Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_00131

Experiment: amylopectin from maize 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_00129 and BACOVA_00130 are separated by 15 nucleotidesBACOVA_00130 and BACOVA_00131 are separated by 33 nucleotidesBACOVA_00131 and BACOVA_00132 are separated by 154 nucleotidesBACOVA_00132 and BACOVA_00133 are separated by 248 nucleotides BACOVA_00129: BACOVA_00129 - hypothetical protein, at 175,396 to 176,049 _00129 BACOVA_00130: BACOVA_00130 - hypothetical protein, at 176,065 to 176,670 _00130 BACOVA_00131: BACOVA_00131 - transporter, MotA/TolQ/ExbB proton channel family protein, at 176,704 to 177,501 _00131 BACOVA_00132: BACOVA_00132 - hypothetical protein, at 177,656 to 178,093 _00132 BACOVA_00133: BACOVA_00133 - 5S ribosomal RNA, at 178,342 to 178,452 _00133 Position (kb) 176 177 178Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 175.752 kb on + strand, within BACOVA_00129at 175.753 kb on - strand, within BACOVA_00129at 175.753 kb on - strand, within BACOVA_00129at 175.754 kb on + strand, within BACOVA_00129at 175.755 kb on - strand, within BACOVA_00129at 175.763 kb on + strand, within BACOVA_00129at 175.767 kb on + strand, within BACOVA_00129at 175.767 kb on + strand, within BACOVA_00129at 175.768 kb on - strand, within BACOVA_00129at 175.787 kb on + strand, within BACOVA_00129at 175.798 kb on - strand, within BACOVA_00129at 175.814 kb on - strand, within BACOVA_00129at 175.819 kb on - strand, within BACOVA_00129at 175.819 kb on - strand, within BACOVA_00129at 175.819 kb on - strand, within BACOVA_00129at 175.842 kb on + strand, within BACOVA_00129at 175.843 kb on - strand, within BACOVA_00129at 175.843 kb on - strand, within BACOVA_00129at 175.861 kb on + strand, within BACOVA_00129at 175.863 kb on + strand, within BACOVA_00129at 175.864 kb on - strand, within BACOVA_00129at 175.876 kb on - strand, within BACOVA_00129at 175.888 kb on + strand, within BACOVA_00129at 175.889 kb on - strand, within BACOVA_00129at 175.971 kb on + strand, within BACOVA_00129at 175.972 kb on - strand, within BACOVA_00129at 176.052 kb on + strandat 176.094 kb on + strandat 176.190 kb on + strand, within BACOVA_00130at 176.190 kb on + strand, within BACOVA_00130at 176.191 kb on - strand, within BACOVA_00130at 176.212 kb on - strand, within BACOVA_00130at 176.220 kb on + strand, within BACOVA_00130at 176.220 kb on + strand, within BACOVA_00130at 176.235 kb on + strand, within BACOVA_00130at 176.265 kb on + strand, within BACOVA_00130at 176.335 kb on - strand, within BACOVA_00130at 176.338 kb on + strand, within BACOVA_00130at 176.339 kb on - strand, within BACOVA_00130at 176.361 kb on + strand, within BACOVA_00130at 176.392 kb on - strand, within BACOVA_00130at 176.400 kb on - strand, within BACOVA_00130at 176.434 kb on - strand, within BACOVA_00130at 176.434 kb on - strand, within BACOVA_00130at 