Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_05320

Experiment: Glucomannan (konjac) 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_05317 and BACOVA_05319 are separated by 100 nucleotidesBACOVA_05319 and BACOVA_05318 overlap by 72 nucleotidesBACOVA_05318 and BACOVA_05320 overlap by 8 nucleotidesBACOVA_05320 and BACOVA_05321 are separated by 37 nucleotidesBACOVA_05321 and BACOVA_05322 are separated by 35 nucleotides BACOVA_05317: BACOVA_05317 - VirE N-terminal domain protein, at 805,161 to 807,251 _05317 BACOVA_05319: BACOVA_05319 - hypothetical protein, at 807,352 to 807,786 _05319 BACOVA_05318: BACOVA_05318 - hypothetical protein, at 807,715 to 807,888 _05318 BACOVA_05320: BACOVA_05320 - hypothetical protein, at 807,881 to 808,075 _05320 BACOVA_05321: BACOVA_05321 - DNA-binding helix-turn-helix protein, at 808,113 to 808,511 _05321 BACOVA_05322: BACOVA_05322 - DNA-binding helix-turn-helix protein, at 808,547 to 808,954 _05322 Position (kb) 807 808 809Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 806.906 kb on - strand, within BACOVA_05317at 806.910 kb on + strand, within BACOVA_05317at 806.923 kb on - strand, within BACOVA_05317at 806.933 kb on + strand, within BACOVA_05317at 806.933 kb on + strand, within BACOVA_05317at 806.937 kb on + strand, within BACOVA_05317at 806.937 kb on + strand, within BACOVA_05317at 806.937 kb on + strand, within BACOVA_05317at 806.937 kb on + strand, within BACOVA_05317at 806.938 kb on - strand, within BACOVA_05317at 806.938 kb on - strand, within BACOVA_05317at 807.105 kb on - strandat 807.114 kb on - strandat 807.197 kb on + strandat 807.197 kb on + strandat 807.203 kb on + strandat 807.215 kb on + strandat 807.233 kb on - strandat 807.313 kb on + strandat 807.318 kb on + strandat 807.319 kb on - strandat 807.360 kb on + strandat 807.362 kb on + strandat 807.375 kb on - strandat 807.383 kb on + strandat 807.383 kb on + strandat 807.408 kb on - strand, within BACOVA_05319at 807.412 kb on - strand, within BACOVA_05319at 807.429 kb on + strand, within BACOVA_05319at 807.450 kb on + strand, within BACOVA_05319at 807.451 kb on - strand, within BACOVA_05319at 807.471 kb on - strand, within BACOVA_05319at 807.471 kb on - strand, within BACOVA_05319at 807.483 kb on - strand, within BACOVA_05319at 807.509 kb on - strand, within BACOVA_05319at 807.509 kb on - strand, within BACOVA_05319at 807.523 kb on - strand, within BACOVA_05319at 807.539 kb on + strand, within BACOVA_05319at 807.552 kb on + strand, within BACOVA_05319at 807.553 kb on - strand, within BACOVA_05319at 807.658 kb on - strand, within BACOVA_05319at 807.659 kb on + strand, within BACOVA_05319at 807.659 kb on + strand, within BACOVA_05319at 807.676 kb on - strand, within BACOVA_05319at 807.687 kb on + strand, within BACOVA_05319at 807.688 kb on - strand, within BACOVA_05319at 807.692 kb on - strand, within BACOVA_05319at 807.753 kb on - strandat 807.799 kb on - strand, within BACOVA_05318at 807.814 kb on + strand, within BACOVA_05318at 807.814 kb on + strand, within BACOVA_05318at 807.822 kb on + strand, within BACOVA_05318at 807.822 kb on + strand, within BACOVA_05318at 807.823 kb on - strand, within BACOVA_05318at 807.827 kb on - strand, within BACOVA_05318at 807.828 kb on + strand, within BACOVA_05318at 807.828 kb on + strand, within BACOVA_05318at 807.829 kb on - strand, within BACOVA_05318at 807.829 kb on - strand, within BACOVA_05318at 807.862 kb on - strand, within BACOVA_05318at 807.893 kb on + strandat 