Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_01544

Experiment: Glucomannan (konjac) 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_01543 and BACOVA_01544 are separated by 1 nucleotidesBACOVA_01544 and BACOVA_01545 are separated by 17 nucleotidesBACOVA_01545 and BACOVA_01546 are separated by 52 nucleotides BACOVA_01543: BACOVA_01543 - hypothetical protein, at 41,900 to 44,467 _01543 BACOVA_01544: BACOVA_01544 - Fibrobacter succinogene major paralogous domain protein, at 44,469 to 46,520 _01544 BACOVA_01545: BACOVA_01545 - hypothetical protein, at 46,538 to 47,362 _01545 BACOVA_01546: BACOVA_01546 - hypothetical protein, at 47,415 to 47,666 _01546 Position (kb) 44 45 46 47Strain fitness (log2 ratio) -2 -1 0 1 2 3at 43.473 kb on - strand, within BACOVA_01543at 43.493 kb on + strand, within BACOVA_01543at 43.494 kb on - strand, within BACOVA_01543at 43.519 kb on + strand, within BACOVA_01543at 43.519 kb on + strand, within BACOVA_01543at 43.525 kb on + strand, within BACOVA_01543at 43.525 kb on + strand, within BACOVA_01543at 43.525 kb on + strand, within BACOVA_01543at 43.526 kb on - strand, within BACOVA_01543at 43.563 kb on - strand, within BACOVA_01543at 43.574 kb on + strand, within BACOVA_01543at 43.575 kb on - strand, within BACOVA_01543at 43.589 kb on - strand, within BACOVA_01543at 43.610 kb on - strand, within BACOVA_01543at 43.640 kb on + strand, within BACOVA_01543at 43.640 kb on + strand, within BACOVA_01543at 43.641 kb on - strand, within BACOVA_01543at 43.641 kb on - strand, within BACOVA_01543at 43.641 kb on - strand, within BACOVA_01543at 43.677 kb on + strand, within BACOVA_01543at 43.683 kb on + strand, within BACOVA_01543at 43.693 kb on - strand, within BACOVA_01543at 43.733 kb on + strand, within BACOVA_01543at 43.733 kb on + strand, within BACOVA_01543at 43.739 kb on + strand, within BACOVA_01543at 43.741 kb on + strand, within BACOVA_01543at 43.816 kb on + strand, within BACOVA_01543at 43.817 kb on - strand, within BACOVA_01543at 43.817 kb on - strand, within BACOVA_01543at 43.817 kb on - strand, within BACOVA_01543at 43.817 kb on - strand, within BACOVA_01543at 43.852 kb on + strand, within BACOVA_01543at 43.852 kb on + strand, within BACOVA_01543at 43.853 kb on - strand, within BACOVA_01543at 43.883 kb on + strand, within BACOVA_01543at 43.898 kb on + strand, within BACOVA_01543at 43.898 kb on + strand, within BACOVA_01543at 43.898 kb on + strand, within BACOVA_01543at 43.899 kb on - strand, within BACOVA_01543at 43.899 kb on - strand, within BACOVA_01543at 43.922 kb on - strand, within BACOVA_01543at 44.029 kb on - strand, within BACOVA_01543at 44.029 kb on - strand, within BACOVA_01543at 44.029 kb on - strand, within BACOVA_01543at 44.029 kb on - strand, within BACOVA_01543at 44.084 kb on + strand, within BACOVA_01543at 