Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_00319

Experiment: amylopectin from maize 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_00318 and BACOVA_00319 overlap by 17 nucleotidesBACOVA_00319 and BACOVA_00320 are separated by 109 nucleotides BACOVA_00318: BACOVA_00318 - hypothetical protein, at 586,917 to 588,680 _00318 BACOVA_00319: BACOVA_00319 - hypothetical protein, at 588,664 to 590,439 _00319 BACOVA_00320: BACOVA_00320 - hypothetical protein, at 590,549 to 590,836 _00320 Position (kb) 588 589 590 591Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 587.671 kb on + strand, within BACOVA_00318at 587.672 kb on - strand, within BACOVA_00318at 587.745 kb on - strand, within BACOVA_00318at 587.760 kb on - strand, within BACOVA_00318at 587.780 kb on + strand, within BACOVA_00318at 587.788 kb on + strand, within BACOVA_00318at 587.789 kb on - strand, within BACOVA_00318at 587.789 kb on - strand, within BACOVA_00318at 587.835 kb on - strand, within BACOVA_00318at 587.866 kb on - strand, within BACOVA_00318at 587.867 kb on + strand, within BACOVA_00318at 587.868 kb on - strand, within BACOVA_00318at 587.868 kb on - strand, within BACOVA_00318at 587.899 kb on + strand, within BACOVA_00318at 587.900 kb on - strand, within BACOVA_00318at 587.914 kb on - strand, within BACOVA_00318at 587.939 kb on - strand, within BACOVA_00318at 587.939 kb on - strand, within BACOVA_00318at 587.947 kb on + strand, within BACOVA_00318at 587.948 kb on - strand, within BACOVA_00318at 588.001 kb on + strand, within BACOVA_00318at 588.028 kb on - strand, within BACOVA_00318at 588.028 kb on - strand, within BACOVA_00318at 588.028 kb on - strand, within BACOVA_00318at 588.038 kb on + strand, within BACOVA_00318at 588.049 kb on + strand, within BACOVA_00318at 588.086 kb on + strand, within BACOVA_00318at 588.140 kb on + strand, within BACOVA_00318at 588.140 kb on + strand, within BACOVA_00318at 588.143 kb on + strand, within BACOVA_00318at 588.153 kb on - strand, within BACOVA_00318at 588.184 kb on - strand, within BACOVA_00318at 588.220 kb on - strand, within BACOVA_00318at 588.220 kb on - strand, within BACOVA_00318at 588.244 kb on - strand, within BACOVA_00318at 588.271 kb on + strand, within BACOVA_00318at 588.278 kb on - strand, within BACOVA_00318at 588.280 kb on + strand, within BACOVA_00318at 588.315 kb on + strand, within BACOVA_00318at 588.396 kb on - strand, within BACOVA_00318at 588.420 kb on - strand, within BACOVA_00318at 588.423 kb on + strand, within BACOVA_00318at 588.423 kb on + strand, within BACOVA_00318at 588.424 kb on - strand, within BACOVA_00318at 588.424 kb on - strand, within BACOVA_00318at 588.424 kb on - strand, within BACOVA_00318at 588.425 kb on + strand, within BACOVA_00318at 588.425 kb on + strand, within BACOVA_00318at 588.426 kb on - strand, within BACOVA_00318at 588.448 kb on - strand, within BACOVA_00318at 588.449 kb on + strand, within BACOVA_00318at 588.482 kb on + strand, within BACOVA_00318at 588.483 kb on - strand, within BACOVA_00318at 588.483 kb on - strand, within BACOVA_00318at 588.485 kb on - strand, within BACOVA_00318at 588.493 kb on + strand, within BACOVA_00318at 588.493 kb on + strand, within BACOVA_00318at 588.494 kb on - strand, within BACOVA_00318at 588.541 kb on - strandat 588.591 kb on + strandat 588.593 kb on + strandat 588.594 kb on - strandat 588.646 kb on + strandat 588.646 kb on + strandat 588.678 kb on + strandat 588.678 kb on + strandat 588.678 kb on + strandat 588.679 kb on - strandat 588.682 kb on + strandat 588.683 kb on - strandat 588.790 kb on + strandat 588.790 kb on - strandat 588.826 kb on + strandat 588.827 kb on - strandat 588.827 kb on - strandat 588.829 kb on + strandat 588.830 kb on - strandat 588.838 kb on - strandat 588.843 kb on + strand, within BACOVA_00319at 588.843 kb on + strand, within BACOVA_00319at 588.844 kb on - strand, within BACOVA_00319at 588.844 kb on - strand, within BACOVA_00319at 588.850 kb on - strand, within BACOVA_00319at 588.868 kb on + strand, within BACOVA_00319at 588.934 kb on + strand, within BACOVA_00319at 588.935 kb on - strand, within BACOVA_00319at 589.010 kb on - strand, within BACOVA_00319at 589.010 kb on - strand, within BACOVA_00319at 589.011 kb on + strand, within BACOVA_00319at 589.011 kb on + strand, within BACOVA_00319at 589.011 kb on + strand, within BACOVA_00319at 589.012 kb on - strand, within BACOVA_00319at 589.012 kb on - strand, within BACOVA_00319at 589.012 kb on - strand, within BACOVA_00319at 589.013 kb on + strand, within BACOVA_00319at 589.014 kb on - strand, within BACOVA_00319at 589.049 kb on - strand, within BACOVA_00319at 589.057 kb on - strand, within BACOVA_00319at 589.086 kb on - strand, within BACOVA_00319at 589.098 kb on - strand, within BACOVA_00319at 589.178 kb on - strand, within BACOVA_00319at 589.192 kb on + strand, within BACOVA_00319at 589.192 kb on + strand, within BACOVA_00319at 589.193 kb on - strand, within BACOVA_00319at 589.218 kb on + strand, within BACOVA_00319at 589.218 kb on + strand, within BACOVA_00319at 589.223 kb on - strand, within BACOVA_00319at 589.256 kb on + strand, within BACOVA_00319at 589.257 kb on - strand, within BACOVA_00319at 589.313 kb on - strand, within BACOVA_00319at 589.357 kb on - strand, within BACOVA_00319at 589.394 kb on - strand, within BACOVA_00319at 589.454 kb on + strand, within BACOVA_00319at 589.471 kb on - strand, within BACOVA_00319at 589.471 kb on - strand, within BACOVA_00319at 589.471 kb on - strand, within BACOVA_00319at 589.503 kb on - strand, within BACOVA_00319at 589.542 kb on + strand, within BACOVA_00319at 589.547 kb on - strand, within BACOVA_00319at 589.567 kb on - strand, within BACOVA_00319at 589.569 kb on + strand, within BACOVA_00319at 589.570 kb on - strand, within BACOVA_00319at 589.570 kb on - strand, within BACOVA_00319at 589.607 kb on + strand, within BACOVA_00319at 589.607 kb on + strand, within BACOVA_00319at 589.608 kb on - strand, within BACOVA_00319at 589.608 kb on - strand, within BACOVA_00319at 589.608 kb on - strand, within BACOVA_00319at 589.659 kb on - strand, within BACOVA_00319at 589.747 kb on - strand, within BACOVA_00319at 589.761 kb on + strand, within BACOVA_00319at 589.783 kb on + strand, within BACOVA_00319at 589.784 kb on - strand, within BACOVA_00319at 589.816 kb on - strand, within BACOVA_00319at 589.821 kb on + strand, within BACOVA_00319at 589.822 kb on - strand, within BACOVA_00319at 589.822 kb on - strand, within