Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_00588

Experiment: amylopectin from maize 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_00586 and BACOVA_00587 are separated by 20 nucleotidesBACOVA_00587 and BACOVA_00588 are separated by 21 nucleotidesBACOVA_00588 and BACOVA_00589 are separated by 62 nucleotidesBACOVA_00589 and BACOVA_00590 overlap by 33 nucleotides BACOVA_00586: BACOVA_00586 - tetratricopeptide repeat protein, at 20,025 to 23,306 _00586 BACOVA_00587: BACOVA_00587 - hypothetical protein, at 23,327 to 23,995 _00587 BACOVA_00588: BACOVA_00588 - hypothetical protein, at 24,017 to 25,633 _00588 BACOVA_00589: BACOVA_00589 - putative endoribonuclease L-PSP, at 25,696 to 26,103 _00589 BACOVA_00590: BACOVA_00590 - bifunctional protein FolC, at 26,071 to 27,561 _00590 Position (kb) 24 25 26Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 23.047 kb on + strandat 23.048 kb on - strandat 23.053 kb on - strandat 23.146 kb on + strandat 23.147 kb on - strandat 23.148 kb on + strandat 23.148 kb on + strandat 23.148 kb on + strandat 23.149 kb on - strandat 23.149 kb on - strandat 23.175 kb on - strandat 23.198 kb on + strandat 23.199 kb on - strandat 23.229 kb on + strandat 23.229 kb on + strandat 23.229 kb on + strandat 23.229 kb on + strandat 23.257 kb on + strandat 23.272 kb on - strandat 23.272 kb on - strandat 23.283 kb on + strandat 23.289 kb on + strandat 23.289 kb on + strandat 23.306 kb on + strandat 23.308 kb on + strandat 23.309 kb on - strandat 23.309 kb on - strandat 23.312 kb on - strandat 23.334 kb on - strandat 23.368 kb on + strandat 23.455 kb on + strand, within BACOVA_00587at 23.615 kb on + strand, within BACOVA_00587at 23.615 kb on + strand, within BACOVA_00587at 23.615 kb on + strand, within BACOVA_00587at 23.616 kb on - strand, within BACOVA_00587at 23.616 kb on - strand, within BACOVA_00587at 23.622 kb on - strand, within BACOVA_00587at 23.670 kb on + strand, within BACOVA_00587at 23.670 kb on + strand, within BACOVA_00587at 23.670 kb on + strand, within BACOVA_00587at 23.670 kb on + strand, within BACOVA_00587at 23.671 kb on - strand, within BACOVA_00587at 23.671 kb on - strand, within BACOVA_00587at 23.671 kb on - strand, within BACOVA_00587at 23.727 kb on + strand, within BACOVA_00587at 24.025 kb on + strandat 24.031 kb on + strandat 24.031 kb on + strandat 24.032 kb on - strandat 24.067 kb on + strandat 24.072 kb on + strandat 24.072 kb on + strandat 24.072 kb on + strandat 24.073 kb on - strandat 24.081 kb on - strandat 24.081 kb on - strandat 24.086 kb on - strandat 24.141 kb on - strandat 24.204 kb on + strand, within BACOVA_00588at 24.205 kb on - strand, within BACOVA_00588at 24.223 kb on + strand, within BACOVA_00588at 24.224 kb on - strand, within BACOVA_00588at 24.224 kb on - strand, within BACOVA_00588at 24.255 kb on + strand, within