Experiment: Glucomannan (konjac) 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_00124 and BACOVA_00125 are separated by 61 nucleotides BACOVA_00125 and BACOVA_00126 overlap by 8 nucleotides BACOVA_00126 and BACOVA_00127 are separated by 21 nucleotides BACOVA_00127 and BACOVA_00128 are separated by 3 nucleotides
BACOVA_00124: BACOVA_00124 - ABC transporter, ATP-binding protein, at 171,099 to 171,944
_00124
BACOVA_00125: BACOVA_00125 - hypothetical protein, at 172,006 to 172,125
_00125
BACOVA_00126: BACOVA_00126 - tetratricopeptide repeat protein, at 172,118 to 173,584
_00126
BACOVA_00127: BACOVA_00127 - hypothetical protein, at 173,606 to 174,550
_00127
BACOVA_00128: BACOVA_00128 - TonB-dependent receptor, at 174,554 to 175,369
_00128
Position (kb) 172
173
174 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 171.140 kb on + strand at 171.201 kb on - strand, within BACOVA_00124 at 171.228 kb on - strand, within BACOVA_00124 at 171.231 kb on - strand, within BACOVA_00124 at 171.303 kb on - strand, within BACOVA_00124 at 171.392 kb on + strand, within BACOVA_00124 at 171.392 kb on + strand, within BACOVA_00124 at 171.410 kb on + strand, within BACOVA_00124 at 171.423 kb on - strand, within BACOVA_00124 at 171.432 kb on + strand, within BACOVA_00124 at 171.433 kb on - strand, within BACOVA_00124 at 171.434 kb on + strand, within BACOVA_00124 at 171.513 kb on - strand, within BACOVA_00124 at 171.555 kb on - strand, within BACOVA_00124 at 171.575 kb on + strand, within BACOVA_00124 at 171.576 kb on - strand, within BACOVA_00124 at 171.579 kb on + strand, within BACOVA_00124 at 171.579 kb on + strand, within BACOVA_00124 at 171.579 kb on + strand, within BACOVA_00124 at 171.608 kb on + strand, within BACOVA_00124 at 171.623 kb on + strand, within BACOVA_00124 at 171.651 kb on + strand, within BACOVA_00124 at 171.661 kb on + strand, within BACOVA_00124 at 171.661 kb on + strand, within BACOVA_00124 at 171.662 kb on - strand, within BACOVA_00124 at 171.753 kb on - strand, within BACOVA_00124 at 171.806 kb on - strand, within BACOVA_00124 at 171.850 kb on + strand, within BACOVA_00124 at 171.851 kb on - strand, within BACOVA_00124 at 171.851 kb on - strand, within BACOVA_00124 at 171.852 kb on + strand, within BACOVA_00124 at 171.888 kb on + strand at 171.892 kb on - strand at 171.909 kb on - strand at 171.938 kb on + strand at 171.944 kb on + strand at 171.947 kb on + strand at 171.947 kb on + strand at 171.947 kb on + strand at 171.948 kb on - strand at 171.983 kb on + strand at 171.991 kb on + strand at 171.991 kb on + strand at 172.069 kb on - strand, within BACOVA_00125 at 172.120 kb on - strand at 172.167 kb on - strand at 172.167 kb on - strand at 172.188 kb on + strand at 172.188 kb on + strand at 172.189 kb on - strand at 172.194 kb on - strand at 172.201 kb on + strand at 172.210 kb on + strand at 172.210 kb on + strand at 172.246 kb on + strand at 172.247 kb on - strand at 172.247 kb on - strand at 172.260 kb on + strand at 172.263 kb on + strand at 172.263 kb on + strand at 172.278 kb on + strand, within