Strain Fitness in Erwinia amylovora T8 around OLJFJH_06130

Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_06125 and OLJFJH_06130 are separated by 92 nucleotidesOLJFJH_06130 and OLJFJH_06135 are separated by 50 nucleotidesOLJFJH_06135 and OLJFJH_06140 are separated by 134 nucleotides OLJFJH_06125: OLJFJH_06125 - argininosuccinate synthase, at 1,237,267 to 1,238,481 _06125 OLJFJH_06130: OLJFJH_06130 - argininosuccinate lyase, at 1,238,574 to 1,239,947 _06130 OLJFJH_06135: OLJFJH_06135 - glutathione peroxidase, at 1,239,998 to 1,240,729 _06135 OLJFJH_06140: OLJFJH_06140 - DNA-binding transcriptional regulator OxyR, at 1,240,864 to 1,241,769 _06140 Position (kb) 1238 1239 1240Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 1237.589 kb on + strand, within OLJFJH_06125at 1237.590 kb on - strand, within OLJFJH_06125at 1237.590 kb on - strand, within OLJFJH_06125at 1237.675 kb on + strand, within OLJFJH_06125at 1237.675 kb on + strand, within OLJFJH_06125at 1237.675 kb on + strand, within OLJFJH_06125at 1237.676 kb on - strand, within OLJFJH_06125at 1237.676 kb on - strand, within OLJFJH_06125at 1238.082 kb on + strand, within OLJFJH_06125at 1238.083 kb on - strand, within OLJFJH_06125at 1238.122 kb on - strand, within OLJFJH_06125at 1238.175 kb on + strand, within OLJFJH_06125at 1238.175 kb on + strand, within OLJFJH_06125at 1238.176 kb on - strand, within OLJFJH_06125at 1238.209 kb on + strand, within OLJFJH_06125at 1238.209 kb on + strand, within OLJFJH_06125at 1238.209 kb on + strand, within OLJFJH_06125at 1238.209 kb on + strand, within OLJFJH_06125at 1238.209 kb on + strand, within OLJFJH_06125at 1238.209 kb on + strand, within OLJFJH_06125at 1238.210 kb on - strand, within OLJFJH_06125at 1238.218 kb on + strand, within OLJFJH_06125at 1238.219 kb on - strand, within OLJFJH_06125at 1238.315 kb on - strand, within OLJFJH_06125at 1238.315 kb on - strand, within OLJFJH_06125at 1238.315 kb on - strand, within OLJFJH_06125at 1238.362 kb on + strandat 1238.401 kb on + strandat 1238.402 kb on - strandat 1238.427 kb on + strandat 1238.428 kb on - strandat 1238.518 kb on + strandat 1238.518 kb on + strandat 1238.519 kb on - strandat 1238.520 kb on + strandat 1238.521 kb on - strandat 1238.521 kb on - strandat 1238.521 kb on - strandat 1238.548 kb on - strandat 1238.554 kb on + strandat 1238.555 kb on - strandat 1238.555 kb on - strandat 1238.559 kb on + strandat 1238.559 kb on + strandat 1238.719 kb on + strand, within OLJFJH_06130at 1238.719 kb on + strand, within OLJFJH_06130at 1238.719 kb on + strand, within OLJFJH_06130at 1238.720 kb on - strand, within OLJFJH_06130at 1238.720 kb on - strand, within OLJFJH_06130at 1238.720 kb on - strand, within OLJFJH_06130at 1238.720 kb on - strand, within OLJFJH_06130at 1238.822 kb on + strand, within OLJFJH_06130at 1238.822 kb on + strand, within OLJFJH_06130at 1238.822 kb on + strand, within OLJFJH_06130at 1238.828 kb on + strand, within OLJFJH_06130at 1238.828 kb on + strand, within OLJFJH_06130at 1238.829 kb on - strand, within OLJFJH_06130at 1238.829 kb on - strand, within OLJFJH_06130at 1239.036 kb on - strand, within OLJFJH_06130at 1239.088 kb on - strand, within OLJFJH_06130at 1239.259 kb on + strand, within OLJFJH_06130at 1239.469 kb on + strand, within OLJFJH_06130at 1239.522 kb on + strand, within OLJFJH_06130at 1239.522 kb on + strand, within OLJFJH_06130at 1239.522 kb on + strand, within OLJFJH_06130at 1239.522 kb on + strand, within OLJFJH_06130at 1239.523 kb on - strand, within OLJFJH_06130at 1239.525 kb on - strand, within OLJFJH_06130at 1239.533 kb on + strand, within OLJFJH_06130at 1239.534 kb on - strand, within OLJFJH_06130at 1239.534 kb on - strand, within OLJFJH_06130at 1239.642 kb on - strand, within OLJFJH_06130at 1239.664 kb on - strand, within OLJFJH_06130at 1239.690 kb on + strand, within OLJFJH_06130at 1239.690 kb on + strand, within OLJFJH_06130at 1239.731 kb on + strand, within OLJFJH_06130at 1239.731 kb on + strand, within OLJFJH_06130at 1239.732 kb on - strand, within OLJFJH_06130at 1239.732 kb on - strand, within OLJFJH_06130at 1239.732 kb on - strand, within OLJFJH_06130at 1239.732 kb on - strand, within OLJFJH_06130at 1239.732 kb on - strand, within OLJFJH_06130at 1239.732 kb on - strand, within OLJFJH_06130at 1239.733 kb on + strand, within OLJFJH_06130at 1239.733 kb on + strand, within OLJFJH_06130at 1239.733 kb on + strand, within OLJFJH_06130at 1239.733 kb on + strand, within OLJFJH_06130at 1239.733 kb on + strand, within OLJFJH_06130at 1239.733 kb on + strand, within OLJFJH_06130at 1239.733 kb on + strand, within OLJFJH_06130at 1239.733 kb on + strand, within OLJFJH_06130at 1239.733 kb on + strand, within OLJFJH_06130at 1239.734 kb on - strand, within OLJFJH_06130at 1239.734 kb on - strand, within OLJFJH_06130at 1239.734 kb on - strand, within OLJFJH_06130at 1239.734 kb on - strand, within OLJFJH_06130at 1239.734 kb on - strand, within OLJFJH_06130at 1239.734 kb on - strand, within OLJFJH_06130at 1239.734 kb on - strand, within OLJFJH_06130at 1239.734 kb on - strand, within OLJFJH_06130at 1239.734 kb on - strand, within OLJFJH_06130at 1240.000 kb on - strandat 1240.019 kb on + strandat 1240.020 kb on - strandat 1240.039 kb on + strandat 1240.174 kb on + strand, within OLJFJH_06135at 1240.174 kb on + strand, within OLJFJH_06135at 1240.174 kb on + strand, within OLJFJH_06135at 1240.175 kb on - strand, within OLJFJH_06135at 1240.228 kb on + strand, within OLJFJH_06135at 1240.228 kb on + strand, within OLJFJH_06135at 1240.228 kb on + strand, within OLJFJH_06135at 1240.228 kb on + strand, within OLJFJH_06135at 1240.229 kb on - strand, within OLJFJH_06135at 1240.229 kb on - strand, within OLJFJH_06135at 1240.229 kb on - strand, within OLJFJH_06135at 1240.229 kb on - strand, within OLJFJH_06135at 1240.229 kb on - strand, within OLJFJH_06135at 1240.230 