Experiment: Glucomannan (konjac) 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02599 and BACOVA_02600 are separated by 19 nucleotides BACOVA_02600 and BACOVA_02601 are separated by 231 nucleotides BACOVA_02601 and BACOVA_02602 are separated by 31 nucleotides BACOVA_02602 and BACOVA_02603 are separated by 278 nucleotides
BACOVA_02599: BACOVA_02599 - hypothetical protein, at 368,529 to 368,825
_02599
BACOVA_02600: BACOVA_02600 - hypothetical protein, at 368,845 to 369,258
_02600
BACOVA_02601: BACOVA_02601 - sigma-70, region 4, at 369,490 to 369,666
_02601
BACOVA_02602: BACOVA_02602 - Sigma-70 region 2, at 369,698 to 369,994
_02602
BACOVA_02603: BACOVA_02603 - dinuclear metal center protein, YbgI family, at 370,273 to 371,367
_02603
Position (kb) 369
370 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 368.700 kb on + strand, within BACOVA_02599 at 368.723 kb on + strand, within BACOVA_02599 at 368.724 kb on - strand, within BACOVA_02599 at 368.755 kb on + strand, within BACOVA_02599 at 368.756 kb on - strand, within BACOVA_02599 at 368.785 kb on + strand, within BACOVA_02599 at 368.798 kb on + strand at 368.835 kb on - strand at 368.843 kb on + strand at 368.844 kb on - strand at 368.846 kb on + strand at 368.962 kb on + strand, within BACOVA_02600 at 368.963 kb on - strand, within BACOVA_02600 at 368.966 kb on + strand, within BACOVA_02600 at 368.966 kb on + strand, within BACOVA_02600 at 369.222 kb on + strand at 369.261 kb on + strand at 369.262 kb on - strand at 369.268 kb on + strand at 369.358 kb on + strand at 369.369 kb on - strand at 369.401 kb on + strand at 369.403 kb on + strand at 369.403 kb on + strand at 369.431 kb on + strand at 369.458 kb on + strand at 369.472 kb on + strand at 369.478 kb on + strand at 369.481 kb on - strand at 369.484 kb on + strand at 369.484 kb on + strand at 369.517 kb on + strand, within BACOVA_02601 at 369.550 kb on + strand, within BACOVA_02601 at 369.551 kb on - strand, within BACOVA_02601 at 369.594 kb on - strand, within BACOVA_02601 at 369.656 kb on - strand at 369.787 kb on + strand, within BACOVA_02602 at 369.787 kb on + strand, within BACOVA_02602 at 369.816 kb on + strand, within BACOVA_02602 at 369.817 kb on - strand, within BACOVA_02602 at 369.850 kb on - strand, within BACOVA_02602 at 369.862 kb on + strand, within BACOVA_02602 at 369.863 kb on - strand, within BACOVA_02602 at 369.944 kb on + strand, within BACOVA_02602 at 370.090 kb on - strand at 370.090 kb on - strand at 370.090 kb on - strand at 370.151 kb on + strand at 370.158 kb on + strand at 370.217 kb on + strand at 370.217 kb on + strand at 370.455 kb on + strand, within BACOVA_02603 at 370.488 kb on + strand, within BACOVA_02603 at 370.510 kb on + strand, within BACOVA_02603 at 370.526 kb on + strand, within BACOVA_02603 at 370.581 kb on + strand, within