44.098 kb on - strand, within BACOVA_01543at 44.142 kb on + strand, within BACOVA_01543at 44.157 kb on + strand, within BACOVA_01543at 44.202 kb on + strand, within BACOVA_01543at 44.232 kb on - strandat 44.232 kb on - strandat 44.254 kb on + strandat 44.354 kb on + strandat 44.382 kb on + strandat 44.393 kb on - strandat 44.400 kb on - strandat 44.400 kb on - strandat 44.411 kb on + strandat 44.415 kb on - strandat 44.423 kb on + strandat 44.423 kb on + strandat 44.451 kb on - strandat 44.488 kb on - strandat 44.520 kb on + strandat 44.521 kb on - strandat 44.522 kb on + strandat 44.547 kb on + strandat 44.547 kb on + strandat 44.550 kb on + strandat 44.555 kb on + strandat 44.555 kb on + strandat 44.555 kb on + strandat 44.556 kb on - strandat 44.567 kb on + strandat 44.568 kb on - strandat 44.568 kb on - strandat 44.580 kb on - strandat 44.580 kb on - strandat 44.609 kb on - strandat 44.610 kb on + strandat 44.611 kb on - strandat 44.633 kb on + strandat 44.642 kb on + strandat 44.643 kb on - strandat 44.652 kb on + strandat 44.655 kb on + strandat 44.655 kb on + strandat 44.656 kb on - strandat 44.683 kb on + strand, within BACOVA_01544at 44.683 kb on + strand, within BACOVA_01544at 44.683 kb on + strand, within BACOVA_01544at 44.683 kb on + strand, within BACOVA_01544at 44.684 kb on - strand, within BACOVA_01544at 44.687 kb on + strand, within BACOVA_01544at 44.711 kb on - strand, within BACOVA_01544at 44.759 kb on - strand, within BACOVA_01544at 44.761 kb on + strand, within BACOVA_01544at 44.837 kb on + strand, within BACOVA_01544at 44.844 kb on + strand, within BACOVA_01544at 44.845 kb on - strand, within BACOVA_01544at 44.864 kb on + strand, within BACOVA_01544at 44.866 kb on + strand, within BACOVA_01544at 44.866 kb on + strand, within BACOVA_01544at 44.866 kb on + strand, within BACOVA_01544at 44.866 kb on + strand, within BACOVA_01544at 44.885 kb on + strand, within BACOVA_01544at 44.924 kb on + strand, within BACOVA_01544at 44.924 kb on + strand, within BACOVA_01544at 44.925 kb on - strand, within BACOVA_01544at 44.941 kb on - strand, within BACOVA_01544at 44.941 kb on - strand, within BACOVA_01544at 44.943 kb on - strand, within BACOVA_01544at 44.945 kb on + strand, within BACOVA_01544at 44.946 kb on + strand, within BACOVA_01544at 44.946 kb on - strand, within BACOVA_01544at 44.948 kb on + strand, within BACOVA_01544at 45.092 kb on + strand, within BACOVA_01544at 45.096 kb on - strand, within BACOVA_01544at 45.112 kb on + strand, within BACOVA_01544at 45.112 kb on + strand, within BACOVA_01544at 45.113 kb on - strand, within BACOVA_01544at 45.113 kb on - strand, within BACOVA_01544at 45.113 kb on - strand, within BACOVA_01544at 45.113 kb on - strand, within BACOVA_01544at 45.116 kb on + strand, within BACOVA_01544at 45.117 kb on - strand, within