kb on + strand, within OLJFJH_06135at 1240.231 kb on - strand, within OLJFJH_06135at 1240.231 kb on - strand, within OLJFJH_06135at 1240.246 kb on - strand, within OLJFJH_06135at 1240.441 kb on + strand, within OLJFJH_06135at 1240.442 kb on - strand, within OLJFJH_06135at 1240.442 kb on - strand, within OLJFJH_06135at 1240.555 kb on + strand, within OLJFJH_06135at 1240.557 kb on + strand, within OLJFJH_06135at 1240.585 kb on + strand, within OLJFJH_06135at 1240.592 kb on - strand, within OLJFJH_06135at 1240.708 kb on + strandat 1240.708 kb on + strandat 1240.729 kb on + strandat 1240.730 kb on - strandat 1240.730 kb on - strandat 1240.730 kb on - strandat 1240.730 kb on - strandat 1240.764 kb on + strandat 1240.764 kb on + strandat 1240.764 kb on + strandat 1240.764 kb on + strandat 1240.782 kb on + strandat 1240.782 kb on + strandat 1240.783 kb on - strandat 1240.783 kb on - strandat 1240.783 kb on - strandat 1240.783 kb on - strandat 1240.783 kb on - strandat 1240.785 kb on + strandat 1240.785 kb on + strandat 1240.785 kb on + strandat 1240.786 kb on - strandat 1240.861 kb on - strandat 1240.861 kb on - strandat 1240.870 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-6
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1,237,589 + OLJFJH_06125 0.27 -0.8
1,237,590 - OLJFJH_06125 0.27 -4.5
1,237,590 - OLJFJH_06125 0.27 -5.0
1,237,675 + OLJFJH_06125 0.34 -4.1
1,237,675 + OLJFJH_06125 0.34 +1.8
1,237,675 + OLJFJH_06125 0.34 -3.1
1,237,676 - OLJFJH_06125 0.34 -2.7
1,237,676 - OLJFJH_06125 0.34 -2.8
1,238,082 + OLJFJH_06125 0.67 -3.9
1,238,083 - OLJFJH_06125 0.67 -5.5
1,238,122 - OLJFJH_06125 0.70 -1.9
1,238,175 + OLJFJH_06125 0.75 -0.2
1,238,175 + OLJFJH_06125 0.75 +0.2
1,238,176 - OLJFJH_06125 0.75 -2.4
1,238,209 + OLJFJH_06125 0.78 -2.1
1,238,209 + OLJFJH_06125 0.78 -3.2
1,238,209 + OLJFJH_06125 0.78 -3.6
1,238,209 + OLJFJH_06125 0.78 -2.2
1,238,209 + OLJFJH_06125 0.78 -3.7
1,238,209 + OLJFJH_06125 0.78 -1.4
1,238,210 - OLJFJH_06125 0.78 -3.3
1,238,218 + OLJFJH_06125 0.78 -2.2
1,238,219 - OLJFJH_06125 0.78 -3.9
1,238,315 - OLJFJH_06125 0.86 -4.0
1,238,315 - OLJFJH_06125 0.86 -0.8
1,238,315 - OLJFJH_06125 0.86 -4.3
1,238,362 + -3.6
1,238,401 + -3.8
1,238,402 - -3.6
1,238,427 + -2.8
1,238,428 - -3.6
1,238,518 + +0.2
1,238,518 + +0.4
1,238,519 - -3.7
1,238,520 + -0.3
1,238,521 - -3.1
1,238,521 - -1.2
1,238,521 - -1.8
1,238,548 - -1.8
1,238,554 + -3.0
1,238,555 - -3.9
1,238,555 - -3.6
1,238,559 + +0.2
1,238,559 + +3.1
1,238,719 + OLJFJH_06130 0.11 -3.9
1,238,719 + OLJFJH_06130 0.11 -4.3
1,238,719 + OLJFJH_06130 0.11 -1.0
1,238,720 - OLJFJH_06130 0.11 -1.9
1,238,720 - OLJFJH_06130 0.11 -4.4
1,238,720 - OLJFJH_06130 0.11 -3.9
1,238,720 - OLJFJH_06130 0.11 -2.6
1,238,822 + OLJFJH_06130 0.18 -4.1
1,238,822 + OLJFJH_06130 0.18 -3.2
1,238,822 + OLJFJH_06130 0.18 -1.0
1,238,828 + OLJFJH_06130 0.18 -2.6
1,238,828 + OLJFJH_06130 0.18 -3.0
1,238,829 - OLJFJH_06130 0.19 -3.0