BACOVA_00126 at 172.279 kb on - strand, within BACOVA_00126 at 172.347 kb on + strand, within BACOVA_00126 at 172.347 kb on + strand, within BACOVA_00126 at 172.392 kb on - strand, within BACOVA_00126 at 172.425 kb on + strand, within BACOVA_00126 at 172.426 kb on - strand, within BACOVA_00126 at 172.426 kb on - strand, within BACOVA_00126 at 172.529 kb on - strand, within BACOVA_00126 at 172.540 kb on - strand, within BACOVA_00126 at 172.542 kb on + strand, within BACOVA_00126 at 172.543 kb on - strand, within BACOVA_00126 at 172.550 kb on - strand, within BACOVA_00126 at 172.603 kb on - strand, within BACOVA_00126 at 172.605 kb on + strand, within BACOVA_00126 at 172.633 kb on + strand, within BACOVA_00126 at 172.634 kb on - strand, within BACOVA_00126 at 172.636 kb on - strand, within BACOVA_00126 at 172.654 kb on - strand, within BACOVA_00126 at 172.721 kb on + strand, within BACOVA_00126 at 172.722 kb on - strand, within BACOVA_00126 at 172.722 kb on - strand, within BACOVA_00126 at 172.725 kb on - strand, within BACOVA_00126 at 172.768 kb on - strand, within BACOVA_00126 at 172.771 kb on - strand, within BACOVA_00126 at 172.771 kb on - strand, within BACOVA_00126 at 172.777 kb on - strand, within BACOVA_00126 at 172.791 kb on + strand, within BACOVA_00126 at 172.802 kb on - strand, within BACOVA_00126 at 172.866 kb on + strand, within BACOVA_00126 at 172.867 kb on - strand, within BACOVA_00126 at 172.870 kb on + strand, within BACOVA_00126 at 172.872 kb on + strand, within BACOVA_00126 at 172.924 kb on + strand, within BACOVA_00126 at 172.924 kb on + strand, within BACOVA_00126 at 172.927 kb on + strand, within BACOVA_00126 at 172.928 kb on - strand, within BACOVA_00126 at 172.946 kb on - strand, within BACOVA_00126 at 173.031 kb on + strand, within BACOVA_00126 at 173.039 kb on + strand, within BACOVA_00126 at 173.048 kb on - strand, within BACOVA_00126 at 173.070 kb on + strand, within BACOVA_00126 at 173.093 kb on + strand, within BACOVA_00126 at 173.169 kb on + strand, within BACOVA_00126 at 173.173 kb on + strand, within BACOVA_00126 at 173.173 kb on + strand, within BACOVA_00126 at 173.181 kb on + strand, within BACOVA_00126 at 173.275 kb on + strand, within BACOVA_00126 at 173.288 kb on + strand, within BACOVA_00126 at 173.309 kb on - strand, within BACOVA_00126 at 173.337 kb on + strand, within BACOVA_00126 at 173.374 kb on - strand, within BACOVA_00126 at 173.529 kb on + strand at 173.540 kb on + strand at 173.541 kb on - strand at 173.547 kb on - strand at 173.561 kb on + strand at 173.594 kb on + strand at 173.595 kb on - strand at 173.604 kb on + strand at 173.607 kb on + strand at 173.607 kb on + strand at 173.608 kb on - strand at 173.629 kb on + strand at 173.669 kb on + strand at 173.751 kb on + strand, within BACOVA_00127 at 173.772 kb on + strand, within BACOVA_00127 at 173.776 kb on + strand, within BACOVA_00127 at 173.776 kb on + strand, within BACOVA_00127 at 173.777 kb on - strand, within BACOVA_00127 at 173.777 kb on - strand, within BACOVA_00127 at 173.781 kb on + strand, within