Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_00256

Experiment: amylopectin from maize 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_00255 and BACOVA_00256 are separated by 145 nucleotidesBACOVA_00256 and BACOVA_00257 are separated by 16 nucleotides BACOVA_00255: BACOVA_00255 - transposase, IS4 family, at 37,231 to 38,133 _00255 BACOVA_00256: BACOVA_00256 - hypothetical protein, at 38,279 to 40,264 _00256 BACOVA_00257: BACOVA_00257 - glycosyl hydrolase, family 43, at 40,281 to 41,657 _00257 Position (kb) 38 39 40 41Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 37.294 kb on + strandat 37.294 kb on + strandat 37.295 kb on - strandat 37.295 kb on - strandat 37.295 kb on - strandat 37.297 kb on - strandat 37.297 kb on - strandat 37.363 kb on - strand, within BACOVA_00255at 37.379 kb on + strand, within BACOVA_00255at 37.380 kb on - strand, within BACOVA_00255at 37.434 kb on + strand, within BACOVA_00255at 37.435 kb on - strand, within BACOVA_00255at 37.443 kb on + strand, within BACOVA_00255at 37.443 kb on + strand, within BACOVA_00255at 37.499 kb on + strand, within BACOVA_00255at 37.500 kb on - strand, within BACOVA_00255at 37.522 kb on - strand, within BACOVA_00255at 37.523 kb on + strand, within BACOVA_00255at 37.523 kb on + strand, within BACOVA_00255at 37.524 kb on - strand, within BACOVA_00255at 37.524 kb on - strand, within BACOVA_00255at 37.542 kb on + strand, within BACOVA_00255at 37.543 kb on - strand, within BACOVA_00255at 37.543 kb on - strand, within BACOVA_00255at 37.543 kb on - strand, within BACOVA_00255at 37.543 kb on - strand, within BACOVA_00255at 37.544 kb on + strand, within BACOVA_00255at 37.613 kb on - strand, within BACOVA_00255at 37.664 kb on + strand, within BACOVA_00255at 37.664 kb on + strand, within BACOVA_00255at 37.664 kb on + strand, within BACOVA_00255at 37.665 kb on - strand, within BACOVA_00255at 37.665 kb on - strand, within BACOVA_00255at 37.666 kb on + strand, within BACOVA_00255at 37.667 kb on - strand, within BACOVA_00255at 37.667 kb on - strand, within BACOVA_00255at 37.667 kb on - strand, within BACOVA_00255at 37.672 kb on - strand, within BACOVA_00255at 37.672 kb on - strand, within BACOVA_00255at 37.672 kb on - strand, within BACOVA_00255at 37.767 kb on + strand, within BACOVA_00255at 37.833 kb on - strand, within BACOVA_00255at 37.846 kb on - strand, within BACOVA_00255at 37.850 kb on + strand, within BACOVA_00255at 37.850 kb on + strand, within BACOVA_00255at 37.857 kb on + strand, within BACOVA_00255at 37.857 kb on + strand, within BACOVA_00255at 38.033 kb on + strand, within BACOVA_00255at 38.057 kb on - strandat 38.057 kb on - strandat 38.063 kb on + strandat 38.080 kb on - strandat 38.096 kb on - strandat 38.096 kb on - strandat 38.111 kb on + strandat 38.115 kb on + strandat 38.192 kb on + strandat 38.197 kb on - strandat 38.254 kb on - strandat 38.254 kb on - strandat 38.261 kb on + strandat 38.261 kb on + strandat 38.270 kb on + strandat 38.271 kb on - strandat 38.271 kb on - strandat 38.278 kb on - strandat 38.305 kb on - strandat 38.348 kb on - strandat 38.404 kb on + strandat 38.405 kb on - strandat 38.405 kb on - strandat 38.405 kb on - strandat 38.406 kb on + strandat 38.408 kb on + strandat 38.408 kb on + strandat 38.408 kb on + strandat 38.409 kb on - strandat 