Experiment: Glucomannan (konjac) 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03208 and BACOVA_03209 are separated by 202 nucleotides BACOVA_03209 and BACOVA_03210 are separated by 78 nucleotides BACOVA_03210 and BACOVA_03211 are separated by 79 nucleotides BACOVA_03211 and BACOVA_03212 are separated by 81 nucleotides BACOVA_03212 and BACOVA_03213 are separated by 13 nucleotides BACOVA_03213 and BACOVA_03214 are separated by 29 nucleotides
BACOVA_03208: BACOVA_03208 - hypothetical protein, at 299,442 to 299,909
_03208
BACOVA_03209: BACOVA_03209 - hypothetical protein, at 300,112 to 300,387
_03209
BACOVA_03210: BACOVA_03210 - hypothetical protein, at 300,466 to 300,570
_03210
BACOVA_03211: BACOVA_03211 - hypothetical protein, at 300,650 to 301,702
_03211
BACOVA_03212: BACOVA_03212 - hypothetical protein, at 301,784 to 302,293
_03212
BACOVA_03213: BACOVA_03213 - hypothetical protein, at 302,307 to 302,672
_03213
BACOVA_03214: BACOVA_03214 - hypothetical protein, at 302,702 to 304,012
_03214
Position (kb) 300
301
302 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 299.660 kb on + strand, within BACOVA_03208 at 299.661 kb on - strand, within BACOVA_03208 at 299.661 kb on - strand, within BACOVA_03208 at 299.661 kb on - strand, within BACOVA_03208 at 299.664 kb on + strand, within BACOVA_03208 at 299.664 kb on + strand, within BACOVA_03208 at 299.687 kb on + strand, within BACOVA_03208 at 299.688 kb on - strand, within BACOVA_03208 at 299.693 kb on + strand, within BACOVA_03208 at 299.693 kb on + strand, within BACOVA_03208 at 299.693 kb on + strand, within BACOVA_03208 at 299.693 kb on + strand, within BACOVA_03208 at 299.693 kb on + strand, within BACOVA_03208 at 299.693 kb on + strand, within BACOVA_03208 at 299.694 kb on - strand, within BACOVA_03208 at 299.694 kb on - strand, within BACOVA_03208 at 299.694 kb on - strand, within BACOVA_03208 at 299.696 kb on + strand, within BACOVA_03208 at 299.724 kb on + strand, within BACOVA_03208 at 299.725 kb on - strand, within BACOVA_03208 at 299.797 kb on + strand, within BACOVA_03208 at 299.797 kb on + strand, within BACOVA_03208 at 299.797 kb on + strand, within BACOVA_03208 at 299.799 kb on + strand, within BACOVA_03208 at 299.799 kb on + strand, within BACOVA_03208 at 299.800 kb on - strand, within BACOVA_03208 at 299.800 kb on - strand, within BACOVA_03208 at 299.802 kb on + strand, within BACOVA_03208 at 299.840 kb on - strand, within BACOVA_03208 at 299.840 kb on - strand, within BACOVA_03208 at 299.840 kb on - strand, within BACOVA_03208 at 299.843 kb on + strand, within BACOVA_03208 at 299.844 kb on - strand, within BACOVA_03208 at 299.844 kb on - strand, within BACOVA_03208 at 299.844 kb on - strand, within BACOVA_03208 at 299.851 kb on - strand, within BACOVA_03208 at 299.856 kb on - strand, within BACOVA_03208 at 299.860 kb on - strand, within BACOVA_03208 at 299.869 kb on + strand