176.458 kb on - strand, within BACOVA_00130at 176.461 kb on + strand, within BACOVA_00130at 176.495 kb on - strand, within BACOVA_00130at 176.548 kb on + strand, within BACOVA_00130at 176.602 kb on + strand, within BACOVA_00130at 176.603 kb on - strand, within BACOVA_00130at 176.603 kb on - strand, within BACOVA_00130at 176.603 kb on - strand, within BACOVA_00130at 176.619 kb on + strandat 176.628 kb on + strandat 176.628 kb on + strandat 176.628 kb on + strandat 176.632 kb on + strandat 176.633 kb on - strandat 176.681 kb on - strandat 176.706 kb on - strandat 176.712 kb on + strandat 176.789 kb on + strand, within BACOVA_00131at 176.789 kb on + strand, within BACOVA_00131at 176.790 kb on - strand, within BACOVA_00131at 176.795 kb on + strand, within BACOVA_00131at 176.796 kb on - strand, within BACOVA_00131at 176.926 kb on - strand, within BACOVA_00131at 176.968 kb on - strand, within BACOVA_00131at 176.968 kb on - strand, within BACOVA_00131at 176.974 kb on - strand, within BACOVA_00131at 176.977 kb on - strand, within BACOVA_00131at 177.006 kb on + strand, within BACOVA_00131at 177.070 kb on - strand, within BACOVA_00131at 177.102 kb on - strand, within BACOVA_00131at 177.105 kb on + strand, within BACOVA_00131at 177.106 kb on - strand, within BACOVA_00131at 177.122 kb on - strand, within BACOVA_00131at 177.125 kb on - strand, within BACOVA_00131at 177.211 kb on + strand, within BACOVA_00131at 177.219 kb on + strand, within BACOVA_00131at 177.307 kb on - strand, within BACOVA_00131at 177.309 kb on + strand, within BACOVA_00131at 177.310 kb on - strand, within BACOVA_00131at 177.314 kb on - strand, within BACOVA_00131at 177.322 kb on - strand, within BACOVA_00131at 177.322 kb on - strand, within BACOVA_00131at 177.332 kb on + strand, within BACOVA_00131at 177.336 kb on + strand, within BACOVA_00131at 177.382 kb on - strand, within BACOVA_00131at 177.400 kb on + strand, within BACOVA_00131at 177.417 kb on + strand, within BACOVA_00131at 177.421 kb on + strand, within BACOVA_00131at 177.422 kb on - strandat 177.427 kb on + strandat 177.434 kb on - strandat 177.448 kb on + strandat 177.473 kb on - strandat 177.518 kb on - strandat 177.535 kb on + strandat 177.535 kb on + strandat 177.539 kb on + strandat 177.539 kb on + strandat 177.575 kb on + strandat 177.591 kb on + strandat 177.617 kb on - strandat 177.623 kb on + strandat 177.623 kb on + strandat 177.658 kb on - strandat 177.661 kb on + strandat 177.661 kb on + strandat 177.662 kb on - strandat 177.662 kb on - strandat 177.675 kb on - strandat 177.687 kb on + strandat 177.687 kb on + strandat 177.704 kb on - strand, within BACOVA_00132at 177.704 kb on - strand, within BACOVA_00132at 177.711 kb on + strand, within BACOVA_00132at 177.711 kb on + strand, within BACOVA_00132at 177.711 kb on + strand, within BACOVA_00132at 177.743 kb on - strand, within BACOVA_00132at 177.753 kb