Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03854

Experiment: Glucomannan (konjac) 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03852 and BACOVA_03853 are separated by 6 nucleotidesBACOVA_03853 and BACOVA_03854 are separated by 19 nucleotidesBACOVA_03854 and BACOVA_03855 are separated by 242 nucleotidesBACOVA_03855 and BACOVA_03856 are separated by 56 nucleotides BACOVA_03852: BACOVA_03852 - carbohydrate kinase, FGGY family protein, at 202,539 to 203,969 _03852 BACOVA_03853: BACOVA_03853 - hypothetical protein, at 203,976 to 204,368 _03853 BACOVA_03854: BACOVA_03854 - L-fucose:H+ symporter permease, at 204,388 to 205,698 _03854 BACOVA_03855: BACOVA_03855 - RNA polymerase sigma-70 factor, at 205,941 to 206,492 _03855 BACOVA_03856: BACOVA_03856 - sigma factor regulatory protein, FecR/PupR family, at 206,549 to 207,535 _03856 Position (kb) 204 205 206Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 203.447 kb on - strand, within BACOVA_03852at 203.516 kb on + strand, within BACOVA_03852at 203.516 kb on + strand, within BACOVA_03852at 203.517 kb on - strand, within BACOVA_03852at 203.518 kb on + strand, within BACOVA_03852at 203.553 kb on - strand, within BACOVA_03852at 203.566 kb on + strand, within BACOVA_03852at 203.690 kb on - strand, within BACOVA_03852at 203.756 kb on - strand, within BACOVA_03852at 203.950 kb on + strandat 203.950 kb on + strandat 203.952 kb on + strandat 203.955 kb on + strandat 204.012 kb on + strandat 204.053 kb on - strand, within BACOVA_03853at 204.096 kb on - strand, within BACOVA_03853at 204.188 kb on + strand, within BACOVA_03853at 204.189 kb on - strand, within BACOVA_03853at 204.189 kb on - strand, within BACOVA_03853at 204.276 kb on + strand, within BACOVA_03853at 204.276 kb on + strand, within BACOVA_03853at 204.285 kb on - strand, within BACOVA_03853at 204.358 kb on - strandat 204.359 kb on + strandat 204.439 kb on - strandat 204.439 kb on - strandat 204.440 kb on + strandat 204.441 kb on - strandat 204.448 kb on - strandat 204.456 kb on + strandat 204.456 kb on + strandat 204.457 kb on - strandat 204.510 kb on - strandat 204.574 kb on + strand, within BACOVA_03854at 204.664 kb on + strand, within BACOVA_03854at 204.664 kb on + strand, within BACOVA_03854at 204.665 kb on - strand, within BACOVA_03854at 204.665 kb on - strand, within BACOVA_03854at 204.713 kb on - strand, within BACOVA_03854at 204.713 kb on - strand, within BACOVA_03854at 204.733 kb on + strand, within BACOVA_03854at 204.785 kb on - strand, within BACOVA_03854at 204.787 kb on - strand, within BACOVA_03854at 204.787 kb on - strand, within BACOVA_03854at 204.874 kb on + strand, within BACOVA_03854at 204.874 kb on + strand, within BACOVA_03854at 204.874 kb on + strand, within BACOVA_03854at 204.875 kb on - strand, within BACOVA_03854at 204.875 kb on - strand, within BACOVA_03854at 204.878 kb on + strand, within BACOVA_03854at 204.879 kb on - strand, within