BACOVA_00127 at 173.782 kb on - strand, within BACOVA_00127 at 173.790 kb on + strand, within BACOVA_00127 at 173.800 kb on - strand, within BACOVA_00127 at 173.806 kb on + strand, within BACOVA_00127 at 173.807 kb on - strand, within BACOVA_00127 at 173.808 kb on + strand, within BACOVA_00127 at 173.809 kb on - strand, within BACOVA_00127 at 173.887 kb on + strand, within BACOVA_00127 at 173.888 kb on - strand, within BACOVA_00127 at 173.913 kb on - strand, within BACOVA_00127 at 173.952 kb on + strand, within BACOVA_00127 at 173.952 kb on + strand, within BACOVA_00127 at 173.957 kb on + strand, within BACOVA_00127 at 173.992 kb on + strand, within BACOVA_00127 at 174.042 kb on - strand, within BACOVA_00127 at 174.103 kb on + strand, within BACOVA_00127 at 174.155 kb on + strand, within BACOVA_00127 at 174.156 kb on - strand, within BACOVA_00127 at 174.272 kb on - strand, within BACOVA_00127 at 174.320 kb on + strand, within BACOVA_00127 at 174.321 kb on - strand, within BACOVA_00127 at 174.326 kb on + strand, within BACOVA_00127 at 174.395 kb on + strand, within BACOVA_00127 at 174.395 kb on + strand, within BACOVA_00127 at 174.407 kb on + strand, within BACOVA_00127 at 174.440 kb on - strand, within BACOVA_00127 at 174.464 kb on - strand at 174.491 kb on - strand at 174.525 kb on - strand at 174.533 kb on - strand at 174.561 kb on - strand at 174.565 kb on + strand at 174.566 kb on - strand at 174.566 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glucomannan (konjac) 2.5 mg/ml (C) remove 171,140 + +1.3 171,201 - BACOVA_00124 0.12 +1.8 171,228 - BACOVA_00124 0.15 -1.3 171,231 - BACOVA_00124 0.16 +1.8 171,303 - BACOVA_00124 0.24 +0.9 171,392 + BACOVA_00124 0.35 +0.3 171,392 + BACOVA_00124 0.35 -0.9 171,410 + BACOVA_00124 0.37 +0.3 171,423 - BACOVA_00124 0.38 +0.8 171,432 + BACOVA_00124 0.39 +0.2 171,433 - BACOVA_00124 0.39 -2.1 171,434 + BACOVA_00124 0.40 +0.9 171,513 - BACOVA_00124 0.49 +1.4 171,555 - BACOVA_00124 0.54 +1.1 171,575 + BACOVA_00124 0.56 +0.0 171,576 - BACOVA_00124 0.56 -0.3 171,579 + BACOVA_00124 0.57 -1.1 171,579 + BACOVA_00124 0.57 -0.9 171,579 + BACOVA_00124 0.57 -0.0 171,608 + BACOVA_00124 0.60 -0.1 171,623 + BACOVA_00124 0.62 +1.1 171,651 + BACOVA_00124 0.65 +1.3 171,661 + BACOVA_00124 0.66 +1.4 171,661 + BACOVA_00124 0.66 -0.2 171,662 - BACOVA_00124 0.67 +1.3 171,753 - BACOVA_00124 0.77 +1.2 171,806 - BACOVA_00124 0.84 +0.2 171,850 + BACOVA_00124 0.89 -1.1 171,851 - BACOVA_00124 0.89 -1.3 171,851 - BACOVA_00124 0.89 +1.7 171,852 + BACOVA_00124 0.89 -0.7 171,888 + +0.4 171,892 - +1.3 171,909 - -0.7 171,938 + +1.1 171,944 + -0.5 171,947 + +0.9 171,947 + -0.3 171,947 + +0.1 171,948 - -0.9 171,983 + +1.2 171,991 + +0.2 171,991 + -0.2 172,069 - BACOVA_00125 0.53 +0.3 172,120 - -1.5 172,167 - +0.4 172,167 - -0.4 172,188 + +0.1 172,188 + -1.0 172,189 - -1.2 172,194 - -1.6 172,201 + +0.3 172,210 + -0.0 172,210 + -0.7 172,246 + -0.4 172,247 - -0.7 172,247 - -2.5 172,260 + -1.1 172,263 + +0.7 172,263 + +0.1 172,278 + BACOVA_00126 0.11 +0.2 172,279 - BACOVA_00126 0.11 -1.0 172,347 + BACOVA_00126 