on - strand, within BACOVA_00132at 177.759 kb on - strand, within BACOVA_00132at 177.773 kb on + strand, within BACOVA_00132at 177.774 kb on - strand, within BACOVA_00132at 177.829 kb on + strand, within BACOVA_00132at 177.844 kb on + strand, within BACOVA_00132at 177.845 kb on - strand, within BACOVA_00132at 177.871 kb on + strand, within BACOVA_00132at 177.872 kb on - strand, within BACOVA_00132at 177.918 kb on + strand, within BACOVA_00132at 177.918 kb on + strand, within BACOVA_00132at 177.919 kb on - strand, within BACOVA_00132at 177.919 kb on - strand, within BACOVA_00132at 177.923 kb on - strand, within BACOVA_00132at 177.938 kb on + strand, within BACOVA_00132at 177.939 kb on - strand, within BACOVA_00132at 178.047 kb on - strand, within BACOVA_00132at 178.047 kb on - strand, within BACOVA_00132at 178.047 kb on - strand, within BACOVA_00132at 178.071 kb on - strandat 178.097 kb on - strandat 178.124 kb on - strandat 178.155 kb on - strandat 178.156 kb on + strandat 178.157 kb on - strandat 178.157 kb on - strandat 178.157 kb on - strandat 178.189 kb on - strandat 178.195 kb on + strandat 178.205 kb on - strandat 178.223 kb on - strandat 178.250 kb on - strandat 178.280 kb on + strandat 178.280 kb on + strandat 178.281 kb on - strandat 178.281 kb on - strandat 178.315 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction amylopectin from maize 2.5 mg/ml (C)
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175,752 + BACOVA_00129 0.54 -1.6
175,753 - BACOVA_00129 0.55 -2.2
175,753 - BACOVA_00129 0.55 -0.2
175,754 + BACOVA_00129 0.55 -2.3
175,755 - BACOVA_00129 0.55 +0.8
175,763 + BACOVA_00129 0.56 +1.7
175,767 + BACOVA_00129 0.57 -1.1
175,767 + BACOVA_00129 0.57 +1.0
175,768 - BACOVA_00129 0.57 -0.9
175,787 + BACOVA_00129 0.60 -0.0
175,798 - BACOVA_00129 0.61 -0.8
175,814 - BACOVA_00129 0.64 +0.8
175,819 - BACOVA_00129 0.65 -2.4
175,819 - BACOVA_00129 0.65 -0.4
175,819 - BACOVA_00129 0.65 -1.5
175,842 + BACOVA_00129 0.68 +0.4
175,843 - BACOVA_00129 0.68 +0.2
175,843 - BACOVA_00129 0.68 -4.3
175,861 + BACOVA_00129 0.71 -0.2
175,863 + BACOVA_00129 0.71 +0.3
175,864 - BACOVA_00129 0.72 -0.7
175,876 - BACOVA_00129 0.73 -0.2
175,888 + BACOVA_00129 0.75 -1.4
175,889 - BACOVA_00129 0.75 -1.4
175,971 + BACOVA_00129 0.88 +1.9
175,972 - BACOVA_00129 0.88 +1.3
176,052 + +0.3
176,094 + +1.2
176,190 + BACOVA_00130 0.21 -1.2
176,190 + BACOVA_00130 0.21 -2.3
176,191 - BACOVA_00130 0.21 -2.3
176,212 - BACOVA_00130 0.24 -3.4
176,220 + BACOVA_00130 0.26 -0.8
176,220 + BACOVA_00130 0.26 -1.3
176,235 + BACOVA_00130 0.28 +2.3
176,265 + BACOVA_00130 0.33 -1.5
176,335 - BACOVA_00130 0.45 -2.1
176,338 + BACOVA_00130 0.45 +1.4
176,339 - BACOVA_00130 0.45 -0.1
176,361 + BACOVA_00130 0.49 -1.2
176,392 - BACOVA_00130 0.54 -1.7
176,400 - BACOVA_00130 0.55 -1.3
176,434 - BACOVA_00130 0.61 -3.4
176,434 - BACOVA_00130 0.61 -1.0
176,458 - BACOVA_00130 0.65 +0.0