BACOVA_03854at 204.879 kb on - strand, within BACOVA_03854at 204.998 kb on - strand, within BACOVA_03854at 204.998 kb on - strand, within BACOVA_03854at 204.998 kb on - strand, within BACOVA_03854at 205.022 kb on + strand, within BACOVA_03854at 205.080 kb on + strand, within BACOVA_03854at 205.080 kb on + strand, within BACOVA_03854at 205.081 kb on - strand, within BACOVA_03854at 205.086 kb on - strand, within BACOVA_03854at 205.142 kb on + strand, within BACOVA_03854at 205.160 kb on - strand, within BACOVA_03854at 205.163 kb on + strand, within BACOVA_03854at 205.163 kb on + strand, within BACOVA_03854at 205.176 kb on + strand, within BACOVA_03854at 205.177 kb on - strand, within BACOVA_03854at 205.231 kb on - strand, within BACOVA_03854at 205.257 kb on - strand, within BACOVA_03854at 205.257 kb on - strand, within BACOVA_03854at 205.269 kb on + strand, within BACOVA_03854at 205.269 kb on + strand, within BACOVA_03854at 205.270 kb on - strand, within BACOVA_03854at 205.270 kb on - strand, within BACOVA_03854at 205.270 kb on - strand, within BACOVA_03854at 205.272 kb on + strand, within BACOVA_03854at 205.273 kb on - strand, within BACOVA_03854at 205.277 kb on + strand, within BACOVA_03854at 205.296 kb on + strand, within BACOVA_03854at 205.297 kb on - strand, within BACOVA_03854at 205.315 kb on - strand, within BACOVA_03854at 205.331 kb on - strand, within BACOVA_03854at 205.331 kb on - strand, within BACOVA_03854at 205.365 kb on + strand, within BACOVA_03854at 205.365 kb on + strand, within BACOVA_03854at 205.389 kb on - strand, within BACOVA_03854at 205.433 kb on + strand, within BACOVA_03854at 205.449 kb on + strand, within BACOVA_03854at 205.449 kb on + strand, within BACOVA_03854at 205.450 kb on - strand, within BACOVA_03854at 205.479 kb on + strand, within BACOVA_03854at 205.530 kb on + strand, within BACOVA_03854at 205.530 kb on + strand, within BACOVA_03854at 205.531 kb on - strand, within BACOVA_03854at 205.534 kb on - strand, within BACOVA_03854at 205.534 kb on - strand, within BACOVA_03854at 205.569 kb on - strandat 205.598 kb on + strandat 205.701 kb on + strandat 205.701 kb on + strandat 205.702 kb on - strandat 205.710 kb on - strandat 205.735 kb on + strandat 205.736 kb on - strandat 205.736 kb on - strandat 205.811 kb on + strandat 205.811 kb on + strandat 205.812 kb on - strandat 205.884 kb on + strandat 205.885 kb on - strandat 205.887 kb on + strandat 205.940 kb on + strandat 205.941 kb on - strandat 205.941 kb on - strandat 205.969 kb on + strandat 205.969 kb on + strandat 205.988 kb on + strandat 206.064 kb on - strand, within BACOVA_03855at 206.064 kb on - strand, within BACOVA_03855at 206.136 kb on + strand, within BACOVA_03855at 206.137 kb on - strand, within BACOVA_03855at 206.137 kb on - strand, within BACOVA_03855at 206.137 kb on - strand, within BACOVA_03855at 206.138 kb on + strand, within BACOVA_03855at 206.139 kb on - strand, within BACOVA_03855at 