Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04298

Experiment: pectate 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04297 and BACOVA_04298 are separated by 148 nucleotidesBACOVA_04298 and BACOVA_04299 are separated by 169 nucleotides BACOVA_04297: BACOVA_04297 - alanine dehydrogenase, at 189,359 to 190,465 _04297 BACOVA_04298: BACOVA_04298 - oxidoreductase, 2-nitropropane dioxygenase family protein, at 190,614 to 191,552 _04298 BACOVA_04299: BACOVA_04299 - hypothetical protein, at 191,722 to 192,447 _04299 Position (kb) 190 191 192Strain fitness (log2 ratio) -2 -1 0 1 2at 189.627 kb on + strand, within BACOVA_04297at 189.628 kb on - strand, within BACOVA_04297at 189.630 kb on + strand, within BACOVA_04297at 189.697 kb on - strand, within BACOVA_04297at 189.717 kb on + strand, within BACOVA_04297at 189.775 kb on + strand, within BACOVA_04297at 189.776 kb on - strand, within BACOVA_04297at 189.776 kb on - strand, within BACOVA_04297at 189.776 kb on - strand, within BACOVA_04297at 189.776 kb on - strand, within BACOVA_04297at 189.776 kb on - strand, within BACOVA_04297at 189.776 kb on - strand, within BACOVA_04297at 189.776 kb on - strand, within BACOVA_04297at 189.846 kb on + strand, within BACOVA_04297at 189.847 kb on - strand, within BACOVA_04297at 189.847 kb on - strand, within BACOVA_04297at 189.871 kb on - strand, within BACOVA_04297at 189.894 kb on + strand, within BACOVA_04297at 189.895 kb on - strand, within BACOVA_04297at 190.002 kb on + strand, within BACOVA_04297at 190.002 kb on + strand, within BACOVA_04297at 190.003 kb on - strand, within BACOVA_04297at 190.013 kb on + strand, within BACOVA_04297at 190.013 kb on + strand, within BACOVA_04297at 190.014 kb on - strand, within BACOVA_04297at 190.059 kb on + strand, within BACOVA_04297at 190.090 kb on + strand, within BACOVA_04297at 190.147 kb on - strand, within BACOVA_04297at 190.149 kb on + strand, within BACOVA_04297at 190.150 kb on - strand, within BACOVA_04297at 190.150 kb on - strand, within BACOVA_04297at 190.152 kb on + strand, within BACOVA_04297at 190.153 kb on - strand, within BACOVA_04297at 190.158 kb on + strand, within BACOVA_04297at 190.158 kb on + strand, within BACOVA_04297at 190.220 kb on + strand, within BACOVA_04297at 190.220 kb on + strand, within BACOVA_04297at 190.227 kb on + strand, within BACOVA_04297at 190.227 kb on + strand, within BACOVA_04297at 190.227 kb on + strand, within BACOVA_04297at 190.227 kb on + strand, within BACOVA_04297at 190.244 kb on + strand, within BACOVA_04297at 190.252 kb on - strand, within BACOVA_04297at 190.256 kb on - strand, within BACOVA_04297at 190.278 kb on - strand, within BACOVA_04297at 190.307 kb on - strand, within BACOVA_04297at 190.317 kb on - strand, within BACOVA_04297at 190.375 kb on - strandat 190.414 kb on + strandat 190.415 kb on - strandat 190.454 kb on - strandat 190.463 kb on + strandat 190.463 kb on + strandat 190.463 kb on + strandat 190.464 kb on - strandat 190.464 kb on - strandat 190.483 kb on - strandat 190.483 kb on - strandat 190.524 kb on + strandat 190.524 kb on + strandat 190.543 kb on + strandat 190.544 kb on - strandat 190.589 kb on + strandat 190.592 kb on + strandat 190.593 kb on - strandat 190.607 kb on + strandat 190.615 kb on + strandat 190.672 kb on - strandat 190.785 kb on + strand, within BACOVA_04298at 190.786 kb on - strand, within BACOVA_04298at 190.895 kb on + strand, within BACOVA_04298at 190.898 kb on + strand, within BACOVA_04298at 190.925 kb on - strand, within BACOVA_04298at 190.981 kb on - strand, within BACOVA_04298at 191.009 kb on + strand, within BACOVA_04298at 191.020 kb on - strand, within BACOVA_04298at 191.052 kb on + strand, within BACOVA_04298at 191.310 kb on - strand, within BACOVA_04298at 191.335 kb on + strand, within BACOVA_04298at 191.335 kb on + strand, within BACOVA_04298at 191.381 kb on + strand, within BACOVA_04298at 191.388 kb on - strand, within BACOVA_04298at 191.404 kb on - strand, within BACOVA_04298at 191.434 kb on - strand, within BACOVA_04298at 191.510 kb on + strandat 191.514 kb on - strandat 191.540 kb on + strandat 191.575 kb on + strandat 191.576 kb on - strandat 191.583 kb on + strandat 191.609 kb on + strandat 191.609 kb on + strandat 191.610 kb on - strandat 191.610 kb on - strandat 191.610 kb on - strandat 191.611 kb on + strandat 191.611 kb on + strandat 191.612 kb on - strandat 191.612 kb on - strandat 191.612 kb on - strandat 191.630 kb on - strandat 191.643 kb on + strandat 191.644 kb on - strandat 191.644 kb on - strandat 191.644 kb on - strandat 191.645 kb on + strandat 191.646 kb on - strandat 191.648 kb on + strandat 191.653 kb on - strandat 191.673 kb on + strandat 191.680 kb on + strandat 191.680 kb on + strandat 191.681 kb on - strandat 191.697 kb on - strandat 191.712 kb on + strandat 191.712 kb on + strandat 191.713 kb on - strandat 191.713 kb on - strandat 191.713 kb on - strandat 191.752 kb on + strandat 191.777 kb on + strandat 191.845 kb on - strand, within BACOVA_04299at 191.889 kb on + strand, within BACOVA_04299at 191.890 kb on - strand, within BACOVA_04299at 191.890 kb on - strand, within BACOVA_04299at 191.891 kb on + strand, within BACOVA_04299at 191.891 kb on + strand, within BACOVA_04299at 191.891 kb on + strand, within BACOVA_04299at 191.892 kb on - strand, within BACOVA_04299at 191.892 kb on - strand, within BACOVA_04299at 191.919 kb on + strand, within BACOVA_04299at 192.001 kb on + strand, within BACOVA_04299at 192.018 kb on + strand, within BACOVA_04299at 192.059 kb on + strand, within BACOVA_04299at 192.076 kb on + strand, within BACOVA_04299at 192.077 kb on - strand, within BACOVA_04299at 192.083 kb on + strand, within BACOVA_04299at 192.134 kb on + strand, within BACOVA_04299at 192.150 kb on + strand, within BACOVA_04299at 192.151 kb on - strand, within BACOVA_04299at 192.159 kb on + strand, within BACOVA_04299at 192.169 kb on - strand, within BACOVA_04299at 192.170 kb on + strand, within BACOVA_04299at 192.170 kb on + strand, within BACOVA_04299at 192.309 kb on + strand, within BACOVA_04299at 192.377 kb on - strandat 192.394 kb on + strandat 192.425 kb on - strandat 192.437 kb on - strandat 192.465 kb on + strandat 192.466 kb on - strandat 192.492 kb on - strandat 192.502 kb on + strandat 192.504 kb on + strandat 192.512 kb on + strandat 192.526 kb on - strandat 192.526 kb on - strandat 192.526 kb on - strandat 192.528 kb on + strandat 192.528 kb on + strandat 192.528 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction pectate 2.5 mg/ml (C)
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189,627 + BACOVA_04297 0.24 -2.0
189,628 - BACOVA_04297 0.24 +1.2
189,630 + BACOVA_04297 0.24 +0.2
189,697 - BACOVA_04297 0.31 +0.5
189,717 + BACOVA_04297 0.32 +0.4
189,775 + BACOVA_04297 0.38 +1.3
189,776 - BACOVA_04297 0.38 -0.3
189,776 - BACOVA_04297 0.38 +0.4
189,776 - BACOVA_04297 0.38 -1.0
189,776 - BACOVA_04297 0.38 +0.2
189,776 - BACOVA_04297 0.38 +2.2
189,776 - BACOVA_04297 0.38 +1.4
189,776 - BACOVA_04297 0.38 +0.3
189,846 + BACOVA_04297 0.44 -0.1
189,847 - BACOVA_04297 0.44 +0.8
