BACOVA_00831at 83.081 kb on - strand, within BACOVA_00831at 83.082 kb on + strand, within BACOVA_00831at 83.083 kb on - strand, within BACOVA_00831at 83.083 kb on - strand, within BACOVA_00831at 83.083 kb on - strand, within BACOVA_00831at 83.083 kb on - strand, within BACOVA_00831at 83.086 kb on + strand, within BACOVA_00831at 83.087 kb on - strand, within BACOVA_00831at 83.087 kb on - strand, within BACOVA_00831at 83.087 kb on - strand, within BACOVA_00831at 83.087 kb on - strand, within BACOVA_00831at 83.146 kb on + strandat 83.148 kb on + strandat 83.189 kb on - strandat 83.213 kb on + strandat 83.241 kb on + strandat 83.241 kb on + strandat 83.242 kb on - strandat 83.242 kb on - strandat 83.242 kb on - strandat 83.246 kb on - strandat 83.276 kb on + strandat 83.281 kb on - strandat 83.344 kb on + strandat 83.352 kb on + strandat 83.389 kb on + strandat 83.416 kb on - strand, within BACOVA_00832at 83.489 kb on + strand, within BACOVA_00832at 83.489 kb on + strand, within BACOVA_00832at 83.490 kb on - strand, within BACOVA_00832at 83.490 kb on - strand, within BACOVA_00832at 83.509 kb on + strand, within BACOVA_00832at 83.510 kb on - strand, within BACOVA_00832at 83.510 kb on - strand, within BACOVA_00832at 83.510 kb on - strand, within BACOVA_00832at 83.538 kb on + strand, within BACOVA_00832at 83.538 kb on + strand, within BACOVA_00832at 83.539 kb on - strand, within BACOVA_00832at 83.539 kb on - strand, within BACOVA_00832at 83.585 kb on - strand, within BACOVA_00832at 83.588 kb on - strand, within BACOVA_00832at 83.617 kb on + strand, within BACOVA_00832at 83.618 kb on - strand, within BACOVA_00832at 83.618 kb on - strand, within BACOVA_00832at 83.794 kb on + strandat 83.795 kb on - strandat 83.795 kb on - strandat 83.873 kb on - strandat 83.886 kb on + strandat 83.886 kb on + strandat 83.887 kb on - strandat 83.937 kb on - strandat 83.954 kb on - strandat 83.954 kb on - strandat 84.006 kb on + strandat 84.073 kb on - strand, within BACOVA_00833at 84.111 kb on + strand, within BACOVA_00833at 84.111 kb on + strand, within BACOVA_00833at 84.112 kb on - strand, within BACOVA_00833at 84.112 kb on - strand, within BACOVA_00833at 84.133 kb on + strand, within BACOVA_00833at 84.134 kb on - strand, within BACOVA_00833at 84.138 kb on + strand, within BACOVA_00833at 84.138 kb on + strand, within BACOVA_00833at 84.139 kb on - strand, within BACOVA_00833at 84.194 kb on + strand, within BACOVA_00833at 84.200 kb on + strand, within BACOVA_00833at 84.201 kb on - strand, within BACOVA_00833at 84.207 kb on - strand, within BACOVA_00833at 84.253 kb on + strand, within BACOVA_00833at 84.253 kb on + strand, within BACOVA_00833at 84.254 kb on - strand, within BACOVA_00833at 84.259 kb on - strand, within BACOVA_00833at 84.277 kb on + strand, within BACOVA_00833at 84.277 kb on + strand, within BACOVA_00833at 84.296 kb on + strand, within BACOVA_00833at 84.302 kb on + strand, within BACOVA_00833at 84.422 kb on + strand, within BACOVA_00833at 84.423 kb on - strand, within BACOVA_00833at 84.499 kb on + strand, within BACOVA_00833at 84.500 kb on - strand, within BACOVA_00833at 84.563 kb on - strand, within BACOVA_00833at 84.620 kb on + strand, within BACOVA_00833at 84.707 kb on + strand, within BACOVA_00833at 84.708 kb on - strand, within BACOVA_00833at 84.708 kb on - strand, within BACOVA_00833at 84.712 kb on - strand, within BACOVA_00833at 84.730 kb on - strand, within BACOVA_00833at 84.735 kb on + strand, within BACOVA_00833at 84.750 kb on - strand, within BACOVA_00833at 84.791 kb on + strand, within BACOVA_00833at 84.791 kb on + strand, within BACOVA_00833at 84.791 kb on + strand, within BACOVA_00833