BACOVA_01544at 45.117 kb on - strand, within BACOVA_01544at 45.121 kb on + strand, within BACOVA_01544at 45.121 kb on + strand, within BACOVA_01544at 45.121 kb on + strand, within BACOVA_01544at 45.121 kb on + strand, within BACOVA_01544at 45.161 kb on + strand, within BACOVA_01544at 45.255 kb on + strand, within BACOVA_01544at 45.256 kb on - strand, within BACOVA_01544at 45.285 kb on + strand, within BACOVA_01544at 45.286 kb on - strand, within BACOVA_01544at 45.294 kb on - strand, within BACOVA_01544at 45.294 kb on - strand, within BACOVA_01544at 45.295 kb on + strand, within BACOVA_01544at 45.295 kb on + strand, within BACOVA_01544at 45.295 kb on + strand, within BACOVA_01544at 45.295 kb on + strand, within BACOVA_01544at 45.336 kb on - strand, within BACOVA_01544at 45.355 kb on - strand, within BACOVA_01544at 45.383 kb on + strand, within BACOVA_01544at 45.459 kb on + strand, within BACOVA_01544at 45.461 kb on + strand, within BACOVA_01544at 45.462 kb on - strand, within BACOVA_01544at 45.462 kb on - strand, within BACOVA_01544at 45.462 kb on - strand, within BACOVA_01544at 45.465 kb on + strand, within BACOVA_01544at 45.465 kb on + strand, within BACOVA_01544at 45.483 kb on + strand, within BACOVA_01544at 45.490 kb on + strand, within BACOVA_01544at 45.491 kb on - strand, within BACOVA_01544at 45.507 kb on + strand, within BACOVA_01544at 45.538 kb on - strand, within BACOVA_01544at 45.606 kb on + strand, within BACOVA_01544at 45.624 kb on - strand, within BACOVA_01544at 45.659 kb on + strand, within BACOVA_01544at 45.676 kb on - strand, within BACOVA_01544at 45.681 kb on + strand, within BACOVA_01544at 45.686 kb on + strand, within BACOVA_01544at 45.687 kb on - strand, within BACOVA_01544at 45.687 kb on - strand, within BACOVA_01544at 45.705 kb on + strand, within BACOVA_01544at 45.706 kb on - strand, within BACOVA_01544at 45.716 kb on + strand, within BACOVA_01544at 45.824 kb on + strand, within BACOVA_01544at 45.844 kb on + strand, within BACOVA_01544at 45.845 kb on - strand, within BACOVA_01544at 45.912 kb on + strand, within BACOVA_01544at 45.913 kb on - strand, within BACOVA_01544at 45.952 kb on + strand, within BACOVA_01544at 45.953 kb on - strand, within BACOVA_01544at 45.953 kb on - strand, within BACOVA_01544at 46.042 kb on + strand, within BACOVA_01544at 46.042 kb on + strand, within BACOVA_01544at 46.067 kb on + strand, within BACOVA_01544at 46.069 kb on + strand, within BACOVA_01544at 46.094 kb on + strand, within BACOVA_01544at 46.095 kb on - strand, within BACOVA_01544at 46.164 kb on + strand, within BACOVA_01544at 46.167 kb on - strand, within BACOVA_01544at 46.175 kb on + strand, within BACOVA_01544at 46.197 kb on + strand, within BACOVA_01544at 46.207 kb on + strand, within BACOVA_01544at 46.253 kb on + strand, within BACOVA_01544at 46.254 