1,238,829 - OLJFJH_06130 0.19 -4.8
1,239,036 - OLJFJH_06130 0.34 -3.4
1,239,088 - OLJFJH_06130 0.37 -1.2
1,239,259 + OLJFJH_06130 0.50 -3.5
1,239,469 + OLJFJH_06130 0.65 -3.3
1,239,522 + OLJFJH_06130 0.69 -3.3
1,239,522 + OLJFJH_06130 0.69 -1.7
1,239,522 + OLJFJH_06130 0.69 -4.0
1,239,522 + OLJFJH_06130 0.69 -3.2
1,239,523 - OLJFJH_06130 0.69 -2.5
1,239,525 - OLJFJH_06130 0.69 -3.5
1,239,533 + OLJFJH_06130 0.70 -3.4
1,239,534 - OLJFJH_06130 0.70 -2.9
1,239,534 - OLJFJH_06130 0.70 -2.5
1,239,642 - OLJFJH_06130 0.78 -1.6
1,239,664 - OLJFJH_06130 0.79 -3.6
1,239,690 + OLJFJH_06130 0.81 -3.6
1,239,690 + OLJFJH_06130 0.81 +0.4
1,239,731 + OLJFJH_06130 0.84 -5.6
1,239,731 + OLJFJH_06130 0.84 -3.6
1,239,732 - OLJFJH_06130 0.84 -4.1
1,239,732 - OLJFJH_06130 0.84 -3.3
1,239,732 - OLJFJH_06130 0.84 -3.7
1,239,732 - OLJFJH_06130 0.84 -3.5
1,239,732 - OLJFJH_06130 0.84 -1.0
1,239,732 - OLJFJH_06130 0.84 -5.4
1,239,733 + OLJFJH_06130 0.84 -2.9
1,239,733 + OLJFJH_06130 0.84 -3.0
1,239,733 + OLJFJH_06130 0.84 -3.2
1,239,733 + OLJFJH_06130 0.84 -2.4
1,239,733 + OLJFJH_06130 0.84 -3.6
1,239,733 + OLJFJH_06130 0.84 -4.3
1,239,733 + OLJFJH_06130 0.84 -4.3
1,239,733 + OLJFJH_06130 0.84 -3.3
1,239,733 + OLJFJH_06130 0.84 -1.0
1,239,734 - OLJFJH_06130 0.84 -3.4
1,239,734 - OLJFJH_06130 0.84 -3.0
1,239,734 - OLJFJH_06130 0.84 -3.8
1,239,734 - OLJFJH_06130 0.84 -2.1
1,239,734 - OLJFJH_06130 0.84 -3.1
1,239,734 - OLJFJH_06130 0.84 -2.9
1,239,734 - OLJFJH_06130 0.84 -3.7
1,239,734 - OLJFJH_06130 0.84 -1.9
1,239,734 - OLJFJH_06130 0.84 -2.8
1,240,000 - +1.2
1,240,019 + +0.5
1,240,020 - -0.2
1,240,039 + -0.5
1,240,174 + OLJFJH_06135 0.24 +0.6
1,240,174 + OLJFJH_06135 0.24 +0.3
1,240,174 + OLJFJH_06135 0.24 +0.3
1,240,175 - OLJFJH_06135 0.24 -0.6
1,240,228 + OLJFJH_06135 0.31 -1.4
1,240,228 + OLJFJH_06135 0.31 +1.3
1,240,228 + OLJFJH_06135 0.31 -0.5
1,240,228 + OLJFJH_06135 0.31 -0.8
1,240,229 - OLJFJH_06135 0.32 +1.0
1,240,229 - OLJFJH_06135 0.32 +3.0
1,240,229 - OLJFJH_06135 0.32 +0.2
1,240,229 - OLJFJH_06135 0.32 +0.3
1,240,229 - OLJFJH_06135 0.32 +0.1
1,240,230 + OLJFJH_06135 0.32 +0.7
1,240,231 - OLJFJH_06135 0.32 -0.0
1,240,231 - OLJFJH_06135 0.32 -0.2
1,240,246 - OLJFJH_06135 0.34 +1.9
1,240,441 + OLJFJH_06135 0.61 -0.0
1,240,442 - OLJFJH_06135 0.61 +0.2
1,240,442 - OLJFJH_06135 0.61 -0.1
1,240,555 + OLJFJH_06135 0.76 +0.3
1,240,557 + OLJFJH_06135 0.76 -0.2
1,240,585 + OLJFJH_06135 0.80 +0.1
1,240,592 - OLJFJH_06135 0.81 +0.2
1,240,708 + +0.3
1,240,708 + +0.1
1,240,729 + -0.2
1,240,730 - +1.5
1,240,730 - +0.2
1,240,730 - +0.0
1,240,730 - +0.5
1,240,764 + +2.5
1,240,764 + -1.5
1,240,764 + -1.0
1,240,764 + -0.3
1,240,782 + -0.2
1,240,782 + +0.8
1,240,783 - +0.3
1,240,783 - +0.7
1,240,783 - -0.2
1,240,783 - -0.2
1,240,783 - +0.2
1,240,785 + +1.2
1,240,785 + -0.3
1,240,785 + +0.5
1,240,786 - -0.1
1,240,861 - +1.0
1,240,861 - +0.1
1,240,870 - +0.5

Or see this region's nucleotide sequence