206.142 kb on + strand, within BACOVA_03855at 206.142 kb on + strand, within BACOVA_03855at 206.143 kb on - strand, within BACOVA_03855at 206.143 kb on - strand, within BACOVA_03855at 206.259 kb on - strand, within BACOVA_03855at 206.270 kb on + strand, within BACOVA_03855at 206.271 kb on - strand, within BACOVA_03855at 206.275 kb on - strand, within BACOVA_03855at 206.275 kb on - strand, within BACOVA_03855at 206.275 kb on - strand, within BACOVA_03855at 206.275 kb on - strand, within BACOVA_03855at 206.280 kb on - strand, within BACOVA_03855at 206.290 kb on + strand, within BACOVA_03855at 206.291 kb on - strand, within BACOVA_03855at 206.291 kb on - strand, within BACOVA_03855at 206.366 kb on + strand, within BACOVA_03855at 206.367 kb on - strand, within BACOVA_03855at 206.372 kb on + strand, within BACOVA_03855at 206.375 kb on + strand, within BACOVA_03855at 206.384 kb on - strand, within BACOVA_03855at 206.430 kb on + strand, within BACOVA_03855at 206.450 kb on - strandat 206.517 kb on + strandat 206.518 kb on - strandat 206.518 kb on - strandat 206.518 kb on - strandat 206.577 kb on + strandat 206.593 kb on + strandat 206.594 kb on - strandat 206.594 kb on - strandat 206.594 kb on - strandat 206.594 kb on - strandat 206.637 kb on + strandat 206.638 kb on - strandat 206.638 kb on - strandat 206.638 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucomannan (konjac) 2.5 mg/ml (C)
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203,447 - BACOVA_03852 0.63 +1.4
203,516 + BACOVA_03852 0.68 +0.8
203,516 + BACOVA_03852 0.68 -0.7
203,517 - BACOVA_03852 0.68 -0.5
203,518 + BACOVA_03852 0.68 +1.7
203,553 - BACOVA_03852 0.71 +0.4
203,566 + BACOVA_03852 0.72 +0.5
203,690 - BACOVA_03852 0.80 +0.7
203,756 - BACOVA_03852 0.85 -1.9
203,950 + -0.5
203,950 + +0.5
203,952 + -0.5
203,955 + +0.7
204,012 + +0.4
204,053 - BACOVA_03853 0.20 -0.4
204,096 - BACOVA_03853 0.31 +1.8
204,188 + BACOVA_03853 0.54 -2.3
204,189 - BACOVA_03853 0.54 -0.5
204,189 - BACOVA_03853 0.54 -1.9
204,276 + BACOVA_03853 0.76 +0.4
204,276 + BACOVA_03853 0.76 -0.7
204,285 - BACOVA_03853 0.79 +0.1
204,358 - -0.0
204,359 + -0.3
204,439 - +1.5
204,439 - -0.4
204,440 + -0.3
204,441 - -1.0
204,448 - -0.4
204,456 + +0.2
204,456 + +0.0
204,457 - -0.4
204,510 - -0.3
204,574 + BACOVA_03854 0.14 -0.3
204,664 + BACOVA_03854 0.21 -1.0
204,664 + BACOVA_03854 0.21 -0.2
204,665 - BACOVA_03854 0.21 +0.4
204,665 - BACOVA_03854 0.21 -0.7
204,713 - BACOVA_03854 0.25 -1.1
204,713 - BACOVA_03854 0.25 -1.2
204,733 + BACOVA_03854 0.26 +0.4
204,785 - BACOVA_03854 0.30 +1.0
204,787 - BACOVA_03854 0.30 +0.6
204,787 - BACOVA_03854 0.30 -0.8
204,874 + BACOVA_03854 0.37 -1.1
204,874 + BACOVA_03854 0.37 +0.7
204,874 + BACOVA_03854 0.37 +0.5
204,875 - BACOVA_03854 0.37 -0.7
204,875 - BACOVA_03854 0.37 -1.6
204,878 + BACOVA_03854 0.37 +0.8
204,879 - BACOVA_03854 0.37 +1.3
204,879 - BACOVA_03854 0.37 -0.1
204,998 - BACOVA_03854 0.47 -0.6