BACOVA_02603 at 370.603 kb on + strand, within BACOVA_02603 at 370.603 kb on + strand, within BACOVA_02603 at 370.605 kb on + strand, within BACOVA_02603 at 370.752 kb on + strand, within BACOVA_02603 at 370.756 kb on + strand, within BACOVA_02603 at 370.862 kb on + strand, within BACOVA_02603 at 370.888 kb on + strand, within BACOVA_02603 at 370.888 kb on + strand, within BACOVA_02603 at 370.888 kb on + strand, within BACOVA_02603 at 370.888 kb on + strand, within BACOVA_02603 at 370.888 kb on + strand, within BACOVA_02603 at 370.888 kb on + strand, within BACOVA_02603 at 370.888 kb on + strand, within BACOVA_02603 at 370.890 kb on + strand, within BACOVA_02603 at 370.890 kb on + strand, within BACOVA_02603 at 370.925 kb on + strand, within BACOVA_02603 at 370.925 kb on + strand, within BACOVA_02603
Per-strain Table
Position Strand Gene LocusTag Fraction Glucomannan (konjac) 2.5 mg/ml (C) remove 368,700 + BACOVA_02599 0.58 +3.1 368,723 + BACOVA_02599 0.65 -0.9 368,724 - BACOVA_02599 0.66 -0.5 368,755 + BACOVA_02599 0.76 -2.1 368,756 - BACOVA_02599 0.76 +1.1 368,785 + BACOVA_02599 0.86 +0.9 368,798 + +1.1 368,835 - +0.4 368,843 + -0.6 368,844 - -0.1 368,846 + +0.3 368,962 + BACOVA_02600 0.28 -1.0 368,963 - BACOVA_02600 0.29 -0.5 368,966 + BACOVA_02600 0.29 -0.3 368,966 + BACOVA_02600 0.29 +1.2 369,222 + -0.9 369,261 + +0.3 369,262 - +0.9 369,268 + +0.7 369,358 + -0.1 369,369 - -2.0 369,401 + -0.1 369,403 + -0.1 369,403 + +0.4 369,431 + +1.1 369,458 + +0.2 369,472 + -0.1 369,478 + +0.4 369,481 - +1.4 369,484 + +0.2 369,484 + +0.5 369,517 + BACOVA_02601 0.15 +0.7 369,550 + BACOVA_02601 0.34 -1.5 369,551 - BACOVA_02601 0.34 +0.6 369,594 - BACOVA_02601 0.59 +1.3 369,656 - +2.0 369,787 + BACOVA_02602 0.30 -0.5 369,787 + BACOVA_02602 0.30 -1.6 369,816 + BACOVA_02602 0.40 -0.7 369,817 - BACOVA_02602 0.40 -1.5 369,850 - BACOVA_02602 0.51 -0.7 369,862 + BACOVA_02602 0.55 +0.9 369,863 - BACOVA_02602 0.56 -0.1 369,944 + BACOVA_02602 0.83 -3.4 370,090 - -0.1 370,090 - -1.1 370,090 - +0.9 370,151 + +2.0 370,158 + -0.7 370,217 + -1.8 370,217 + -0.6 370,455 + BACOVA_02603 0.17 +0.5 370,488 + BACOVA_02603 0.20 +0.7 370,510 + BACOVA_02603 0.22 +0.4 370,526 + BACOVA_02603 0.23 +0.5 370,581 + BACOVA_02603 0.28 -1.3 370,603 + BACOVA_02603 0.30 +0.7 370,603 + BACOVA_02603 0.30 +0.6 370,605 + BACOVA_02603 0.30 +0.9 370,752 + BACOVA_02603 0.44 +0.2 370,756 + BACOVA_02603 0.44 +1.1 370,862 + BACOVA_02603 0.54 +0.3 370,888 + BACOVA_02603 0.56 +0.9 370,888 + BACOVA_02603 0.56 +1.3 370,888 + BACOVA_02603 0.56 +0.3 370,888 + BACOVA_02603 0.56 -1.5 370,888 + BACOVA_02603 0.56 +1.7 370,888 + BACOVA_02603 0.56 -0.1 370,888 + BACOVA_02603 0.56 -1.0 370,890 + BACOVA_02603 0.56 -0.7 370,890 + BACOVA_02603 0.56 +0.0 370,925 + BACOVA_02603 0.60 -0.7 370,925 + BACOVA_02603 0.60 -0.2
Or see this region's nucleotide sequence