38.409 kb on - strandat 38.410 kb on + strandat 38.410 kb on + strandat 38.410 kb on + strandat 38.410 kb on + strandat 38.410 kb on + strandat 38.410 kb on + strandat 38.411 kb on - strandat 38.415 kb on + strandat 38.416 kb on - strandat 38.418 kb on - strandat 38.465 kb on - strandat 38.527 kb on - strand, within BACOVA_00256at 38.537 kb on + strand, within BACOVA_00256at 38.603 kb on + strand, within BACOVA_00256at 38.674 kb on + strand, within BACOVA_00256at 38.706 kb on - strand, within BACOVA_00256at 38.838 kb on - strand, within BACOVA_00256at 38.852 kb on - strand, within BACOVA_00256at 38.894 kb on + strand, within BACOVA_00256at 38.970 kb on - strand, within BACOVA_00256at 39.008 kb on + strand, within BACOVA_00256at 39.192 kb on - strand, within BACOVA_00256at 39.201 kb on - strand, within BACOVA_00256at 39.201 kb on - strand, within BACOVA_00256at 39.253 kb on + strand, within BACOVA_00256at 39.275 kb on + strand, within BACOVA_00256at 39.276 kb on - strand, within BACOVA_00256at 39.277 kb on + strand, within BACOVA_00256at 39.303 kb on - strand, within BACOVA_00256at 39.393 kb on + strand, within BACOVA_00256at 39.411 kb on - strand, within BACOVA_00256at 39.460 kb on + strand, within BACOVA_00256at 39.461 kb on - strand, within BACOVA_00256at 39.598 kb on + strand, within BACOVA_00256at 39.599 kb on - strand, within BACOVA_00256at 39.628 kb on + strand, within BACOVA_00256at 39.629 kb on - strand, within BACOVA_00256at 39.666 kb on - strand, within BACOVA_00256at 39.994 kb on - strand, within BACOVA_00256at 39.994 kb on - strand, within BACOVA_00256at 40.023 kb on - strand, within BACOVA_00256at 40.146 kb on - strandat 40.186 kb on + strandat 40.187 kb on - strandat 40.187 kb on - strandat 40.187 kb on - strandat 40.187 kb on - strandat 40.265 kb on + strandat 40.272 kb on + strandat 40.272 kb on + strandat 40.289 kb on + strandat 40.359 kb on + strandat 40.360 kb on - strandat 40.360 kb on - strandat 40.360 kb on - strandat 40.360 kb on - strandat 40.365 kb on + strandat 40.385 kb on + strandat 40.385 kb on + strandat 40.388 kb on + strandat 40.410 kb on + strandat 40.446 kb on - strand, within BACOVA_00257at 40.453 kb on - strand, within BACOVA_00257at 40.453 kb on - strand, within BACOVA_00257at 40.515 kb on + strand, within BACOVA_00257at 40.516 kb on - strand, within BACOVA_00257at 40.643 kb on + strand, within BACOVA_00257at 40.644 kb on - strand, within BACOVA_00257at 40.644 kb on - strand, within BACOVA_00257at 40.644 kb on - strand, within BACOVA_00257at 40.644 kb on - strand, within BACOVA_00257at 40.647 kb on + strand, within BACOVA_00257at 40.647 kb on + strand, within BACOVA_00257at 40.647 kb on + strand, within BACOVA_00257at 40.648 kb on - strand, within BACOVA_00257at 40.648 kb on - strand, within BACOVA_00257at 40.648 kb on - strand, within BACOVA_00257at 40.648 kb on - strand, within BACOVA_00257at 40.707 kb on + strand, within BACOVA_00257at 40.707 kb on + strand, within BACOVA_00257at 40.800 kb on + strand, within BACOVA_00257at 40.800 kb on + strand, within BACOVA_00257at 40.801 kb on - strand, within BACOVA_00257at 40.801 kb on - strand, within BACOVA_00257at 40.802 kb on + strand, within BACOVA_00257at 40.802 kb on + strand, within BACOVA_00257at 40.802 kb on + strand, within BACOVA_00257at 40.802 