0.16 +0.2 172,347 + BACOVA_00126 0.16 +1.9 172,392 - BACOVA_00126 0.19 -2.3 172,425 + BACOVA_00126 0.21 +1.1 172,426 - BACOVA_00126 0.21 -1.3 172,426 - BACOVA_00126 0.21 -0.9 172,529 - BACOVA_00126 0.28 +0.1 172,540 - BACOVA_00126 0.29 -0.9 172,542 + BACOVA_00126 0.29 -1.1 172,543 - BACOVA_00126 0.29 -1.9 172,550 - BACOVA_00126 0.29 -1.6 172,603 - BACOVA_00126 0.33 +0.2 172,605 + BACOVA_00126 0.33 -1.7 172,633 + BACOVA_00126 0.35 -1.3 172,634 - BACOVA_00126 0.35 -2.6 172,636 - BACOVA_00126 0.35 -1.8 172,654 - BACOVA_00126 0.37 -1.6 172,721 + BACOVA_00126 0.41 -1.5 172,722 - BACOVA_00126 0.41 -3.4 172,722 - BACOVA_00126 0.41 -3.3 172,725 - BACOVA_00126 0.41 -1.3 172,768 - BACOVA_00126 0.44 -1.7 172,771 - BACOVA_00126 0.45 -0.6 172,771 - BACOVA_00126 0.45 -0.6 172,777 - BACOVA_00126 0.45 -3.5 172,791 + BACOVA_00126 0.46 +0.4 172,802 - BACOVA_00126 0.47 -4.1 172,866 + BACOVA_00126 0.51 +0.1 172,867 - BACOVA_00126 0.51 -3.1 172,870 + BACOVA_00126 0.51 -0.5 172,872 + BACOVA_00126 0.51 -0.3 172,924 + BACOVA_00126 0.55 +0.6 172,924 + BACOVA_00126 0.55 +0.9 172,927 + BACOVA_00126 0.55 -0.4 172,928 - BACOVA_00126 0.55 -1.0 172,946 - BACOVA_00126 0.56 -4.7 173,031 + BACOVA_00126 0.62 +1.1 173,039 + BACOVA_00126 0.63 -0.1 173,048 - BACOVA_00126 0.63 -1.5 173,070 + BACOVA_00126 0.65 +0.7 173,093 + BACOVA_00126 0.66 +0.6 173,169 + BACOVA_00126 0.72 -0.3 173,173 + BACOVA_00126 0.72 +0.3 173,173 + BACOVA_00126 0.72 -1.9 173,181 + BACOVA_00126 0.72 -1.0 173,275 + BACOVA_00126 0.79 -0.7 173,288 + BACOVA_00126 0.80 -1.4 173,309 - BACOVA_00126 0.81 -0.4 173,337 + BACOVA_00126 0.83 -2.2 173,374 - BACOVA_00126 0.86 +0.0 173,529 + -0.2 173,540 + +0.7 173,541 - -1.2 173,547 - -0.9 173,561 + -0.2 173,594 + -0.1 173,595 - -0.5 173,604 + -0.8 173,607 + +0.3 173,607 + -0.3 173,608 - -1.3 173,629 + -1.4 173,669 + -1.7 173,751 + BACOVA_00127 0.15 -0.9 173,772 + BACOVA_00127 0.18 -0.6 173,776 + BACOVA_00127 0.18 +0.9 173,776 + BACOVA_00127 0.18 +0.5 173,777 - BACOVA_00127 0.18 -2.4 173,777 - BACOVA_00127 0.18 -0.1 173,781 + BACOVA_00127 0.19 -0.8 173,782 - BACOVA_00127 0.19 -1.9 173,790 + BACOVA_00127 0.19 +0.1 173,800 - BACOVA_00127 0.21 +0.3 173,806 + BACOVA_00127 0.21 +0.7 173,807 - BACOVA_00127 0.21 -2.5 173,808 + BACOVA_00127 0.21 +0.3 173,809 - BACOVA_00127 0.21 -2.5 173,887 + BACOVA_00127 0.30 -0.5 173,888 - BACOVA_00127 0.30 -1.3 173,913 - BACOVA_00127 0.32 -1.4 173,952 + BACOVA_00127 0.37 +0.6 173,952 + BACOVA_00127 0.37 -0.3 173,957 + BACOVA_00127 0.37 +0.6 173,992 + BACOVA_00127 0.41 +0.3 174,042 - BACOVA_00127 0.46 +0.5 174,103 + BACOVA_00127 0.53 +0.4 174,155 + BACOVA_00127 0.58 -0.2 174,156 - BACOVA_00127 0.58 -1.9 174,272 - BACOVA_00127 0.70 -2.1 174,320 + BACOVA_00127 0.76 +0.5 174,321 - BACOVA_00127 0.76 -1.0 174,326 + BACOVA_00127 0.76 +1.7 174,395 + BACOVA_00127 0.83 +0.6 174,395 + BACOVA_00127 0.83 +0.8 174,407 + BACOVA_00127 0.85 -0.7 174,440 - BACOVA_00127 0.88 -0.8 174,464 - -0.3 174,491 - +1.3 174,525 - +0.1 174,533 - -0.7 174,561 - -2.4 174,565 + +0.6 174,566 - -2.6 174,566 - -0.9
Or see this region's nucleotide sequence