BACOVA_00588at 24.257 kb on + strand, within BACOVA_00588at 24.258 kb on - strand, within BACOVA_00588at 24.308 kb on - strand, within BACOVA_00588at 24.322 kb on - strand, within BACOVA_00588at 24.322 kb on - strand, within BACOVA_00588at 24.324 kb on + strand, within BACOVA_00588at 24.324 kb on + strand, within BACOVA_00588at 24.325 kb on - strand, within BACOVA_00588at 24.325 kb on - strand, within BACOVA_00588at 24.329 kb on + strand, within BACOVA_00588at 24.358 kb on - strand, within BACOVA_00588at 24.387 kb on + strand, within BACOVA_00588at 24.388 kb on - strand, within BACOVA_00588at 24.388 kb on - strand, within BACOVA_00588at 24.477 kb on - strand, within BACOVA_00588at 24.478 kb on + strand, within BACOVA_00588at 24.526 kb on + strand, within BACOVA_00588at 24.535 kb on - strand, within BACOVA_00588at 24.563 kb on - strand, within BACOVA_00588at 24.570 kb on + strand, within BACOVA_00588at 24.571 kb on - strand, within BACOVA_00588at 24.571 kb on - strand, within BACOVA_00588at 24.573 kb on + strand, within BACOVA_00588at 24.588 kb on - strand, within BACOVA_00588at 24.588 kb on - strand, within BACOVA_00588at 24.626 kb on - strand, within BACOVA_00588at 24.673 kb on + strand, within BACOVA_00588at 24.674 kb on - strand, within BACOVA_00588at 24.674 kb on - strand, within BACOVA_00588at 24.674 kb on - strand, within BACOVA_00588at 24.677 kb on - strand, within BACOVA_00588at 24.764 kb on + strand, within BACOVA_00588at 24.764 kb on + strand, within BACOVA_00588at 24.886 kb on + strand, within BACOVA_00588at 24.889 kb on + strand, within BACOVA_00588at 24.889 kb on + strand, within BACOVA_00588at 24.890 kb on - strand, within BACOVA_00588at 24.892 kb on - strand, within BACOVA_00588at 24.900 kb on + strand, within BACOVA_00588at 24.956 kb on - strand, within BACOVA_00588at 24.977 kb on + strand, within BACOVA_00588at 24.977 kb on + strand, within BACOVA_00588at 24.977 kb on + strand, within BACOVA_00588at 24.981 kb on - strand, within BACOVA_00588at 24.987 kb on - strand, within BACOVA_00588at 25.022 kb on + strand, within BACOVA_00588at 25.023 kb on - strand, within BACOVA_00588at 25.026 kb on + strand, within BACOVA_00588at 25.026 kb on + strand, within BACOVA_00588at 25.026 kb on + strand, within BACOVA_00588at 25.027 kb on - strand, within BACOVA_00588at 25.041 kb on - strand, within BACOVA_00588at 25.069 kb on + strand, within BACOVA_00588at 25.102 kb on - strand, within BACOVA_00588at 25.106 kb on + strand, within BACOVA_00588at 25.167 kb on + strand, within BACOVA_00588at 25.202 kb on - strand, within BACOVA_00588at 25.205 kb on + strand, within BACOVA_00588at 25.205 kb on + strand, within BACOVA_00588at 25.317 kb on + strand, within BACOVA_00588at 25.341 kb on + strand, within BACOVA_00588at 25.420 kb on + strand, within BACOVA_00588at 25.421 kb on - strand, within BACOVA_00588at 