204,998 - BACOVA_03854 0.47 +0.0
204,998 - BACOVA_03854 0.47 -0.2
205,022 + BACOVA_03854 0.48 -0.2
205,080 + BACOVA_03854 0.53 -0.9
205,080 + BACOVA_03854 0.53 +0.6
205,081 - BACOVA_03854 0.53 -0.8
205,086 - BACOVA_03854 0.53 +0.1
205,142 + BACOVA_03854 0.58 +2.2
205,160 - BACOVA_03854 0.59 +1.2
205,163 + BACOVA_03854 0.59 +0.8
205,163 + BACOVA_03854 0.59 +0.4
205,176 + BACOVA_03854 0.60 +1.7
205,177 - BACOVA_03854 0.60 +0.6
205,231 - BACOVA_03854 0.64 -1.0
205,257 - BACOVA_03854 0.66 +0.1
205,257 - BACOVA_03854 0.66 -2.2
205,269 + BACOVA_03854 0.67 +0.3
205,269 + BACOVA_03854 0.67 -1.0
205,270 - BACOVA_03854 0.67 +0.5
205,270 - BACOVA_03854 0.67 +2.2
205,270 - BACOVA_03854 0.67 -0.2
205,272 + BACOVA_03854 0.67 +0.5
205,273 - BACOVA_03854 0.68 +0.4
205,277 + BACOVA_03854 0.68 -0.3
205,296 + BACOVA_03854 0.69 +1.3
205,297 - BACOVA_03854 0.69 +0.4
205,315 - BACOVA_03854 0.71 +2.7
205,331 - BACOVA_03854 0.72 -0.6
205,331 - BACOVA_03854 0.72 +0.1
205,365 + BACOVA_03854 0.75 +0.8
205,365 + BACOVA_03854 0.75 -0.5
205,389 - BACOVA_03854 0.76 +0.7
205,433 + BACOVA_03854 0.80 -0.5
205,449 + BACOVA_03854 0.81 -0.7
205,449 + BACOVA_03854 0.81 +0.7
205,450 - BACOVA_03854 0.81 -0.5
205,479 + BACOVA_03854 0.83 +0.5
205,530 + BACOVA_03854 0.87 -1.5
205,530 + BACOVA_03854 0.87 -0.0
205,531 - BACOVA_03854 0.87 -0.3
205,534 - BACOVA_03854 0.87 +0.3
205,534 - BACOVA_03854 0.87 +0.3
205,569 - -0.2
205,598 + -0.3
205,701 + +1.2
205,701 + -1.2
205,702 - -2.2
205,710 - +1.0
205,735 + -0.3
205,736 - +1.0
205,736 - -0.2
205,811 + +1.4
205,811 + +0.9
205,812 - -0.2
205,884 + +0.3
205,885 - +0.4
205,887 + -1.8
205,940 + -1.2
205,941 - -0.2
205,941 - -0.5
205,969 + +1.5
205,969 + -0.4
205,988 + +0.3
206,064 - BACOVA_03855 0.22 -0.2
206,064 - BACOVA_03855 0.22 +0.8
206,136 + BACOVA_03855 0.35 -0.3
206,137 - BACOVA_03855 0.36 +0.3
206,137 - BACOVA_03855 0.36 -1.2
206,137 - BACOVA_03855 0.36 +0.7
206,138 + BACOVA_03855 0.36 +2.1
206,139 - BACOVA_03855 0.36 -0.7
206,142 + BACOVA_03855 0.36 +0.5
206,142 + BACOVA_03855 0.36 -0.1
206,143 - BACOVA_03855 0.37 -0.6
206,143 - BACOVA_03855 0.37 -0.0
206,259 - BACOVA_03855 0.58 -0.7
206,270 + BACOVA_03855 0.60 +1.0
206,271 - BACOVA_03855 0.60 +0.5
206,275 - BACOVA_03855 0.61 +1.3
206,275 - BACOVA_03855 0.61 +1.6
206,275 - BACOVA_03855 0.61 +0.3
206,275 - BACOVA_03855 0.61 -0.2
206,280 - BACOVA_03855 0.61 -0.2
206,290 + BACOVA_03855 0.63 +0.5
206,291 - BACOVA_03855 0.63 -1.2
206,291 - BACOVA_03855 0.63 -0.8
206,366 + BACOVA_03855 0.77 -0.1
206,367 - BACOVA_03855 0.77 +0.8
206,372 + BACOVA_03855 0.78 +1.0
206,375 + BACOVA_03855 0.79 +3.2
206,384 - BACOVA_03855 0.80 +1.0
206,430 + BACOVA_03855 0.89 +0.5
206,450 - -0.5
206,517 + -0.8
206,518 - -3.4
206,518 - +0.5
206,518 - -0.7
206,577 + +0.4
206,593 + +0.2
206,594 - -0.4
206,594 - -1.2
206,594 - +0.3
206,594 - -0.7
206,637 + -0.0
206,638 - +1.3
206,638 - +0.8
206,638 - +0.3

Or see this region's nucleotide sequence