176,461 + BACOVA_00130 0.65 -0.2
176,495 - BACOVA_00130 0.71 -1.8
176,548 + BACOVA_00130 0.80 +1.3
176,602 + BACOVA_00130 0.89 +0.5
176,603 - BACOVA_00130 0.89 -0.2
176,603 - BACOVA_00130 0.89 -1.0
176,603 - BACOVA_00130 0.89 -2.6
176,619 + +0.3
176,628 + -1.1
176,628 + +3.7
176,628 + +0.8
176,632 + +0.0
176,633 - -2.3
176,681 - -1.8
176,706 - -0.6
176,712 + -2.1
176,789 + BACOVA_00131 0.11 +1.5
176,789 + BACOVA_00131 0.11 +2.3
176,790 - BACOVA_00131 0.11 -1.2
176,795 + BACOVA_00131 0.11 -1.2
176,796 - BACOVA_00131 0.12 +2.1
176,926 - BACOVA_00131 0.28 -1.4
176,968 - BACOVA_00131 0.33 -0.4
176,968 - BACOVA_00131 0.33 +0.8
176,974 - BACOVA_00131 0.34 -1.0
176,977 - BACOVA_00131 0.34 -1.9
177,006 + BACOVA_00131 0.38 -0.3
177,070 - BACOVA_00131 0.46 -0.4
177,102 - BACOVA_00131 0.50 -0.2
177,105 + BACOVA_00131 0.50 +0.0
177,106 - BACOVA_00131 0.50 +0.3
177,122 - BACOVA_00131 0.52 -0.4
177,125 - BACOVA_00131 0.53 -0.8
177,211 + BACOVA_00131 0.64 -1.2
177,219 + BACOVA_00131 0.65 +1.8
177,307 - BACOVA_00131 0.76 +0.1
177,309 + BACOVA_00131 0.76 +2.9
177,310 - BACOVA_00131 0.76 +0.8
177,314 - BACOVA_00131 0.76 +0.2
177,322 - BACOVA_00131 0.77 -0.8
177,322 - BACOVA_00131 0.77 -1.1
177,332 + BACOVA_00131 0.79 +0.3
177,336 + BACOVA_00131 0.79 -0.8
177,382 - BACOVA_00131 0.85 +1.3
177,400 + BACOVA_00131 0.87 -1.3
177,417 + BACOVA_00131 0.89 -1.8
177,421 + BACOVA_00131 0.90 +2.1
177,422 - +0.5
177,427 + +0.5
177,434 - -1.4
177,448 + -0.7
177,473 - -1.9
177,518 - -2.5
177,535 + -0.5
177,535 + -2.1
177,539 + +2.3
177,539 + -0.8
177,575 + -1.3
177,591 + -1.3
177,617 - -2.2
177,623 + +2.1
177,623 + -0.7
177,658 - -0.7
177,661 + +0.7
177,661 + +1.0
177,662 - -3.5
177,662 - +1.3
177,675 - -0.7
177,687 + +0.0
177,687 + -0.4
177,704 - BACOVA_00132 0.11 -0.4
177,704 - BACOVA_00132 0.11 +1.6
177,711 + BACOVA_00132 0.13 -1.4
177,711 + BACOVA_00132 0.13 -1.3
177,711 + BACOVA_00132 0.13 +0.0
177,743 - BACOVA_00132 0.20 +0.7
177,753 - BACOVA_00132 0.22 -2.1
177,759 - BACOVA_00132 0.24 -0.3
177,773 + BACOVA_00132 0.27 -0.3
177,774 - BACOVA_00132 0.27 -2.0
177,829 + BACOVA_00132 0.39 +0.0
177,844 + BACOVA_00132 0.43 -0.9
177,845 - BACOVA_00132 0.43 -0.9
177,871 + BACOVA_00132 0.49 -0.9
177,872 - BACOVA_00132 0.49 -1.3
177,918 + BACOVA_00132 0.60 -1.0
177,918 + BACOVA_00132 0.60 -1.6
177,919 - BACOVA_00132 0.60 +0.7
177,919 - BACOVA_00132 0.60 +1.5
177,923 - BACOVA_00132 0.61 -3.1
177,938 + BACOVA_00132 0.64 +1.0
177,939 - BACOVA_00132 0.65 +0.3
178,047 - BACOVA_00132 0.89 -1.9
178,047 - BACOVA_00132 0.89 +0.5
178,047 - BACOVA_00132 0.89 -0.7
178,071 - -0.4
178,097 - +2.5
178,124 - +0.1
178,155 - +0.7
178,156 + -1.0
178,157 - +0.5
178,157 - -0.8
178,157 - -1.6
178,189 - -1.2
178,195 + -0.3
178,205 - -1.3
178,223 - -0.6
178,250 - -1.3
178,280 + +2.3
178,280 + -1.0
178,281 - -1.1
178,281 - +0.4
178,315 - -0.3

Or see this region's nucleotide sequence