kb on + strand, within BACOVA_00257at 40.803 kb on - strand, within BACOVA_00257at 40.803 kb on - strand, within BACOVA_00257at 40.806 kb on + strand, within BACOVA_00257at 40.827 kb on + strand, within BACOVA_00257at 40.828 kb on - strand, within BACOVA_00257at 40.828 kb on - strand, within BACOVA_00257at 40.830 kb on - strand, within BACOVA_00257at 40.830 kb on - strand, within BACOVA_00257at 40.861 kb on - strand, within BACOVA_00257at 40.935 kb on + strand, within BACOVA_00257at 40.936 kb on - strand, within BACOVA_00257at 40.939 kb on - strand, within BACOVA_00257at 40.941 kb on + strand, within BACOVA_00257at 40.979 kb on - strand, within BACOVA_00257at 40.980 kb on - strand, within BACOVA_00257at 40.983 kb on + strand, within BACOVA_00257at 40.984 kb on - strand, within BACOVA_00257at 41.115 kb on + strand, within BACOVA_00257at 41.179 kb on + strand, within BACOVA_00257at 41.180 kb on - strand, within BACOVA_00257at 41.184 kb on + strand, within BACOVA_00257at 41.184 kb on + strand, within BACOVA_00257at 41.184 kb on + strand, within BACOVA_00257at 41.185 kb on - strand, within BACOVA_00257at 41.185 kb on - strand, within BACOVA_00257at 41.185 kb on - strand, within BACOVA_00257at 41.217 kb on + strand, within BACOVA_00257at 41.218 kb on - strand, within BACOVA_00257at 41.231 kb on + strand, within BACOVA_00257

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Per-strain Table

Position Strand Gene LocusTag Fraction amylopectin from maize 2.5 mg/ml (C)
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37,294 + -0.5
37,294 + -1.0
37,295 - -2.0
37,295 - -1.4
37,295 - +1.7
37,297 - -0.3
37,297 - -0.2
37,363 - BACOVA_00255 0.15 -0.9
37,379 + BACOVA_00255 0.16 -0.0
37,380 - BACOVA_00255 0.17 -1.4
37,434 + BACOVA_00255 0.22 -0.7
37,435 - BACOVA_00255 0.23 -2.8
37,443 + BACOVA_00255 0.23 -1.7
37,443 + BACOVA_00255 0.23 +0.8
37,499 + BACOVA_00255 0.30 +0.7
37,500 - BACOVA_00255 0.30 -2.2
37,522 - BACOVA_00255 0.32 -0.8
37,523 + BACOVA_00255 0.32 -1.9
37,523 + BACOVA_00255 0.32 +0.7
37,524 - BACOVA_00255 0.32 +1.3
37,524 - BACOVA_00255 0.32 +0.4
37,542 + BACOVA_00255 0.34 +0.6
37,543 - BACOVA_00255 0.35 +2.9
37,543 - BACOVA_00255 0.35 -0.7
37,543 - BACOVA_00255 0.35 +0.3
37,543 - BACOVA_00255 0.35 +1.3
37,544 + BACOVA_00255 0.35 +2.4
37,613 - BACOVA_00255 0.42 +1.3
37,664 + BACOVA_00255 0.48 +1.3
37,664 + BACOVA_00255 0.48 -0.4
37,664 + BACOVA_00255 0.48 +1.7
37,665 - BACOVA_00255 0.48 -1.9
37,665 - BACOVA_00255 0.48 +0.5
37,666 + BACOVA_00255 0.48 +0.4
37,667 - BACOVA_00255 0.48 +0.7
37,667 - BACOVA_00255 0.48 -0.9
37,667 - BACOVA_00255 0.48 +3.7
37,672 - BACOVA_00255 0.49 -1.2
37,672 - BACOVA_00255 0.49 -1.9
37,672 - BACOVA_00255 0.49 -0.9
37,767 + BACOVA_00255 0.59 -0.8
37,833 - BACOVA_00255 0.67 +0.9
37,846 - BACOVA_00255 0.68 +1.3
37,850 + BACOVA_00255 0.69 -0.7
37,850 + BACOVA_00255 0.69 -2.0
37,857 + BACOVA_00255 0.69 -1.6
37,857 + BACOVA_00255 0.69 -0.5
38,033 + BACOVA_00255 0.89 +2.2
38,057 - +0.1
38,057 - +0.3
38,063 + -2.6
38,080 - -1.7
38,096 - -1.4
38,096 - -1.4
38,111 + +1.3
38,115 + -0.7
38,192 + -0.3
38,197 - -1.2
38,254 - -1.0
38,254 - -0.3
38,261 + -1.0
38,261 + -1.5
38,270 + -1.0
38,271 - +0.7
38,271 - -0.8
38,278 - +0.7
38,305 - -0.6
38,348 - -1.2
38,404 + +0.3
38,405 - -0.3
38,405 - -0.3
38,405 - -1.0
38,406 + +0.7