BACOVA_00319at 589.826 kb on + strand, within BACOVA_00319at 589.870 kb on + strand, within BACOVA_00319at 589.902 kb on - strand, within BACOVA_00319at 589.959 kb on + strand, within BACOVA_00319at 589.979 kb on + strand, within BACOVA_00319at 589.980 kb on - strand, within BACOVA_00319at 590.022 kb on + strand, within BACOVA_00319at 590.023 kb on - strand, within BACOVA_00319at 590.023 kb on - strand, within BACOVA_00319at 590.023 kb on - strand, within BACOVA_00319at 590.023 kb on - strand, within BACOVA_00319at 590.026 kb on + strand, within BACOVA_00319at 590.042 kb on + strand, within BACOVA_00319at 590.103 kb on - strand, within BACOVA_00319at 590.110 kb on + strand, within BACOVA_00319at 590.110 kb on + strand, within BACOVA_00319at 590.110 kb on + strand, within BACOVA_00319at 590.110 kb on + strand, within BACOVA_00319at 590.316 kb on + strandat 590.334 kb on + strandat 590.350 kb on - strandat 590.425 kb on + strandat 590.428 kb on - strandat 590.429 kb on + strandat 590.429 kb on + strandat 590.444 kb on + strandat 590.445 kb on - strandat 590.446 kb on + strandat 590.452 kb on + strandat 590.452 kb on + strandat 590.453 kb on - strandat 590.465 kb on - strandat 590.465 kb on - strandat 590.470 kb on - strandat 590.482 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction amylopectin from maize 2.5 mg/ml (C)
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587,671 + BACOVA_00318 0.43 +1.9
587,672 - BACOVA_00318 0.43 +1.3
587,745 - BACOVA_00318 0.47 +0.0
587,760 - BACOVA_00318 0.48 +0.5
587,780 + BACOVA_00318 0.49 +1.3
587,788 + BACOVA_00318 0.49 -1.3
587,789 - BACOVA_00318 0.49 -1.5
587,789 - BACOVA_00318 0.49 -0.3
587,835 - BACOVA_00318 0.52 +3.6
587,866 - BACOVA_00318 0.54 -1.0
587,867 + BACOVA_00318 0.54 -1.0
587,868 - BACOVA_00318 0.54 +0.2
587,868 - BACOVA_00318 0.54 +0.0
587,899 + BACOVA_00318 0.56 -1.0
587,900 - BACOVA_00318 0.56 -0.5
587,914 - BACOVA_00318 0.57 -1.0
587,939 - BACOVA_00318 0.58 -0.9
587,939 - BACOVA_00318 0.58 -1.9
587,947 + BACOVA_00318 0.58 -0.3
587,948 - BACOVA_00318 0.58 -0.1
588,001 + BACOVA_00318 0.61 -0.1
588,028 - BACOVA_00318 0.63 -0.1
588,028 - BACOVA_00318 0.63 +1.8
588,028 - BACOVA_00318 0.63 -0.8
588,038 + BACOVA_00318 0.64 -1.8
588,049 + BACOVA_00318 0.64 -1.3
588,086 + BACOVA_00318 0.66 +3.0
588,140 + BACOVA_00318 0.69 -0.8
588,140 + BACOVA_00318 0.69 -0.0
588,143 + BACOVA_00318 0.70 +0.8
588,153 - BACOVA_00318 0.70 -0.7
588,184 - BACOVA_00318 0.72 +2.0
588,220 - BACOVA_00318 0.74 -1.4
588,220 - BACOVA_00318 0.74 -1.3
588,244 - BACOVA_00318 0.75 -0.5
588,271 + BACOVA_00318 0.77 -0.7
588,278 - BACOVA_00318 0.77 +0.5
588,280 + BACOVA_00318 0.77 -2.0
588,315 + BACOVA_00318 0.79 +1.0
588,396 - BACOVA_00318 0.84 -0.7
588,420 - BACOVA_00318 0.85 -0.3
588,423 + BACOVA_00318 0.85 -1.5
588,423 + BACOVA_00318 0.85 +0.5
588,424 - BACOVA_00318 0.85 +2.6
588,424 - BACOVA_00318 0.85 -1.9
588,424 - BACOVA_00318 0.85 +0.5
588,425 + BACOVA_00318 0.85 +0.5
588,425 + BACOVA_00318 0.85 -1.5
588,426 - BACOVA_00318 0.86 -1.2
588,448 - BACOVA_00318 0.87 -2.5
588,449 + BACOVA_00318 0.87 +2.7
588,482 + BACOVA_00318 0.89 -0.8
588,483 - BACOVA_00318 0.89 -1.4
588,483 - BACOVA_00318 0.89 -2.2
588,485 - BACOVA_00318 0.89 +1.2