kb on - strand, within BACOVA_01544at 46.254 kb on - strand, within BACOVA_01544at 46.255 kb on + strand, within BACOVA_01544at 46.255 kb on + strand, within BACOVA_01544at 46.256 kb on - strand, within BACOVA_01544at 46.288 kb on + strand, within BACOVA_01544at 46.291 kb on + strand, within BACOVA_01544at 46.325 kb on - strandat 46.397 kb on + strandat 46.494 kb on + strandat 46.494 kb on + strandat 46.494 kb on + strandat 46.496 kb on + strandat 46.497 kb on - strandat 46.497 kb on - strandat 46.498 kb on + strandat 46.508 kb on - strandat 46.508 kb on - strandat 46.508 kb on - strandat 46.564 kb on + strandat 46.608 kb on - strandat 46.696 kb on + strand, within BACOVA_01545at 46.697 kb on - strand, within BACOVA_01545at 46.707 kb on + strand, within BACOVA_01545at 46.843 kb on - strand, within BACOVA_01545at 46.845 kb on + strand, within BACOVA_01545at 46.858 kb on + strand, within BACOVA_01545at 46.896 kb on + strand, within BACOVA_01545at 46.897 kb on - strand, within BACOVA_01545at 46.987 kb on + strand, within BACOVA_01545at 46.987 kb on + strand, within BACOVA_01545at 46.988 kb on - strand, within BACOVA_01545at 47.086 kb on + strand, within BACOVA_01545at 47.086 kb on + strand, within BACOVA_01545at 47.087 kb on - strand, within BACOVA_01545at 47.208 kb on + strand, within BACOVA_01545at 47.208 kb on + strand, within BACOVA_01545at 47.366 kb on - strandat 47.368 kb on - strandat 47.368 kb on - strandat 47.388 kb on + strandat 47.448 kb on - strand, within BACOVA_01546at 47.466 kb on + strand, within BACOVA_01546at 47.512 kb on + strand, within BACOVA_01546at 47.512 kb on + strand, within BACOVA_01546at 47.513 kb on - strand, within BACOVA_01546at 47.518 kb on - strand, within BACOVA_01546

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucomannan (konjac) 2.5 mg/ml (C)
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43,473 - BACOVA_01543 0.61 +1.1
43,493 + BACOVA_01543 0.62 +0.1
43,494 - BACOVA_01543 0.62 -0.2
43,519 + BACOVA_01543 0.63 -2.3
43,519 + BACOVA_01543 0.63 +1.1
43,525 + BACOVA_01543 0.63 -0.1
43,525 + BACOVA_01543 0.63 -1.5
43,525 + BACOVA_01543 0.63 -0.6
43,526 - BACOVA_01543 0.63 +1.1
43,563 - BACOVA_01543 0.65 +0.8
43,574 + BACOVA_01543 0.65 +0.6
43,575 - BACOVA_01543 0.65 +2.1
43,589 - BACOVA_01543 0.66 +0.1
43,610 - BACOVA_01543 0.67 -0.1
43,640 + BACOVA_01543 0.68 +1.1
43,640 + BACOVA_01543 0.68 +0.2
43,641 - BACOVA_01543 0.68 +0.2
43,641 - BACOVA_01543 0.68 -0.3
43,641 - BACOVA_01543 0.68 -0.4
43,677 + BACOVA_01543 0.69 -1.6
43,683 + BACOVA_01543 0.69 -0.3
43,693 - BACOVA_01543 0.70 +1.6
43,733 + BACOVA_01543 0.71 +0.7
43,733 + BACOVA_01543 0.71 -2.1
43,739 + BACOVA_01543 0.72 -0.5
43,741 + BACOVA_01543 0.72 +0.6
43,816 + BACOVA_01543 0.75 +1.9
43,817 - BACOVA_01543 0.75 +0.8
43,817 - BACOVA_01543 0.75 +0.7
43,817 - BACOVA_01543 0.75 +1.5