807.899 kb on + strandat 807.903 kb on + strand, within BACOVA_05320at 807.903 kb on + strand, within BACOVA_05320at 807.931 kb on - strand, within BACOVA_05320at 807.940 kb on + strand, within BACOVA_05320at 807.947 kb on + strand, within BACOVA_05320at 807.947 kb on + strand, within BACOVA_05320at 807.948 kb on - strand, within BACOVA_05320at 807.948 kb on - strand, within BACOVA_05320at 807.950 kb on - strand, within BACOVA_05320at 807.950 kb on - strand, within BACOVA_05320at 807.950 kb on - strand, within BACOVA_05320at 807.952 kb on - strand, within BACOVA_05320at 807.952 kb on - strand, within BACOVA_05320at 807.958 kb on - strand, within BACOVA_05320at 808.000 kb on + strand, within BACOVA_05320at 808.001 kb on - strand, within BACOVA_05320at 808.007 kb on - strand, within BACOVA_05320at 808.055 kb on - strand, within BACOVA_05320at 808.101 kb on + strandat 808.114 kb on + strandat 808.115 kb on - strandat 808.220 kb on + strand, within BACOVA_05321at 808.268 kb on + strand, within BACOVA_05321at 808.269 kb on - strand, within BACOVA_05321at 808.292 kb on - strand, within BACOVA_05321at 808.292 kb on - strand, within BACOVA_05321at 808.313 kb on + strand, within BACOVA_05321at 808.405 kb on - strand, within BACOVA_05321at 808.416 kb on + strand, within BACOVA_05321at 808.434 kb on - strand, within BACOVA_05321at 808.449 kb on + strand, within BACOVA_05321at 808.493 kb on + strandat 808.517 kb on + strandat 808.518 kb on - strandat 808.518 kb on - strandat 808.519 kb on + strandat 808.522 kb on - strandat 808.538 kb on + strandat 808.538 kb on + strandat 808.557 kb on + strandat 808.558 kb on - strandat 808.579 kb on + strandat 808.610 kb on + strand, within BACOVA_05322at 808.610 kb on + strand, within BACOVA_05322at 808.611 kb on - strand, within BACOVA_05322at 808.637 kb on + strand, within BACOVA_05322at 808.638 kb on - strand, within BACOVA_05322at 808.660 kb on + strand, within BACOVA_05322at 808.661 kb on - strand, within BACOVA_05322at 808.661 kb on - strand, within BACOVA_05322at 808.661 kb on - strand, within BACOVA_05322at 808.661 kb on - strand, within BACOVA_05322at 808.661 kb on - strand, within BACOVA_05322at 808.664 kb on - strand, within BACOVA_05322at 808.678 kb on + strand, within BACOVA_05322at 808.691 kb on - strand, within BACOVA_05322at 808.705 kb on + strand, within BACOVA_05322at 808.705 kb on + strand, within BACOVA_05322at 808.706 kb on - strand, within BACOVA_05322at 808.706 kb on - strand, within BACOVA_05322at 808.800 kb on - strand, within BACOVA_05322at 808.800 kb on - strand, within BACOVA_05322at 808.841 kb on + strand, within BACOVA_05322at 808.881 kb on - strand, within BACOVA_05322at 808.884 kb on + strand, within BACOVA_05322at 808.885 kb on - strand, within BACOVA_05322at 808.902 kb on - strand, within BACOVA_05322at 808.957 kb on + strandat 808.976 kb on - strandat 808.976 kb on - strandat 809.006 kb on + strandat 809.047 kb on + strandat 809.056 kb on + strandat 809.073 kb on + strandat 809.074 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucomannan (konjac) 2.5 mg/ml (C)
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806,906 - BACOVA_05317 0.83 +0.4
806,910 + BACOVA_05317 0.84 +1.0
806,923 - BACOVA_05317 0.84 +0.6
806,933 + BACOVA_05317 0.85 -0.5
806,933 + BACOVA_05317 0.85 +0.7
806,937 + BACOVA_05317 0.85 -0.5
806,937 + BACOVA_05317 0.85 -0.5
806,937 + BACOVA_05317 0.85 -0.3
806,937 + BACOVA_05317 0.85 +0.5
806,938 - BACOVA_05317 0.85 -0.6
806,938 - BACOVA_05317 0.85 -0.5