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Per-strain Table

Position Strand Gene LocusTag Fraction amylopectin from maize 2.5 mg/ml (C)
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82,351 - BACOVA_00830 0.87 +0.5
82,373 - BACOVA_00830 0.88 -1.6
82,488 - +1.2
82,488 - +0.1
82,552 + +2.4
82,552 + +1.2
82,552 + -0.3
82,553 - -0.8
82,553 - -1.5
82,571 + +1.8
82,572 - +0.5
82,574 + -1.4
82,575 - +0.5
82,594 + -0.1
82,739 + BACOVA_00831 0.25 +0.7
82,753 + BACOVA_00831 0.27 -0.2
82,754 - BACOVA_00831 0.28 +1.2
82,754 - BACOVA_00831 0.28 +0.2
82,754 - BACOVA_00831 0.28 +0.7
82,755 + BACOVA_00831 0.28 +1.4
82,787 - BACOVA_00831 0.33 +6.0
82,798 + BACOVA_00831 0.35 +0.5
82,822 + BACOVA_00831 0.39 +0.4
82,823 - BACOVA_00831 0.39 +2.7
82,877 - BACOVA_00831 0.48 +2.2
82,900 + BACOVA_00831 0.52 -1.8
82,915 + BACOVA_00831 0.54 -0.1
82,990 + BACOVA_00831 0.67 +0.2
83,008 - BACOVA_00831 0.70 +1.5
83,008 - BACOVA_00831 0.70 +0.7
83,008 - BACOVA_00831 0.70 -1.4
83,011 - BACOVA_00831 0.70 -0.2
83,062 - BACOVA_00831 0.79 +1.7
83,065 + BACOVA_00831 0.79 +0.9
83,066 - BACOVA_00831 0.80 +0.2
83,066 - BACOVA_00831 0.80 -0.7
83,066 - BACOVA_00831 0.80 +1.2
83,066 - BACOVA_00831 0.80 -0.6
83,080 + BACOVA_00831 0.82 -1.1
83,081 - BACOVA_00831 0.82 +1.2
83,082 + BACOVA_00831 0.82 -0.4
83,083 - BACOVA_00831 0.82 +2.0
83,083 - BACOVA_00831 0.82 -0.1
83,083 - BACOVA_00831 0.82 -0.9
83,083 - BACOVA_00831 0.82 +0.4
83,086 + BACOVA_00831 0.83 +0.1
83,087 - BACOVA_00831 0.83 -1.5
83,087 - BACOVA_00831 0.83 -0.6
83,087 - BACOVA_00831 0.83 -1.0
83,087 - BACOVA_00831 0.83 -0.3
83,146 + -1.5
83,148 + -1.5
83,189 - -0.3
83,213 + +0.9
83,241 + +0.4
83,241 + +0.5
83,242 - +2.2
83,242 - -1.9
83,242 - +1.2
83,246 - +1.5
83,276 + +2.1
83,281 - +0.2
83,344 + -1.6
83,352 + +2.7
83,389 + +2.8
83,416 - BACOVA_00832 0.13 +0.0
83,489 + BACOVA_00832 0.28 -0.3
83,489 + BACOVA_00832 0.28 -0.8
83,490 - BACOVA_00832 0.28 -0.6
83,490 - BACOVA_00832 0.28 -0.8
83,509 + BACOVA_00832 0.32 -1.2
83,510 - BACOVA_00832 0.32 +1.2
83,510 - BACOVA_00832 0.32 +0.8
83,510 - BACOVA_00832 0.32 -0.5
83,538 + BACOVA_00832 0.38 -1.1
83,538 + BACOVA_00832 0.38 +1.9
83,539 - BACOVA_00832 0.38 -0.5
83,539 - BACOVA_00832 0.38 +1.2
83,585 - BACOVA_00832 0.48 +2.8
83,588 - BACOVA_00832 0.48 +0.2
83,617 + BACOVA_00832 0.54 -1.7
83,618 - BACOVA_00832 0.54 -2.2
83,618 - BACOVA_00832 0.54 -1.3
83,794 + +1.5
83,795 - +1.2
83,795 - -1.1
83,873 - -0.1
83,886 + +0.7
83,886 + -0.3
83,887 - -0.9
83,937 - +0.2
83,954 - -1.6
83,954 - -1.8
84,006 + +2.1
84,073 - BACOVA_00833 0.11 +1.2
84,111 + BACOVA_00833 0.13 +2.5
84,111 + BACOVA_00833 0.13 +0.2
84,112 - BACOVA_00833 0.13 +0.9
84,112 - BACOVA_00833 0.13 -0.5
84,133 + BACOVA_00833 0.14 -0.7
84,134 - BACOVA_00833 0.14 +0.9
84,138 + BACOVA_00833 0.14 +0.2
84,138 + BACOVA_00833 0.14 +0.7
84,139 - BACOVA_00833 0.14 -0.8
84,194 + BACOVA_00833 0.16 -0.7
84,200 + BACOVA_00833 0.17 +0.8
84,201 - BACOVA_00833 0.17 +3.1
84,207 - BACOVA_00833 0.17 -0.3
84,253 + BACOVA_00833 0.19 +0.7
84,253 + BACOVA_00833 0.19 -2.3
84,254 - BACOVA_00833 0.19 -0.6
84,259 - BACOVA_00833 0.19 +0.5
84,277 + BACOVA_00833 0.20 -0.1
84,277 + BACOVA_00833 0.20 -0.4
84,296 + BACOVA_00833 0.21 -0.3
84,302 + BACOVA_00833 0.21 +2.5
84,422 + BACOVA_00833 0.27 +3.0
84,423 - BACOVA_00833 0.27 -1.8
84,499 + BACOVA_00833 0.31 +3.2
84,500 - BACOVA_00833 0.31 +0.1
84,563 - BACOVA_00833 0.34 +1.1
84,620 + BACOVA_00833 0.36 -0.1
84,707 + BACOVA_00833 0.40 +0.7
84,708 - BACOVA_00833 0.40 -1.2
84,708 - BACOVA_00833 0.40 -1.9
84,712 - BACOVA_00833 0.40 +0.9
84,730 - BACOVA_00833 0.41 -0.8
84,735 + BACOVA_00833 0.41 +0.2
84,750 - BACOVA_00833 0.42 -0.4
84,791 + BACOVA_00833 0.44 -0.3
84,791 + BACOVA_00833 0.44 -0.1
84,791 + BACOVA_00833 0.44 +0.4

Or see this region's nucleotide sequence