at 299.869 kb on + strand at 299.874 kb on + strand at 299.891 kb on + strand at 299.896 kb on + strand at 299.896 kb on + strand at 299.897 kb on - strand at 299.932 kb on - strand at 300.023 kb on - strand at 300.049 kb on - strand at 300.100 kb on - strand at 300.108 kb on + strand at 300.108 kb on + strand at 300.109 kb on - strand at 300.110 kb on + strand at 300.111 kb on - strand at 300.111 kb on - strand at 300.138 kb on + strand at 300.231 kb on + strand, within BACOVA_03209 at 300.232 kb on - strand, within BACOVA_03209 at 300.271 kb on - strand, within BACOVA_03209 at 300.316 kb on + strand, within BACOVA_03209 at 300.316 kb on + strand, within BACOVA_03209 at 300.318 kb on + strand, within BACOVA_03209 at 300.321 kb on - strand, within BACOVA_03209 at 300.321 kb on - strand, within BACOVA_03209 at 300.352 kb on + strand, within BACOVA_03209 at 300.354 kb on + strand, within BACOVA_03209 at 300.360 kb on - strand at 300.368 kb on - strand at 300.371 kb on + strand at 300.372 kb on - strand at 300.386 kb on - strand at 300.454 kb on + strand at 300.454 kb on + strand at 300.455 kb on - strand at 300.455 kb on - strand at 300.455 kb on - strand at 300.465 kb on - strand at 300.465 kb on - strand at 300.536 kb on + strand, within BACOVA_03210 at 300.552 kb on + strand, within BACOVA_03210 at 300.554 kb on + strand, within BACOVA_03210 at 300.554 kb on + strand, within BACOVA_03210 at 300.554 kb on + strand, within BACOVA_03210 at 300.555 kb on - strand, within BACOVA_03210 at 300.555 kb on - strand, within BACOVA_03210 at 300.577 kb on - strand at 300.588 kb on - strand at 300.634 kb on - strand at 300.634 kb on - strand at 300.670 kb on - strand at 300.697 kb on + strand at 300.706 kb on - strand at 300.753 kb on + strand at 300.818 kb on + strand, within BACOVA_03211 at 300.819 kb on - strand, within BACOVA_03211 at 300.821 kb on + strand, within BACOVA_03211 at 300.822 kb on - strand, within BACOVA_03211 at 300.990 kb on - strand, within BACOVA_03211 at 300.990 kb on - strand, within BACOVA_03211 at 300.991 kb on + strand, within BACOVA_03211 at 300.991 kb on + strand, within BACOVA_03211 at 300.992 kb on - strand, within BACOVA_03211 at 300.992 kb on - strand, within BACOVA_03211 at 300.992 kb on - strand, within BACOVA_03211 at 301.012 kb on + strand, within BACOVA_03211 at 301.012 kb on + strand, within BACOVA_03211 at 301.013 kb on - strand, within BACOVA_03211 at 301.013 kb on - strand, within BACOVA_03211 at 301.013 kb on - strand, within BACOVA_03211 at 301.057 kb on + strand, within BACOVA_03211 at 301.062 kb on - strand, within BACOVA_03211 at 301.063 kb on + strand, within BACOVA_03211 at 301.063 kb on + strand, within BACOVA_03211 at 301.064 kb on - strand, within BACOVA_03211 at 301.066 kb on + strand, within BACOVA_03211 at 301.094 kb on + strand, within BACOVA_03211 at 301.095 kb on - strand, within BACOVA_03211 at 301.097 