Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03633

Experiment: Glucomannan (konjac) 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03632 and BACOVA_03633 are separated by 14 nucleotidesBACOVA_03633 and BACOVA_03634 are separated by 36 nucleotides BACOVA_03632: BACOVA_03632 - hypothetical protein, at 445,107 to 446,354 _03632 BACOVA_03633: BACOVA_03633 - glycosyl hydrolase family 76, at 446,369 to 447,760 _03633 BACOVA_03634: BACOVA_03634 - TonB-linked outer membrane protein, SusC/RagA family, at 447,797 to 451,042 _03634 Position (kb) 446 447 448Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 445.369 kb on + strand, within BACOVA_03632at 445.397 kb on + strand, within BACOVA_03632at 445.481 kb on - strand, within BACOVA_03632at 445.484 kb on + strand, within BACOVA_03632at 445.543 kb on - strand, within BACOVA_03632at 445.565 kb on + strand, within BACOVA_03632at 445.565 kb on + strand, within BACOVA_03632at 445.565 kb on + strand, within BACOVA_03632at 445.566 kb on - strand, within BACOVA_03632at 445.596 kb on - strand, within BACOVA_03632at 445.759 kb on + strand, within BACOVA_03632at 445.760 kb on - strand, within BACOVA_03632at 445.763 kb on + strand, within BACOVA_03632at 445.763 kb on + strand, within BACOVA_03632at 445.764 kb on - strand, within BACOVA_03632at 445.764 kb on - strand, within BACOVA_03632at 445.764 kb on - strand, within BACOVA_03632at 445.769 kb on + strand, within BACOVA_03632at 445.774 kb on + strand, within BACOVA_03632at 445.775 kb on - strand, within BACOVA_03632at 445.775 kb on - strand, within BACOVA_03632at 445.797 kb on + strand, within BACOVA_03632at 445.798 kb on - strand, within BACOVA_03632at 445.798 kb on - strand, within BACOVA_03632at 445.829 kb on + strand, within BACOVA_03632at 445.847 kb on + strand, within BACOVA_03632at 445.847 kb on + strand, within BACOVA_03632at 445.848 kb on - strand, within BACOVA_03632at 445.848 kb on - strand, within BACOVA_03632at 445.934 kb on - strand, within BACOVA_03632at 445.942 kb on - strand, within BACOVA_03632at 446.010 kb on + strand, within BACOVA_03632at 446.011 kb on - strand, within BACOVA_03632at 446.011 kb on - strand, within BACOVA_03632at 446.011 kb on - strand, within BACOVA_03632at 446.069 kb on + strand, within BACOVA_03632at 446.109 kb on - strand, within BACOVA_03632at 446.109 kb on - strand, within BACOVA_03632at 446.154 kb on + strand, within BACOVA_03632at 446.154 kb on + strand, within BACOVA_03632at 446.155 kb on - strand, within BACOVA_03632at 446.158 kb on - strand, within BACOVA_03632at 446.158 kb on - strand, within BACOVA_03632at 446.165 kb on - strand, within BACOVA_03632at 446.199 kb on + strand, within BACOVA_03632at 446.200 kb on - strand, within BACOVA_03632at 446.200 kb on - strand, within BACOVA_03632at 446.256 kb on + strandat 446.259 kb on + strandat 446.260 kb on - strandat 446.314 kb on - strandat 446.314 kb on - strandat 446.363 kb on - strandat 446.365 kb on + strandat 446.366 kb on - strandat 446.379 