43,817 - BACOVA_01543 0.75 +0.9
43,852 + BACOVA_01543 0.76 +0.3
43,852 + BACOVA_01543 0.76 -0.3
43,853 - BACOVA_01543 0.76 +0.5
43,883 + BACOVA_01543 0.77 +0.1
43,898 + BACOVA_01543 0.78 -0.5
43,898 + BACOVA_01543 0.78 -0.6
43,898 + BACOVA_01543 0.78 -0.6
43,899 - BACOVA_01543 0.78 +1.6
43,899 - BACOVA_01543 0.78 -0.4
43,922 - BACOVA_01543 0.79 -0.3
44,029 - BACOVA_01543 0.83 +0.3
44,029 - BACOVA_01543 0.83 -0.5
44,029 - BACOVA_01543 0.83 +0.0
44,029 - BACOVA_01543 0.83 -1.3
44,084 + BACOVA_01543 0.85 +0.2
44,098 - BACOVA_01543 0.86 +1.1
44,142 + BACOVA_01543 0.87 -0.7
44,157 + BACOVA_01543 0.88 +0.0
44,202 + BACOVA_01543 0.90 +1.6
44,232 - +0.2
44,232 - -1.3
44,254 + +0.8
44,354 + -0.1
44,382 + -1.5
44,393 - +0.3
44,400 - +0.8
44,400 - -0.5
44,411 + +0.0
44,415 - +1.2
44,423 + -0.5
44,423 + -0.1
44,451 - +0.3
44,488 - +1.5
44,520 + +0.6
44,521 - +1.3
44,522 + +0.5
44,547 + +0.8
44,547 + +0.9
44,550 + -0.9
44,555 + -0.1
44,555 + +2.1
44,555 + -0.4
44,556 - +1.9
44,567 + -0.4
44,568 - +3.3
44,568 - +1.1
44,580 - +0.6
44,580 - +0.8
44,609 - +0.1
44,610 + -0.1
44,611 - +1.4
44,633 + -0.9
44,642 + -1.0
44,643 - +0.6
44,652 + -0.9
44,655 + -0.3
44,655 + +0.0
44,656 - +2.1
44,683 + BACOVA_01544 0.10 +0.6
44,683 + BACOVA_01544 0.10 +0.2
44,683 + BACOVA_01544 0.10 -1.5
44,683 + BACOVA_01544 0.10 +0.4
44,684 - BACOVA_01544 0.10 +1.6
44,687 + BACOVA_01544 0.11 -0.0
44,711 - BACOVA_01544 0.12 +0.3
44,759 - BACOVA_01544 0.14 +1.3
44,761 + BACOVA_01544 0.14 -2.6
44,837 + BACOVA_01544 0.18 +0.1
44,844 + BACOVA_01544 0.18 +1.8
44,845 - BACOVA_01544 0.18 +1.3
44,864 + BACOVA_01544 0.19 +1.1
44,866 + BACOVA_01544 0.19 -0.1
44,866 + BACOVA_01544 0.19 +1.4
44,866 + BACOVA_01544 0.19 -0.1
44,866 + BACOVA_01544 0.19 -0.8
44,885 + BACOVA_01544 0.20 -1.9
44,924 + BACOVA_01544 0.22 -0.0
44,924 + BACOVA_01544 0.22 -0.6
44,925 - BACOVA_01544 0.22 +2.8
44,941 - BACOVA_01544 0.23 -0.2
44,941 - BACOVA_01544 0.23 +1.5
44,943 - BACOVA_01544 0.23 +0.9
44,945 + BACOVA_01544 0.23 -0.2
44,946 + BACOVA_01544 0.23 +0.8
44,946 - BACOVA_01544 0.23 +1.1
44,948 + BACOVA_01544 0.23 +0.2
45,092 + BACOVA_01544 0.30 -0.3
45,096 - BACOVA_01544 0.31 +1.9
45,112 + BACOVA_01544 0.31 +0.5
45,112 + BACOVA_01544 0.31 +1.1
45,113 - BACOVA_01544 0.31 +0.9
45,113 - BACOVA_01544 0.31 +0.2
45,113 - BACOVA_01544 0.31 -0.1
45,113 - BACOVA_01544 0.31 +0.7
45,116 + BACOVA_01544 0.32 -1.6
45,117 - BACOVA_01544 0.32 -0.9
45,117 - BACOVA_01544 0.32 +1.1
45,121 + BACOVA_01544 0.32 +0.4
45,121 + BACOVA_01544 0.32 -0.3
45,121 + BACOVA_01544 0.32 +1.4
45,121 + BACOVA_01544 0.32 -0.6
45,161 + BACOVA_01544 0.34 -0.5
45,255 + BACOVA_01544 0.38 -0.5
45,256 - BACOVA_01544 0.38 +0.1
45,285 + BACOVA_01544 0.40 +1.8
45,286 - BACOVA_01544 0.40 +1.2
45,294 - BACOVA_01544 0.40 +1.4
45,294 - BACOVA_01544 0.40 +1.5