kb on - strand, within BACOVA_03211 at 301.117 kb on - strand, within BACOVA_03211 at 301.117 kb on - strand, within BACOVA_03211 at 301.120 kb on + strand, within BACOVA_03211 at 301.120 kb on + strand, within BACOVA_03211 at 301.120 kb on + strand, within BACOVA_03211 at 301.120 kb on + strand, within BACOVA_03211 at 301.121 kb on - strand, within BACOVA_03211 at 301.121 kb on - strand, within BACOVA_03211 at 301.238 kb on + strand, within BACOVA_03211 at 301.238 kb on + strand, within BACOVA_03211 at 301.238 kb on + strand, within BACOVA_03211 at 301.239 kb on - strand, within BACOVA_03211 at 301.241 kb on + strand, within BACOVA_03211 at 301.241 kb on + strand, within BACOVA_03211 at 301.243 kb on + strand, within BACOVA_03211 at 301.244 kb on - strand, within BACOVA_03211 at 301.274 kb on + strand, within BACOVA_03211 at 301.275 kb on - strand, within BACOVA_03211 at 301.281 kb on - strand, within BACOVA_03211 at 301.285 kb on + strand, within BACOVA_03211 at 301.358 kb on + strand, within BACOVA_03211 at 301.359 kb on - strand, within BACOVA_03211 at 301.359 kb on - strand, within BACOVA_03211 at 301.359 kb on - strand, within BACOVA_03211 at 301.364 kb on + strand, within BACOVA_03211 at 301.365 kb on - strand, within BACOVA_03211 at 301.372 kb on + strand, within BACOVA_03211 at 301.372 kb on + strand, within BACOVA_03211 at 301.372 kb on + strand, within BACOVA_03211 at 301.373 kb on - strand, within BACOVA_03211 at 301.376 kb on - strand, within BACOVA_03211 at 301.415 kb on - strand, within BACOVA_03211 at 301.417 kb on + strand, within BACOVA_03211 at 301.426 kb on - strand, within BACOVA_03211 at 301.426 kb on - strand, within BACOVA_03211 at 301.449 kb on - strand, within BACOVA_03211 at 301.451 kb on + strand, within BACOVA_03211 at 301.486 kb on + strand, within BACOVA_03211 at 301.557 kb on - strand, within BACOVA_03211 at 301.557 kb on - strand, within BACOVA_03211 at 301.626 kb on - strand at 301.656 kb on + strand at 301.684 kb on + strand at 301.685 kb on - strand at 301.689 kb on - strand at 301.701 kb on - strand at 301.721 kb on + strand at 301.743 kb on + strand at 301.743 kb on + strand at 301.743 kb on + strand at 301.744 kb on - strand at 301.774 kb on - strand at 301.789 kb on + strand at 301.819 kb on - strand at 301.861 kb on + strand, within BACOVA_03212 at 301.862 kb on - strand, within BACOVA_03212 at 301.862 kb on - strand, within BACOVA_03212 at 301.873 kb on + strand, within BACOVA_03212 at 301.897 kb on + strand, within BACOVA_03212 at 301.898 kb on - strand, within BACOVA_03212 at 301.898 kb on - strand, within BACOVA_03212 at 301.903 kb on + strand, within BACOVA_03212 at 301.927 kb on + strand, within BACOVA_03212 at 302.028 kb on + strand, within BACOVA_03212 at 302.028 kb on + strand, within BACOVA_03212 at 302.037 kb on + strand, within BACOVA_03212 at 302.065 kb on + strand, within BACOVA_03212 at 