807,105 - +0.7
807,114 - +1.0
807,197 + -0.0
807,197 + +0.4
807,203 + +1.0
807,215 + +0.4
807,233 - +0.7
807,313 + -0.6
807,318 + -1.5
807,319 - +0.5
807,360 + +0.5
807,362 + +1.2
807,375 - -3.7
807,383 + +0.4
807,383 + +0.3
807,408 - BACOVA_05319 0.13 -0.7
807,412 - BACOVA_05319 0.14 +1.4
807,429 + BACOVA_05319 0.18 +0.5
807,450 + BACOVA_05319 0.23 -0.0
807,451 - BACOVA_05319 0.23 -1.8
807,471 - BACOVA_05319 0.27 +1.0
807,471 - BACOVA_05319 0.27 -2.6
807,483 - BACOVA_05319 0.30 +0.2
807,509 - BACOVA_05319 0.36 -0.7
807,509 - BACOVA_05319 0.36 +0.1
807,523 - BACOVA_05319 0.39 -0.7
807,539 + BACOVA_05319 0.43 -0.5
807,552 + BACOVA_05319 0.46 -0.9
807,553 - BACOVA_05319 0.46 +1.0
807,658 - BACOVA_05319 0.70 -0.0
807,659 + BACOVA_05319 0.71 -0.2
807,659 + BACOVA_05319 0.71 +0.5
807,676 - BACOVA_05319 0.74 +0.5
807,687 + BACOVA_05319 0.77 +0.2
807,688 - BACOVA_05319 0.77 +0.7
807,692 - BACOVA_05319 0.78 -1.8
807,753 - -0.5
807,799 - BACOVA_05318 0.48 -0.6
807,814 + BACOVA_05318 0.57 -0.5
807,814 + BACOVA_05318 0.57 +1.4
807,822 + BACOVA_05318 0.61 -0.6
807,822 + BACOVA_05318 0.61 -1.4
807,823 - BACOVA_05318 0.62 +1.0
807,827 - BACOVA_05318 0.64 +1.7
807,828 + BACOVA_05318 0.65 +0.3
807,828 + BACOVA_05318 0.65 +0.3
807,829 - BACOVA_05318 0.66 -0.2
807,829 - BACOVA_05318 0.66 -0.2
807,862 - BACOVA_05318 0.84 +0.9
807,893 + +2.0
807,899 + +1.0
807,903 + BACOVA_05320 0.11 -1.4
807,903 + BACOVA_05320 0.11 -0.3
807,931 - BACOVA_05320 0.26 -2.0
807,940 + BACOVA_05320 0.30 -0.0
807,947 + BACOVA_05320 0.34 -0.7
807,947 + BACOVA_05320 0.34 +0.7
807,948 - BACOVA_05320 0.34 +0.6
807,948 - BACOVA_05320 0.34 -1.0
807,950 - BACOVA_05320 0.35 +1.6
807,950 - BACOVA_05320 0.35 +0.4
807,950 - BACOVA_05320 0.35 +0.3
807,952 - BACOVA_05320 0.36 +0.1
807,952 - BACOVA_05320 0.36 +1.0
807,958 - BACOVA_05320 0.39 +1.1
808,000 + BACOVA_05320 0.61 +2.0
808,001 - BACOVA_05320 0.62 +0.3
808,007 - BACOVA_05320 0.65 -1.5
808,055 - BACOVA_05320 0.89 -0.2
808,101 + -0.8
808,114 + -1.6
808,115 - +0.3
808,220 + BACOVA_05321 0.27 +0.1
808,268 + BACOVA_05321 0.39 +0.6
808,269 - BACOVA_05321 0.39 +0.1
808,292 - BACOVA_05321 0.45 +0.6
808,292 - BACOVA_05321 0.45 +1.0
808,313 + BACOVA_05321 0.50 -1.6
808,405 - BACOVA_05321 0.73 -1.1
808,416 + BACOVA_05321 0.76 -0.2
808,434 - BACOVA_05321 0.80 +0.7
808,449 + BACOVA_05321 0.84 +1.2
808,493 + -0.0
808,517 + +1.5
808,518 - +1.1
808,518 - -0.5
808,519 + +0.2
808,522 - -2.0
808,538 + +1.3
808,538 + +1.0
808,557 + -0.0
808,558 - +0.2
808,579 + +1.4
808,610 + BACOVA_05322 0.15 -1.0
808,610 + BACOVA_05322 0.15 -0.6
808,611 - BACOVA_05322 0.16 -1.9
808,637 + BACOVA_05322 0.22 -1.8
808,638 - BACOVA_05322 0.22 -1.8
808,660 + BACOVA_05322 0.28 -1.6
808,661 - BACOVA_05322 0.28 -0.7
808,661 - BACOVA_05322 0.28 +0.4
808,661 - BACOVA_05322 0.28 -0.9
808,661 - BACOVA_05322 0.28 +0.4
808,661 - BACOVA_05322 0.28 +0.3
808,664 - BACOVA_05322 0.29 -0.4
808,678 + BACOVA_05322 0.32 +0.1
808,691 - BACOVA_05322 0.35 -1.5
808,705 + BACOVA_05322 0.39 +0.6
808,705 + BACOVA_05322 0.39 -0.9
808,706 - BACOVA_05322 0.39 +0.6
808,706 - BACOVA_05322 0.39 +1.5
808,800 - BACOVA_05322 0.62 -2.3
808,800 - BACOVA_05322 0.62 +0.2
808,841 + BACOVA_05322 0.72 +0.6
808,881 - BACOVA_05322 0.82 -1.0
808,884 + BACOVA_05322 0.83 -0.5
808,885 - BACOVA_05322 0.83 +0.8
808,902 - BACOVA_05322 0.87 -0.3
808,957 + +0.2
808,976 - +0.5
808,976 - +1.3
809,006 + -0.0
809,047 + -0.3
809,056 + +0.4
809,073 + +0.3
809,074 - +0.4

Or see this region's nucleotide sequence