kb on - strandat 446.379 kb on - strandat 446.379 kb on - strandat 446.380 kb on + strandat 446.382 kb on + strandat 446.382 kb on + strandat 446.386 kb on - strandat 446.386 kb on - strandat 446.386 kb on - strandat 446.386 kb on - strandat 446.468 kb on + strandat 446.468 kb on + strandat 446.477 kb on - strandat 446.492 kb on + strandat 446.492 kb on + strandat 446.493 kb on - strandat 446.544 kb on - strand, within BACOVA_03633at 446.702 kb on + strand, within BACOVA_03633at 446.705 kb on - strand, within BACOVA_03633at 446.705 kb on - strand, within BACOVA_03633at 446.827 kb on + strand, within BACOVA_03633at 446.835 kb on - strand, within BACOVA_03633at 446.835 kb on - strand, within BACOVA_03633at 446.835 kb on - strand, within BACOVA_03633at 446.876 kb on + strand, within BACOVA_03633at 446.900 kb on + strand, within BACOVA_03633at 446.903 kb on + strand, within BACOVA_03633at 446.904 kb on - strand, within BACOVA_03633at 446.956 kb on + strand, within BACOVA_03633at 447.004 kb on + strand, within BACOVA_03633at 447.005 kb on - strand, within BACOVA_03633at 447.051 kb on - strand, within BACOVA_03633at 447.058 kb on + strand, within BACOVA_03633at 447.128 kb on + strand, within BACOVA_03633at 447.128 kb on + strand, within BACOVA_03633at 447.129 kb on - strand, within BACOVA_03633at 447.147 kb on - strand, within BACOVA_03633at 447.158 kb on - strand, within BACOVA_03633at 447.176 kb on + strand, within BACOVA_03633at 447.176 kb on + strand, within BACOVA_03633at 447.177 kb on - strand, within BACOVA_03633at 447.181 kb on + strand, within BACOVA_03633at 447.181 kb on + strand, within BACOVA_03633at 447.228 kb on + strand, within BACOVA_03633at 447.228 kb on + strand, within BACOVA_03633at 447.256 kb on + strand, within BACOVA_03633at 447.257 kb on - strand, within BACOVA_03633at 447.278 kb on + strand, within BACOVA_03633at 447.279 kb on - strand, within BACOVA_03633at 447.279 kb on - strand, within BACOVA_03633at 447.279 kb on - strand, within BACOVA_03633at 447.279 kb on - strand, within BACOVA_03633at 447.286 kb on + strand, within BACOVA_03633at 447.302 kb on + strand, within BACOVA_03633at 447.303 kb on - strand, within BACOVA_03633at 447.311 kb on - strand, within BACOVA_03633at 447.429 kb on - strand, within BACOVA_03633at 447.487 kb on + strand, within BACOVA_03633at 447.488 kb on - strand, within BACOVA_03633at 447.551 kb on + strand, within BACOVA_03633at 447.554 kb on + strand, within BACOVA_03633at 447.554 kb on + strand, within BACOVA_03633at 447.554 kb on + strand, within BACOVA_03633at 447.555 kb on - strand, within BACOVA_03633at 447.567 kb on - strand, within BACOVA_03633at 447.758 kb on + strandat 447.770 kb on - strandat 447.801 kb on + strandat 447.801 kb on + strandat 447.802 kb on - strandat 447.802 kb on - strandat 447.805 kb on + strandat 447.806 kb on - strandat 447.808 kb on - strandat 447.818 kb on - strandat 447.859 kb on - strandat 447.916 kb on + strandat 447.919 kb on + strandat 447.924 kb on + strandat 447.925 kb on - strandat 447.925 kb on - strandat 448.033 kb on + strandat 448.034 kb on - strandat 448.140 kb on + strand, within BACOVA_03634at 448.140 kb on + strand, within BACOVA_03634at 448.141 kb on - strand, within BACOVA_03634at 448.143 kb on + strand, within BACOVA_03634at 448.154 kb on - strand, within BACOVA_03634at 448.183 kb on - strand, within BACOVA_03634at 448.189 kb on + strand, within BACOVA_03634at 448.189 kb on + strand, within BACOVA_03634at 448.229 kb on - strand, within BACOVA_03634at 448.229 kb on - strand, within BACOVA_03634at 448.379 kb on + strand, within BACOVA_03634at 448.380 kb on - strand, within BACOVA_03634at 448.380 kb on - strand, within BACOVA_03634at 448.497 kb on - strand, within BACOVA_03634at 448.522 kb on - strand, within BACOVA_03634at 448.528 kb on + strand, within BACOVA_03634at 448.529 kb on - strand, within BACOVA_03634at 448.532 kb on - strand, within BACOVA_03634at 448.535 kb on - strand, within BACOVA_03634at 448.585 kb on + strand, within BACOVA_03634at 448.592 kb on - strand, within BACOVA_03634at 448.623 kb on + strand, within BACOVA_03634at 448.652 kb on - strand, within BACOVA_03634at 448.652 kb on - strand, within BACOVA_03634

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucomannan (konjac) 2.5 mg/ml (C)
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445,369 + BACOVA_03632 0.21 -0.5
445,397 + BACOVA_03632 0.23 -0.7
445,481 - BACOVA_03632 0.30 -3.3
445,484 + BACOVA_03632 0.30 +0.1
445,543 - BACOVA_03632 0.35 +0.2
445,565 + BACOVA_03632 0.37 -0.1
445,565 + BACOVA_03632 0.37 -2.9
445,565 + BACOVA_03632 0.37 -2.5
445,566 - BACOVA_03632 0.37 +0.2
445,596 - BACOVA_03632 0.39 -0.7
445,759 + BACOVA_03632 0.52 +1.4
445,760 - BACOVA_03632 0.52 -1.6
445,763 + BACOVA_03632 0.53 +2.1
445,763 + BACOVA_03632 0.53 -1.3
445,764 - BACOVA_03632 0.53 -0.6
445,764 - BACOVA_03632 0.53 +0.9
445,764 - BACOVA_03632 0.53 +1.1
445,769 + BACOVA_03632 0.53 -1.2
445,774 + BACOVA_03632 0.53 -1.8
445,775 - BACOVA_03632 0.54 -1.5
445,775 - BACOVA_03632 0.54 -1.7
445,797 + BACOVA_03632 0.55 -0.0
445,798 - BACOVA_03632 0.55 +0.1
445,798 - BACOVA_03632 0.55 -2.1
445,829 + BACOVA_03632 0.58 +0.5
445,847 + BACOVA_03632 0.59 -1.3
445,847 + BACOVA_03632 0.59 -0.3
445,848 - BACOVA_03632 0.59 -1.5
445,848 - BACOVA_03632 0.59 -1.5
445,934 - BACOVA_03632 0.66 -0.4
445,942 - BACOVA_03632 0.67 +0.9
446,010 + BACOVA_03632 0.72 -0.0
446,011 - BACOVA_03632 0.72 +0.3
446,011 - BACOVA_03632 0.72 -0.5
446,011 - BACOVA_03632 0.72 -0.3
446,069 + BACOVA_03632 0.77 +1.1
446,109 - BACOVA_03632 0.80 -0.9
446,109 - BACOVA_03632 0.80 -0.8
446,154 + BACOVA_03632 0.84 +2.1
446,154 + BACOVA_03632 0.84 -0.8
446,155 - BACOVA_03632 0.84 -0.1
446,158 - BACOVA_03632 0.84 +0.9
446,158 - BACOVA_03632 0.84 -0.4
446,165 - BACOVA_03632 0.85 -0.8
446,199 + BACOVA_03632 0.88 +0.7
446,200 - BACOVA_03632 0.88 +0.7
446,200 - BACOVA_03632 0.88 -1.0
446,256 + +0.8
446,259 + +2.4
446,260 - -0.5
446,314 - -0.0
446,314 - +2.1
446,363 - +0.2