302.079 kb on + strand, within BACOVA_03212 at 302.083 kb on + strand, within BACOVA_03212 at 302.084 kb on - strand, within BACOVA_03212 at 302.084 kb on - strand, within BACOVA_03212 at 302.084 kb on - strand, within BACOVA_03212 at 302.084 kb on - strand, within BACOVA_03212 at 302.153 kb on + strand, within BACOVA_03212 at 302.162 kb on - strand, within BACOVA_03212 at 302.162 kb on - strand, within BACOVA_03212 at 302.178 kb on + strand, within BACOVA_03212 at 302.181 kb on + strand, within BACOVA_03212 at 302.182 kb on - strand, within BACOVA_03212 at 302.182 kb on - strand, within BACOVA_03212 at 302.185 kb on + strand, within BACOVA_03212 at 302.185 kb on + strand, within BACOVA_03212 at 302.186 kb on - strand, within BACOVA_03212 at 302.275 kb on - strand at 302.281 kb on - strand at 302.281 kb on - strand at 302.346 kb on + strand, within BACOVA_03213 at 302.347 kb on - strand, within BACOVA_03213 at 302.347 kb on - strand, within BACOVA_03213 at 302.351 kb on + strand, within BACOVA_03213 at 302.351 kb on + strand, within BACOVA_03213 at 302.352 kb on - strand, within BACOVA_03213 at 302.357 kb on - strand, within BACOVA_03213 at 302.368 kb on - strand, within BACOVA_03213 at 302.368 kb on - strand, within BACOVA_03213 at 302.395 kb on - strand, within BACOVA_03213 at 302.411 kb on - strand, within BACOVA_03213 at 302.462 kb on + strand, within BACOVA_03213 at 302.464 kb on + strand, within BACOVA_03213 at 302.464 kb on + strand, within BACOVA_03213 at 302.563 kb on + strand, within BACOVA_03213 at 302.564 kb on - strand, within BACOVA_03213 at 302.585 kb on + strand, within BACOVA_03213 at 302.587 kb on + strand, within BACOVA_03213 at 302.588 kb on - strand, within BACOVA_03213 at 302.647 kb on + strand at 302.647 kb on + strand at 302.647 kb on + strand at 302.647 kb on + strand at 302.648 kb on - strand at 302.648 kb on - strand at 302.654 kb on + strand at 302.692 kb on - strand at 302.692 kb on - strand at 302.695 kb on + strand at 302.696 kb on - strand at 302.698 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glucomannan (konjac) 2.5 mg/ml (C) remove 299,660 + BACOVA_03208 0.47 +1.4 299,661 - BACOVA_03208 0.47 +1.9 299,661 - BACOVA_03208 0.47 -1.0 299,661 - BACOVA_03208 0.47 +0.6 299,664 + BACOVA_03208 0.47 +0.1 299,664 + BACOVA_03208 0.47 +0.4 299,687 + BACOVA_03208 0.52 +2.0 299,688 - BACOVA_03208 0.53 +0.2 299,693 + BACOVA_03208 0.54 +0.1 299,693 + BACOVA_03208 0.54 +1.3 299,693 + BACOVA_03208 0.54 -0.6 299,693 + BACOVA_03208 0.54 -0.0 299,693 + BACOVA_03208 0.54 -1.9 299,693 + BACOVA_03208 0.54 -0.3 299,694 - BACOVA_03208 0.54 +0.6 299,694 - BACOVA_03208 0.54 -0.3 299,694 - BACOVA_03208 0.54 -0.4 299,696 + BACOVA_03208 0.54 +0.6 299,724 + BACOVA_03208 0.60 +0.2 299,725 - BACOVA_03208 0.60 -0.6 299,797 + BACOVA_03208 0.76 -0.7 299,797 + BACOVA_03208 0.76 +0.2 299,797 + BACOVA_03208 0.76 -0.2 299,799 + BACOVA_03208 0.76 -1.0 