25.444 kb on + strand, within BACOVA_00588at 25.444 kb on + strand, within BACOVA_00588at 25.445 kb on - strand, within BACOVA_00588at 25.445 kb on - strand, within BACOVA_00588at 25.503 kb on - strandat 25.562 kb on + strandat 25.562 kb on + strandat 25.562 kb on + strandat 25.594 kb on + strandat 25.605 kb on - strandat 25.610 kb on + strandat 25.610 kb on + strandat 25.611 kb on - strandat 25.617 kb on + strandat 25.617 kb on + strandat 25.618 kb on - strandat 25.622 kb on - strandat 25.622 kb on - strandat 25.622 kb on - strandat 25.647 kb on - strandat 25.724 kb on + strandat 25.724 kb on + strandat 25.727 kb on - strandat 25.728 kb on + strandat 25.739 kb on + strand, within BACOVA_00589at 25.778 kb on - strand, within BACOVA_00589at 25.791 kb on - strand, within BACOVA_00589at 25.808 kb on + strand, within BACOVA_00589at 25.809 kb on - strand, within BACOVA_00589at 25.809 kb on - strand, within BACOVA_00589at 25.809 kb on - strand, within BACOVA_00589at 25.831 kb on - strand, within BACOVA_00589at 25.896 kb on + strand, within BACOVA_00589at 25.969 kb on - strand, within BACOVA_00589at 25.969 kb on - strand, within BACOVA_00589at 25.969 kb on - strand, within BACOVA_00589at 26.000 kb on - strand, within BACOVA_00589at 26.009 kb on - strand, within BACOVA_00589at 26.073 kb on - strandat 26.075 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction amylopectin from maize 2.5 mg/ml (C)
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23,047 + +2.2
23,048 - +0.5
23,053 - +0.2
23,146 + -0.7
23,147 - -0.6
23,148 + -1.1
23,148 + +0.0
23,148 + -1.0
23,149 - -2.6
23,149 - -0.8
23,175 - +0.6
23,198 + -1.0
23,199 - -0.8
23,229 + +0.4
23,229 + -2.0
23,229 + -1.9
23,229 + -1.9
23,257 + -1.1
23,272 - +0.9
23,272 - +0.9
23,283 + -0.6
23,289 + +1.8
23,289 + -1.0
23,306 + -2.4
23,308 + +1.4
23,309 - -1.0
23,309 - -2.4
23,312 - +1.2
23,334 - -1.4
23,368 + +0.2
23,455 + BACOVA_00587 0.19 -1.4
23,615 + BACOVA_00587 0.43 -0.4
23,615 + BACOVA_00587 0.43 +0.7
23,615 + BACOVA_00587 0.43 -0.3
23,616 - BACOVA_00587 0.43 +0.6
23,616 - BACOVA_00587 0.43 -1.8
23,622 - BACOVA_00587 0.44 +0.2
23,670 + BACOVA_00587 0.51 -0.1
23,670 + BACOVA_00587 0.51 -2.0
23,670 + BACOVA_00587 0.51 +1.2
23,670 + BACOVA_00587 0.51 +0.6
23,671 - BACOVA_00587 0.51 -1.0
23,671 - BACOVA_00587 0.51 +1.2
23,671 - BACOVA_00587 0.51 -0.5
23,727 + BACOVA_00587 0.60 +1.6
24,025 + +0.0
24,031 + -0.2
24,031 + +1.0
24,032 - -2.0
24,067 + -2.3
24,072 + +0.0
24,072 + -0.5
24,072 + -0.1
24,073 - -0.6
24,081 - -0.4
24,081 - -0.6
24,086 - +2.2
24,141 - +0.6
24,204 + BACOVA_00588 0.12 -0.2
24,205 - BACOVA_00588 0.12 -1.7
24,223 + BACOVA_00588 0.13 +0.4
24,224 - BACOVA_00588 0.13 +0.0
24,224 - BACOVA_00588 0.13 +0.6
24,255 + BACOVA_00588 0.15 -2.2
24,257 + BACOVA_00588 0.15 +2.0
24,258 - BACOVA_00588 0.15 +1.5
24,308 - BACOVA_00588 0.18 +1.8