45,295 + BACOVA_01544 0.40 -1.1
45,295 + BACOVA_01544 0.40 -1.7
45,295 + BACOVA_01544 0.40 -1.1
45,295 + BACOVA_01544 0.40 +0.2
45,336 - BACOVA_01544 0.42 +1.1
45,355 - BACOVA_01544 0.43 +1.1
45,383 + BACOVA_01544 0.45 -0.4
45,459 + BACOVA_01544 0.48 -0.7
45,461 + BACOVA_01544 0.48 -0.4
45,462 - BACOVA_01544 0.48 +0.5
45,462 - BACOVA_01544 0.48 +0.6
45,462 - BACOVA_01544 0.48 +1.2
45,465 + BACOVA_01544 0.49 -0.4
45,465 + BACOVA_01544 0.49 -0.4
45,483 + BACOVA_01544 0.49 +0.3
45,490 + BACOVA_01544 0.50 +1.1
45,491 - BACOVA_01544 0.50 -0.1
45,507 + BACOVA_01544 0.51 +0.6
45,538 - BACOVA_01544 0.52 +1.6
45,606 + BACOVA_01544 0.55 +0.1
45,624 - BACOVA_01544 0.56 +0.2
45,659 + BACOVA_01544 0.58 +0.8
45,676 - BACOVA_01544 0.59 +1.0
45,681 + BACOVA_01544 0.59 -0.5
45,686 + BACOVA_01544 0.59 -0.9
45,687 - BACOVA_01544 0.59 -0.2
45,687 - BACOVA_01544 0.59 +0.3
45,705 + BACOVA_01544 0.60 +0.1
45,706 - BACOVA_01544 0.60 -0.7
45,716 + BACOVA_01544 0.61 -0.4
45,824 + BACOVA_01544 0.66 +1.5
45,844 + BACOVA_01544 0.67 -1.7
45,845 - BACOVA_01544 0.67 +1.1
45,912 + BACOVA_01544 0.70 +0.2
45,913 - BACOVA_01544 0.70 +1.3
45,952 + BACOVA_01544 0.72 +0.3
45,953 - BACOVA_01544 0.72 +2.2
45,953 - BACOVA_01544 0.72 +1.1
46,042 + BACOVA_01544 0.77 -0.1
46,042 + BACOVA_01544 0.77 -0.0
46,067 + BACOVA_01544 0.78 +1.3
46,069 + BACOVA_01544 0.78 -0.4
46,094 + BACOVA_01544 0.79 -0.2
46,095 - BACOVA_01544 0.79 +0.5
46,164 + BACOVA_01544 0.83 +0.4
46,167 - BACOVA_01544 0.83 -0.3
46,175 + BACOVA_01544 0.83 +0.8
46,197 + BACOVA_01544 0.84 +1.5
46,207 + BACOVA_01544 0.85 +0.4
46,253 + BACOVA_01544 0.87 -0.5
46,254 - BACOVA_01544 0.87 -1.7
46,254 - BACOVA_01544 0.87 +0.9
46,255 + BACOVA_01544 0.87 +0.8
46,255 + BACOVA_01544 0.87 -0.4
46,256 - BACOVA_01544 0.87 +0.9
46,288 + BACOVA_01544 0.89 -0.0
46,291 + BACOVA_01544 0.89 +0.7
46,325 - +0.2
46,397 + -0.6
46,494 + -0.5
46,494 + +1.1
46,494 + -0.6
46,496 + -0.5
46,497 - +1.6
46,497 - -0.1
46,498 + -0.8
46,508 - -0.3
46,508 - +1.1
46,508 - +0.8
46,564 + -0.2
46,608 - +0.6
46,696 + BACOVA_01545 0.19 +0.3
46,697 - BACOVA_01545 0.19 +1.2
46,707 + BACOVA_01545 0.20 +0.6
46,843 - BACOVA_01545 0.37 +2.3
46,845 + BACOVA_01545 0.37 +0.5
46,858 + BACOVA_01545 0.39 +0.8
46,896 + BACOVA_01545 0.43 +0.0
46,897 - BACOVA_01545 0.44 -0.1
46,987 + BACOVA_01545 0.54 -0.7
46,987 + BACOVA_01545 0.54 -0.0
46,988 - BACOVA_01545 0.55 +1.7
47,086 + BACOVA_01545 0.66 -1.1
47,086 + BACOVA_01545 0.66 -1.4
47,087 - BACOVA_01545 0.67 +0.8
47,208 + BACOVA_01545 0.81 +1.1
47,208 + BACOVA_01545 0.81 +0.6
47,366 - +1.9
47,368 - +1.6
47,368 - +0.9
47,388 + -0.9
47,448 - BACOVA_01546 0.13 +0.9
47,466 + BACOVA_01546 0.20 +0.9
47,512 + BACOVA_01546 0.38 -0.6
47,512 + BACOVA_01546 0.38 -2.3
47,513 - BACOVA_01546 0.39 +0.5
47,518 - BACOVA_01546 0.41 +1.2

Or see this region's nucleotide sequence