446,365 + -0.9
446,366 - -1.2
446,379 - +0.1
446,379 - -0.5
446,379 - -1.3
446,380 + +0.3
446,382 + -1.3
446,382 + -0.7
446,386 - +0.6
446,386 - -0.8
446,386 - -1.4
446,386 - -2.0
446,468 + -1.3
446,468 + -0.4
446,477 - -0.5
446,492 + -0.5
446,492 + -0.4
446,493 - +0.4
446,544 - BACOVA_03633 0.13 -0.7
446,702 + BACOVA_03633 0.24 -0.0
446,705 - BACOVA_03633 0.24 +0.8
446,705 - BACOVA_03633 0.24 -2.3
446,827 + BACOVA_03633 0.33 +0.3
446,835 - BACOVA_03633 0.33 -0.2
446,835 - BACOVA_03633 0.33 +0.1
446,835 - BACOVA_03633 0.33 +0.1
446,876 + BACOVA_03633 0.36 +0.1
446,900 + BACOVA_03633 0.38 +0.5
446,903 + BACOVA_03633 0.38 -0.4
446,904 - BACOVA_03633 0.38 -2.5
446,956 + BACOVA_03633 0.42 +0.5
447,004 + BACOVA_03633 0.46 -1.5
447,005 - BACOVA_03633 0.46 -0.7
447,051 - BACOVA_03633 0.49 -1.2
447,058 + BACOVA_03633 0.49 +0.5
447,128 + BACOVA_03633 0.55 -2.6
447,128 + BACOVA_03633 0.55 +0.5
447,129 - BACOVA_03633 0.55 -0.7
447,147 - BACOVA_03633 0.56 +1.1
447,158 - BACOVA_03633 0.57 -0.5
447,176 + BACOVA_03633 0.58 -1.2
447,176 + BACOVA_03633 0.58 -0.9
447,177 - BACOVA_03633 0.58 -0.7
447,181 + BACOVA_03633 0.58 -0.3
447,181 + BACOVA_03633 0.58 -0.9
447,228 + BACOVA_03633 0.62 -0.9
447,228 + BACOVA_03633 0.62 +1.1
447,256 + BACOVA_03633 0.64 -0.8
447,257 - BACOVA_03633 0.64 -1.4
447,278 + BACOVA_03633 0.65 -0.8
447,279 - BACOVA_03633 0.65 -1.9
447,279 - BACOVA_03633 0.65 -0.4
447,279 - BACOVA_03633 0.65 -0.2
447,279 - BACOVA_03633 0.65 -2.6
447,286 + BACOVA_03633 0.66 +0.1
447,302 + BACOVA_03633 0.67 +0.1
447,303 - BACOVA_03633 0.67 +0.6
447,311 - BACOVA_03633 0.68 -0.7
447,429 - BACOVA_03633 0.76 +0.1
447,487 + BACOVA_03633 0.80 -0.2
447,488 - BACOVA_03633 0.80 +1.6
447,551 + BACOVA_03633 0.85 -4.1
447,554 + BACOVA_03633 0.85 +0.5
447,554 + BACOVA_03633 0.85 -1.3
447,554 + BACOVA_03633 0.85 -0.9
447,555 - BACOVA_03633 0.85 -1.2
447,567 - BACOVA_03633 0.86 -2.3
447,758 + +1.1
447,770 - -0.3
447,801 + -1.5
447,801 + -0.6
447,802 - -0.0
447,802 - +0.1
447,805 + -1.1
447,806 - -2.1
447,808 - -0.8
447,818 - -0.4
447,859 - -0.5
447,916 + +0.8
447,919 + -0.2
447,924 + -0.5
447,925 - +0.4
447,925 - -1.1
448,033 + +0.2
448,034 - +0.5
448,140 + BACOVA_03634 0.11 -0.3
448,140 + BACOVA_03634 0.11 +1.1
448,141 - BACOVA_03634 0.11 -0.9
448,143 + BACOVA_03634 0.11 +1.1
448,154 - BACOVA_03634 0.11 -1.7
448,183 - BACOVA_03634 0.12 -0.5
448,189 + BACOVA_03634 0.12 -1.0
448,189 + BACOVA_03634 0.12 +1.5
448,229 - BACOVA_03634 0.13 +0.1
448,229 - BACOVA_03634 0.13 -2.4
448,379 + BACOVA_03634 0.18 -2.9
448,380 - BACOVA_03634 0.18 +0.1
448,380 - BACOVA_03634 0.18 +0.7
448,497 - BACOVA_03634 0.22 -1.6
448,522 - BACOVA_03634 0.22 -0.3
448,528 + BACOVA_03634 0.23 -0.8
448,529 - BACOVA_03634 0.23 +0.1
448,532 - BACOVA_03634 0.23 +0.1
448,535 - BACOVA_03634 0.23 +0.7
448,585 + BACOVA_03634 0.24 -2.4
448,592 - BACOVA_03634 0.24 +0.6
448,623 + BACOVA_03634 0.25 -2.3
448,652 - BACOVA_03634 0.26 -0.3
448,652 - BACOVA_03634 0.26 -2.8

Or see this region's nucleotide sequence