299,799 + BACOVA_03208 0.76 -0.6 299,800 - BACOVA_03208 0.76 -0.8 299,800 - BACOVA_03208 0.76 +1.2 299,802 + BACOVA_03208 0.77 -0.1 299,840 - BACOVA_03208 0.85 +0.0 299,840 - BACOVA_03208 0.85 -0.8 299,840 - BACOVA_03208 0.85 -0.2 299,843 + BACOVA_03208 0.86 +0.0 299,844 - BACOVA_03208 0.86 -0.4 299,844 - BACOVA_03208 0.86 +0.8 299,844 - BACOVA_03208 0.86 -1.0 299,851 - BACOVA_03208 0.87 +1.2 299,856 - BACOVA_03208 0.88 -1.3 299,860 - BACOVA_03208 0.89 -2.3 299,869 + +1.2 299,869 + +0.4 299,874 + -1.3 299,891 + -1.3 299,896 + -0.9 299,896 + -0.0 299,897 - +0.7 299,932 - +1.0 300,023 - +0.0 300,049 - +0.8 300,100 - +0.5 300,108 + +0.5 300,108 + +0.0 300,109 - +0.7 300,110 + -1.1 300,111 - +0.0 300,111 - -0.3 300,138 + -0.6 300,231 + BACOVA_03209 0.43 +0.4 300,232 - BACOVA_03209 0.43 +1.1 300,271 - BACOVA_03209 0.58 +0.4 300,316 + BACOVA_03209 0.74 +0.7 300,316 + BACOVA_03209 0.74 +1.0 300,318 + BACOVA_03209 0.75 -0.1 300,321 - BACOVA_03209 0.76 +0.3 300,321 - BACOVA_03209 0.76 +0.4 300,352 + BACOVA_03209 0.87 -0.7 300,354 + BACOVA_03209 0.88 +1.4 300,360 - +0.6 300,368 - +0.3 300,371 + -0.3 300,372 - -1.2 300,386 - -1.3 300,454 + +1.0 300,454 + -0.4 300,455 - +3.3 300,455 - -1.1 300,455 - -0.8 300,465 - +0.2 300,465 - +0.0 300,536 + BACOVA_03210 0.67 -0.6 300,552 + BACOVA_03210 0.82 -0.6 300,554 + BACOVA_03210 0.84 +2.0 300,554 + BACOVA_03210 0.84 -1.1 300,554 + BACOVA_03210 0.84 -1.1 300,555 - BACOVA_03210 0.85 -0.6 300,555 - BACOVA_03210 0.85 -0.0 300,577 - -0.4 300,588 - -0.0 300,634 - +0.0 300,634 - -0.9 300,670 - -0.1 300,697 + -2.9 300,706 - +0.6 300,753 + +0.6 300,818 + BACOVA_03211 0.16 +0.3 300,819 - BACOVA_03211 0.16 -0.5 300,821 + BACOVA_03211 0.16 +0.9 300,822 - BACOVA_03211 0.16 -0.4 300,990 - BACOVA_03211 0.32 -0.6 300,990 - BACOVA_03211 0.32 -0.2 300,991 + BACOVA_03211 0.32 -1.4 300,991 + BACOVA_03211 0.32 -0.6 300,992 - BACOVA_03211 0.32 -0.9 300,992 - BACOVA_03211 0.32 +0.3 300,992 - BACOVA_03211 0.32 -0.1 301,012 + BACOVA_03211 0.34 -0.8 301,012 + BACOVA_03211 0.34 +1.0 301,013 - BACOVA_03211 0.34 +0.4 301,013 - BACOVA_03211 0.34 -0.6 301,013 - BACOVA_03211 0.34 +1.2 301,057 + BACOVA_03211 0.39 +1.0 301,062 - BACOVA_03211 0.39 +0.7 301,063 + BACOVA_03211 0.39 +0.8 301,063 + BACOVA_03211 0.39 -0.7 301,064 - BACOVA_03211 0.39 +0.6 301,066 + BACOVA_03211 0.40 +0.5 301,094 + BACOVA_03211 0.42 +1.8 301,095 - BACOVA_03211 0.42 -0.4 301,097 - BACOVA_03211 0.42 +0.0 301,117 - BACOVA_03211 0.44 -1.3 301,117 - BACOVA_03211 0.44 -0.2 301,120 + BACOVA_03211 0.45 +0.3 301,120 + BACOVA_03211 0.45 -0.6 301,120 + BACOVA_03211 0.45 +0.1 301,120 + BACOVA_03211 0.45 +0.3 301,121 - BACOVA_03211 0.45 -0.9 301,121 - BACOVA_03211 0.45 +0.6 301,238 + BACOVA_03211 0.56 +0.3 301,238 + BACOVA_03211 0.56 -0.7 301,238 + BACOVA_03211 0.56 -0.3 301,239 - BACOVA_03211 0.56 -0.6 301,241 + BACOVA_03211 0.56 -0.4 301,241 + BACOVA_03211 0.56 +0.0 301,243 + BACOVA_03211 