588,493 + BACOVA_00318 0.89 -1.1
588,493 + BACOVA_00318 0.89 +0.5
588,494 - BACOVA_00318 0.89 -0.5
588,541 - +3.6
588,591 + -0.9
588,593 + -0.2
588,594 - -0.8
588,646 + +0.3
588,646 + +0.5
588,678 + +0.2
588,678 + -2.0
588,678 + -0.5
588,679 - +0.5
588,682 + -0.3
588,683 - +2.0
588,790 + -1.0
588,790 - +1.0
588,826 + +0.0
588,827 - -0.4
588,827 - +0.0
588,829 + -0.0
588,830 - -1.3
588,838 - +1.0
588,843 + BACOVA_00319 0.10 +0.5
588,843 + BACOVA_00319 0.10 +1.6
588,844 - BACOVA_00319 0.10 +2.0
588,844 - BACOVA_00319 0.10 +2.3
588,850 - BACOVA_00319 0.10 -1.0
588,868 + BACOVA_00319 0.11 -0.5
588,934 + BACOVA_00319 0.15 +0.0
588,935 - BACOVA_00319 0.15 +2.2
589,010 - BACOVA_00319 0.19 -0.8
589,010 - BACOVA_00319 0.19 +2.0
589,011 + BACOVA_00319 0.20 -1.1
589,011 + BACOVA_00319 0.20 +2.6
589,011 + BACOVA_00319 0.20 +0.0
589,012 - BACOVA_00319 0.20 +1.8
589,012 - BACOVA_00319 0.20 -0.3
589,012 - BACOVA_00319 0.20 -0.3
589,013 + BACOVA_00319 0.20 +0.5
589,014 - BACOVA_00319 0.20 +1.0
589,049 - BACOVA_00319 0.22 +0.4
589,057 - BACOVA_00319 0.22 -1.0
589,086 - BACOVA_00319 0.24 +0.5
589,098 - BACOVA_00319 0.24 -1.6
589,178 - BACOVA_00319 0.29 -0.5
589,192 + BACOVA_00319 0.30 -0.8
589,192 + BACOVA_00319 0.30 +1.0
589,193 - BACOVA_00319 0.30 -0.3
589,218 + BACOVA_00319 0.31 -0.6
589,218 + BACOVA_00319 0.31 -0.5
589,223 - BACOVA_00319 0.31 -0.5
589,256 + BACOVA_00319 0.33 -0.8
589,257 - BACOVA_00319 0.33 -0.2
589,313 - BACOVA_00319 0.37 -1.1
589,357 - BACOVA_00319 0.39 -0.7
589,394 - BACOVA_00319 0.41 -1.2
589,454 + BACOVA_00319 0.44 -0.8
589,471 - BACOVA_00319 0.45 +0.5
589,471 - BACOVA_00319 0.45 +0.7
589,471 - BACOVA_00319 0.45 -1.3
589,503 - BACOVA_00319 0.47 -1.7
589,542 + BACOVA_00319 0.49 -1.3
589,547 - BACOVA_00319 0.50 -2.5
589,567 - BACOVA_00319 0.51 -0.4
589,569 + BACOVA_00319 0.51 -1.0
589,570 - BACOVA_00319 0.51 -0.8
589,570 - BACOVA_00319 0.51 +0.5
589,607 + BACOVA_00319 0.53 +1.0
589,607 + BACOVA_00319 0.53 -0.5
589,608 - BACOVA_00319 0.53 -0.5
589,608 - BACOVA_00319 0.53 +2.5
589,608 - BACOVA_00319 0.53 -1.4
589,659 - BACOVA_00319 0.56 -1.0
589,747 - BACOVA_00319 0.61 -1.1
589,761 + BACOVA_00319 0.62 +0.5
589,783 + BACOVA_00319 0.63 +1.4
589,784 - BACOVA_00319 0.63 -1.0
589,816 - BACOVA_00319 0.65 +2.6
589,821 + BACOVA_00319 0.65 -1.5
589,822 - BACOVA_00319 0.65 +1.7
589,822 - BACOVA_00319 0.65 +2.7
589,826 + BACOVA_00319 0.65 -0.1
589,870 + BACOVA_00319 0.68 +0.7
589,902 - BACOVA_00319 0.70 -1.0
589,959 + BACOVA_00319 0.73 -0.5
589,979 + BACOVA_00319 0.74 -0.4
589,980 - BACOVA_00319 0.74 -1.1
590,022 + BACOVA_00319 0.76 -0.1
590,023 - BACOVA_00319 0.77 +0.8
590,023 - BACOVA_00319 0.77 -1.4
590,023 - BACOVA_00319 0.77 -1.4
590,023 - BACOVA_00319 0.77 -1.5
590,026 + BACOVA_00319 0.77 +0.0
590,042 + BACOVA_00319 0.78 +0.3
590,103 - BACOVA_00319 0.81 +3.0
590,110 + BACOVA_00319 0.81 +3.5
590,110 + BACOVA_00319 0.81 -2.4
590,110 + BACOVA_00319 0.81 -1.5
590,110 + BACOVA_00319 0.81 -1.7
590,316 + -2.9
590,334 + -0.0
590,350 - -0.3
590,425 + -0.5
590,428 - +0.0
590,429 + -0.1
590,429 + -2.0
590,444 + -2.4
590,445 - +1.6
590,446 + +1.2
590,452 + -1.4
590,452 + +1.8
590,453 - -0.6
590,465 - +0.0
590,465 - -0.5
590,470 - -1.5
590,482 - -2.3

Or see this region's nucleotide sequence