24,322 - BACOVA_00588 0.19 -0.0
24,322 - BACOVA_00588 0.19 -1.4
24,324 + BACOVA_00588 0.19 +0.6
24,324 + BACOVA_00588 0.19 -0.1
24,325 - BACOVA_00588 0.19 +1.8
24,325 - BACOVA_00588 0.19 +0.6
24,329 + BACOVA_00588 0.19 -1.3
24,358 - BACOVA_00588 0.21 +1.2
24,387 + BACOVA_00588 0.23 -1.4
24,388 - BACOVA_00588 0.23 +0.2
24,388 - BACOVA_00588 0.23 -0.1
24,477 - BACOVA_00588 0.28 -1.4
24,478 + BACOVA_00588 0.29 -2.0
24,526 + BACOVA_00588 0.31 -1.0
24,535 - BACOVA_00588 0.32 +0.4
24,563 - BACOVA_00588 0.34 +1.5
24,570 + BACOVA_00588 0.34 +1.9
24,571 - BACOVA_00588 0.34 +0.1
24,571 - BACOVA_00588 0.34 -0.4
24,573 + BACOVA_00588 0.34 +0.2
24,588 - BACOVA_00588 0.35 +1.5
24,588 - BACOVA_00588 0.35 -2.0
24,626 - BACOVA_00588 0.38 -1.1
24,673 + BACOVA_00588 0.41 -1.3
24,674 - BACOVA_00588 0.41 +1.6
24,674 - BACOVA_00588 0.41 -0.6
24,674 - BACOVA_00588 0.41 +2.2
24,677 - BACOVA_00588 0.41 +0.6
24,764 + BACOVA_00588 0.46 -1.0
24,764 + BACOVA_00588 0.46 +1.2
24,886 + BACOVA_00588 0.54 +0.4
24,889 + BACOVA_00588 0.54 -2.4
24,889 + BACOVA_00588 0.54 +0.7
24,890 - BACOVA_00588 0.54 -2.3
24,892 - BACOVA_00588 0.54 -0.3
24,900 + BACOVA_00588 0.55 -1.0
24,956 - BACOVA_00588 0.58 -1.1
24,977 + BACOVA_00588 0.59 -1.7
24,977 + BACOVA_00588 0.59 -1.9
24,977 + BACOVA_00588 0.59 -0.8
24,981 - BACOVA_00588 0.60 -1.0
24,987 - BACOVA_00588 0.60 -0.1
25,022 + BACOVA_00588 0.62 -0.4
25,023 - BACOVA_00588 0.62 +0.6
25,026 + BACOVA_00588 0.62 -0.8
25,026 + BACOVA_00588 0.62 +0.6
25,026 + BACOVA_00588 0.62 -0.1
25,027 - BACOVA_00588 0.62 +0.2
25,041 - BACOVA_00588 0.63 +0.9
25,069 + BACOVA_00588 0.65 -0.4
25,102 - BACOVA_00588 0.67 -1.8
25,106 + BACOVA_00588 0.67 +0.2
25,167 + BACOVA_00588 0.71 -0.6
25,202 - BACOVA_00588 0.73 -2.0
25,205 + BACOVA_00588 0.73 -1.6
25,205 + BACOVA_00588 0.73 -1.0
25,317 + BACOVA_00588 0.80 +0.6
25,341 + BACOVA_00588 0.82 +0.0
25,420 + BACOVA_00588 0.87 +1.0
25,421 - BACOVA_00588 0.87 -0.3
25,444 + BACOVA_00588 0.88 -1.1
25,444 + BACOVA_00588 0.88 -0.1
25,445 - BACOVA_00588 0.88 +3.6
25,445 - BACOVA_00588 0.88 +0.9
25,503 - -1.0
25,562 + +3.0
25,562 + +1.0
25,562 + +1.2
25,594 + +4.1
25,605 - +1.0
25,610 + -0.4
25,610 + +2.1
25,611 - +1.3
25,617 + -1.5
25,617 + -0.3
25,618 - +1.6
25,622 - +1.2
25,622 - -1.1
25,622 - -0.8
25,647 - +0.6
25,724 + +0.6
25,724 + -2.8
25,727 - +1.2
25,728 + -0.8
25,739 + BACOVA_00589 0.11 -0.5
25,778 - BACOVA_00589 0.20 -1.9
25,791 - BACOVA_00589 0.23 -2.7
25,808 + BACOVA_00589 0.27 +1.2
25,809 - BACOVA_00589 0.28 -3.9
25,809 - BACOVA_00589 0.28 -0.3
25,809 - BACOVA_00589 0.28 -1.0
25,831 - BACOVA_00589 0.33 -2.3
25,896 + BACOVA_00589 0.49 -2.7
25,969 - BACOVA_00589 0.67 +1.2
25,969 - BACOVA_00589 0.67 -1.6
25,969 - BACOVA_00589 0.67 -2.1
26,000 - BACOVA_00589 0.75 -1.5
26,009 - BACOVA_00589 0.77 +0.3
26,073 - -1.5
26,075 + +0.2

Or see this region's nucleotide sequence