0.56 +0.1 301,244 - BACOVA_03211 0.56 -0.1 301,274 + BACOVA_03211 0.59 -1.3 301,275 - BACOVA_03211 0.59 +0.0 301,281 - BACOVA_03211 0.60 -1.3 301,285 + BACOVA_03211 0.60 +0.4 301,358 + BACOVA_03211 0.67 -0.9 301,359 - BACOVA_03211 0.67 +0.0 301,359 - BACOVA_03211 0.67 +0.6 301,359 - BACOVA_03211 0.67 -1.4 301,364 + BACOVA_03211 0.68 +1.0 301,365 - BACOVA_03211 0.68 -0.1 301,372 + BACOVA_03211 0.69 -1.6 301,372 + BACOVA_03211 0.69 +0.6 301,372 + BACOVA_03211 0.69 +0.7 301,373 - BACOVA_03211 0.69 +2.8 301,376 - BACOVA_03211 0.69 -1.8 301,415 - BACOVA_03211 0.73 -0.4 301,417 + BACOVA_03211 0.73 +0.7 301,426 - BACOVA_03211 0.74 -2.0 301,426 - BACOVA_03211 0.74 -1.3 301,449 - BACOVA_03211 0.76 +0.4 301,451 + BACOVA_03211 0.76 -1.4 301,486 + BACOVA_03211 0.79 +1.0 301,557 - BACOVA_03211 0.86 -0.4 301,557 - BACOVA_03211 0.86 +0.1 301,626 - +1.5 301,656 + +0.0 301,684 + +0.6 301,685 - -0.4 301,689 - +0.3 301,701 - +1.2 301,721 + +0.9 301,743 + -0.2 301,743 + +0.4 301,743 + -0.7 301,744 - +0.4 301,774 - +1.5 301,789 + -0.3 301,819 - -0.2 301,861 + BACOVA_03212 0.15 +0.9 301,862 - BACOVA_03212 0.15 -0.2 301,862 - BACOVA_03212 0.15 -0.2 301,873 + BACOVA_03212 0.17 -1.0 301,897 + BACOVA_03212 0.22 +1.0 301,898 - BACOVA_03212 0.22 -0.6 301,898 - BACOVA_03212 0.22 +0.0 301,903 + BACOVA_03212 0.23 -0.1 301,927 + BACOVA_03212 0.28 +0.8 302,028 + BACOVA_03212 0.48 -0.3 302,028 + BACOVA_03212 0.48 +0.3 302,037 + BACOVA_03212 0.50 -0.4 302,065 + BACOVA_03212 0.55 +0.6 302,079 + BACOVA_03212 0.58 +1.3 302,083 + BACOVA_03212 0.59 +0.4 302,084 - BACOVA_03212 0.59 -0.4 302,084 - BACOVA_03212 0.59 -1.0 302,084 - BACOVA_03212 0.59 +0.0 302,084 - BACOVA_03212 0.59 -0.2 302,153 + BACOVA_03212 0.72 +1.8 302,162 - BACOVA_03212 0.74 -0.2 302,162 - BACOVA_03212 0.74 +0.7 302,178 + BACOVA_03212 0.77 +1.3 302,181 + BACOVA_03212 0.78 +0.5 302,182 - BACOVA_03212 0.78 +0.3 302,182 - BACOVA_03212 0.78 -1.0 302,185 + BACOVA_03212 0.79 -0.2 302,185 + BACOVA_03212 0.79 +0.2 302,186 - BACOVA_03212 0.79 -1.2 302,275 - -1.6 302,281 - +0.6 302,281 - -1.1 302,346 + BACOVA_03213 0.11 +0.2 302,347 - BACOVA_03213 0.11 -0.4 302,347 - BACOVA_03213 0.11 +0.3 302,351 + BACOVA_03213 0.12 -0.1 302,351 + BACOVA_03213 0.12 +0.7 302,352 - BACOVA_03213 0.12 +0.3 302,357 - BACOVA_03213 0.14 -1.6 302,368 - BACOVA_03213 0.17 -0.8 302,368 - BACOVA_03213 0.17 -1.9 302,395 - BACOVA_03213 0.24 -0.2 302,411 - BACOVA_03213 0.28 +2.4 302,462 + BACOVA_03213 0.42 +0.4 302,464 + BACOVA_03213 0.43 +0.4 302,464 + BACOVA_03213 0.43 +0.2 302,563 + BACOVA_03213 0.70 -0.7 302,564 - BACOVA_03213 0.70 -0.8 302,585 + BACOVA_03213 0.76 -0.4 302,587 + BACOVA_03213 0.77 +0.9 302,588 - BACOVA_03213 0.77 -1.6 302,647 + +0.0 302,647 + -1.0 302,647 + +1.8 302,647 + -0.6 302,648 - +0.5 302,648 - +0.1 302,654 + +0.7 302,692 - +1.0 302,692 - +0.5 302,695 + +0.9 302,696 - -0.1 302,698 + -1.0
Or see this region's nucleotide sequence