38,408 + +0.7
38,408 + +1.4
38,408 + -0.2
38,409 - -0.2
38,409 - +0.3
38,410 + -0.7
38,410 + -0.2
38,410 + +0.7
38,410 + -0.8
38,410 + -1.4
38,410 + -0.5
38,411 - +1.4
38,415 + +0.4
38,416 - +0.4
38,418 - -1.2
38,465 - -1.4
38,527 - BACOVA_00256 0.12 -1.0
38,537 + BACOVA_00256 0.13 -0.0
38,603 + BACOVA_00256 0.16 -2.7
38,674 + BACOVA_00256 0.20 -0.3
38,706 - BACOVA_00256 0.22 -0.8
38,838 - BACOVA_00256 0.28 +0.5
38,852 - BACOVA_00256 0.29 -0.6
38,894 + BACOVA_00256 0.31 +0.3
38,970 - BACOVA_00256 0.35 +0.8
39,008 + BACOVA_00256 0.37 -1.3
39,192 - BACOVA_00256 0.46 +0.9
39,201 - BACOVA_00256 0.46 -0.2
39,201 - BACOVA_00256 0.46 +0.8
39,253 + BACOVA_00256 0.49 +0.1
39,275 + BACOVA_00256 0.50 -2.2
39,276 - BACOVA_00256 0.50 +0.1
39,277 + BACOVA_00256 0.50 -2.0
39,303 - BACOVA_00256 0.52 -1.1
39,393 + BACOVA_00256 0.56 -1.5
39,411 - BACOVA_00256 0.57 +2.8
39,460 + BACOVA_00256 0.59 -0.7
39,461 - BACOVA_00256 0.60 -2.1
39,598 + BACOVA_00256 0.66 -2.1
39,599 - BACOVA_00256 0.66 -1.0
39,628 + BACOVA_00256 0.68 -0.0
39,629 - BACOVA_00256 0.68 -0.5
39,666 - BACOVA_00256 0.70 +0.3
39,994 - BACOVA_00256 0.86 +1.3
39,994 - BACOVA_00256 0.86 +2.0
40,023 - BACOVA_00256 0.88 -1.0
40,146 - -0.6
40,186 + -1.9
40,187 - -1.3
40,187 - +2.8
40,187 - -1.0
40,187 - -0.7
40,265 + -1.0
40,272 + -0.9
40,272 + -0.3
40,289 + +0.8
40,359 + -1.3
40,360 - -1.2
40,360 - -2.4
40,360 - +0.4
40,360 - +0.6
40,365 + -1.4
40,385 + -2.0
40,385 + +1.5
40,388 + -0.9
40,410 + -2.3
40,446 - BACOVA_00257 0.12 +0.3
40,453 - BACOVA_00257 0.12 -0.7
40,453 - BACOVA_00257 0.12 -0.2
40,515 + BACOVA_00257 0.17 -0.3
40,516 - BACOVA_00257 0.17 +1.4
40,643 + BACOVA_00257 0.26 -2.4
40,644 - BACOVA_00257 0.26 +0.9
40,644 - BACOVA_00257 0.26 +0.6
40,644 - BACOVA_00257 0.26 +0.0
40,644 - BACOVA_00257 0.26 -1.0
40,647 + BACOVA_00257 0.27 +0.3
40,647 + BACOVA_00257 0.27 +1.5
40,647 + BACOVA_00257 0.27 -1.3
40,648 - BACOVA_00257 0.27 -1.8
40,648 - BACOVA_00257 0.27 -1.9
40,648 - BACOVA_00257 0.27 -1.8
40,648 - BACOVA_00257 0.27 +2.3
40,707 + BACOVA_00257 0.31 -0.7
40,707 + BACOVA_00257 0.31 +1.9
40,800 + BACOVA_00257 0.38 +0.5
40,800 + BACOVA_00257 0.38 +0.3
40,801 - BACOVA_00257 0.38 +3.0
40,801 - BACOVA_00257 0.38 -1.1
40,802 + BACOVA_00257 0.38 +0.3
40,802 + BACOVA_00257 0.38 -0.5
40,802 + BACOVA_00257 0.38 -1.3
40,802 + BACOVA_00257 0.38 -1.1
40,803 - BACOVA_00257 0.38 -0.8
40,803 - BACOVA_00257 0.38 -1.1
40,806 + BACOVA_00257 0.38 -0.5
40,827 + BACOVA_00257 0.40 -1.8
40,828 - BACOVA_00257 0.40 -1.3
40,828 - BACOVA_00257 0.40 -1.6
40,830 - BACOVA_00257 0.40 +0.2
40,830 - BACOVA_00257 0.40 +0.1
40,861 - BACOVA_00257 0.42 -1.5
40,935 + BACOVA_00257 0.47 +1.0
40,936 - BACOVA_00257 0.48 -1.9
40,939 - BACOVA_00257 0.48 -0.6
40,941 + BACOVA_00257 0.48 -2.2
40,979 - BACOVA_00257 0.51 -0.0
40,980 - BACOVA_00257 0.51 -2.0
40,983 + BACOVA_00257 0.51 -0.4
40,984 - BACOVA_00257 0.51 +0.7
41,115 + BACOVA_00257 0.61 -0.3
41,179 + BACOVA_00257 0.65 -0.6
41,180 - BACOVA_00257 0.65 -0.1
41,184 + BACOVA_00257 0.66 -0.7
41,184 + BACOVA_00257 0.66 -1.6
41,184 + BACOVA_00257 0.66 +0.6
41,185 - BACOVA_00257 0.66 +0.0
41,185 - BACOVA_00257 0.66 -0.7
41,185 - BACOVA_00257 0.66 -0.5
41,217 + BACOVA_00257 0.68 -0.5
41,218 - BACOVA_00257 0.68 -0.2
41,231 + BACOVA_00257 0.69 -0.9

Or see this region's nucleotide sequence