189,847 - BACOVA_04297 0.44 -0.4
189,871 - BACOVA_04297 0.46 +0.2
189,894 + BACOVA_04297 0.48 -0.4
189,895 - BACOVA_04297 0.48 +0.6
190,002 + BACOVA_04297 0.58 -2.1
190,002 + BACOVA_04297 0.58 -0.2
190,003 - BACOVA_04297 0.58 -0.3
190,013 + BACOVA_04297 0.59 -1.4
190,013 + BACOVA_04297 0.59 -0.4
190,014 - BACOVA_04297 0.59 +0.3
190,059 + BACOVA_04297 0.63 +0.2
190,090 + BACOVA_04297 0.66 -1.1
190,147 - BACOVA_04297 0.71 -0.6
190,149 + BACOVA_04297 0.71 +0.1
190,150 - BACOVA_04297 0.71 -0.2
190,150 - BACOVA_04297 0.71 +0.8
190,152 + BACOVA_04297 0.72 +0.5
190,153 - BACOVA_04297 0.72 +0.2
190,158 + BACOVA_04297 0.72 +0.7
190,158 + BACOVA_04297 0.72 +0.3
190,220 + BACOVA_04297 0.78 -0.6
190,220 + BACOVA_04297 0.78 +0.7
190,227 + BACOVA_04297 0.78 -0.4
190,227 + BACOVA_04297 0.78 +0.8
190,227 + BACOVA_04297 0.78 -0.1
190,227 + BACOVA_04297 0.78 -0.3
190,244 + BACOVA_04297 0.80 -0.4
190,252 - BACOVA_04297 0.81 -0.6
190,256 - BACOVA_04297 0.81 +1.1
190,278 - BACOVA_04297 0.83 +1.4
190,307 - BACOVA_04297 0.86 +0.9
190,317 - BACOVA_04297 0.87 +1.1
190,375 - +0.4
190,414 + -0.4
190,415 - -0.4
190,454 - -0.1
190,463 + -0.3
190,463 + +0.9
190,463 + +0.1
190,464 - -0.1
190,464 - -0.6
190,483 - -0.3
190,483 - +0.2
190,524 + +0.2
190,524 + +1.1
190,543 + +1.1
190,544 - -0.5
190,589 + -0.9
190,592 + +0.2
190,593 - -1.2
190,607 + +0.8
190,615 + +0.4
190,672 - +0.1
190,785 + BACOVA_04298 0.18 +0.1
190,786 - BACOVA_04298 0.18 -1.2
190,895 + BACOVA_04298 0.30 +0.5
190,898 + BACOVA_04298 0.30 +0.9
190,925 - BACOVA_04298 0.33 +1.2
190,981 - BACOVA_04298 0.39 +1.9
191,009 + BACOVA_04298 0.42 -1.3
191,020 - BACOVA_04298 0.43 -0.1
191,052 + BACOVA_04298 0.47 +0.6
191,310 - BACOVA_04298 0.74 -0.5
191,335 + BACOVA_04298 0.77 +0.9
191,335 + BACOVA_04298 0.77 -1.2
191,381 + BACOVA_04298 0.82 +0.1
191,388 - BACOVA_04298 0.82 +1.2
191,404 - BACOVA_04298 0.84 -1.1
191,434 - BACOVA_04298 0.87 -0.6
191,510 + -0.5
191,514 - -1.3
191,540 + -0.6
191,575 + +0.3
191,576 - -0.1
191,583 + +1.4
191,609 + +0.1
191,609 + +0.2
191,610 - +0.4
191,610 - +0.4
191,610 - +0.6
191,611 + -0.1
191,611 + -0.2
191,612 - +1.3
191,612 - -0.1
191,612 - -0.1
191,630 - -1.9
191,643 + -1.2
191,644 - -1.4
191,644 - -0.6
191,644 - +0.5
191,645 + -0.9
191,646 - -1.6
191,648 + +0.9
191,653 - +0.6
191,673 + -0.2
191,680 + -0.7
191,680 + +0.4
191,681 - +0.1
191,697 - +0.3
191,712 + +0.2
191,712 + -1.2
191,713 - +0.9
191,713 - +0.3
191,713 - +0.4
191,752 + -0.6
191,777 + -0.6
191,845 - BACOVA_04299 0.17 +0.6
191,889 + BACOVA_04299 0.23 -0.1
191,890 - BACOVA_04299 0.23 +0.9
191,890 - BACOVA_04299 0.23 +1.0
191,891 + BACOVA_04299 0.23 +0.9
191,891 + BACOVA_04299 0.23 +0.1
191,891 + BACOVA_04299 0.23 -1.8
191,892 - BACOVA_04299 0.23 +0.8
191,892 - BACOVA_04299 0.23 +0.4
191,919 + BACOVA_04299 0.27 -0.1
192,001 + BACOVA_04299 0.38 +0.2
192,018 + BACOVA_04299 0.41 +0.4
192,059 + BACOVA_04299 0.46 +0.9
192,076 + BACOVA_04299 0.49 -2.4
192,077 - BACOVA_04299 0.49 -0.2
192,083 + BACOVA_04299 0.50 -0.1
192,134 + BACOVA_04299 0.57 -0.1
192,150 + BACOVA_04299 0.59 -0.2
192,151 - BACOVA_04299 0.59 +0.1
192,159 + BACOVA_04299 0.60 -0.9
192,169 - BACOVA_04299 0.62 +0.1
192,170 + BACOVA_04299 0.62 +1.4
192,170 + BACOVA_04299 0.62 +0.3
192,309 + BACOVA_04299 0.81 -0.2
192,377 - +0.4
192,394 + -0.3
192,425 - +0.2
192,437 - +1.4
192,465 + +1.5
192,466 - -1.0
192,492 - +0.4
192,502 + +0.1
192,504 + -1.1
192,512 + -0.1
192,526 - -1.1
192,526 - +1.9
192,526 - +0.1
192,528 + -1.4
192,528 + -0.1
192,528 + -1.1

Or see this region's nucleotide sequence