Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_05348

Experiment: Locust bean gum 2.5 mg/ml (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_05347 and BACOVA_05348 are separated by 11 nucleotidesBACOVA_05348 and BACOVA_05349 are separated by 36 nucleotides BACOVA_05347: BACOVA_05347 - hypothetical protein, at 832,269 to 835,553 _05347 BACOVA_05348: BACOVA_05348 - RND transporter, HAE1/HME family, permease protein, at 835,565 to 838,615 _05348 BACOVA_05349: BACOVA_05349 - efflux transporter, RND family, MFP subunit, at 838,652 to 839,731 _05349 Position (kb) 835 836 837 838 839Strain fitness (log2 ratio) -2 -1 0 1 2at 834.588 kb on + strand, within BACOVA_05347at 834.632 kb on + strand, within BACOVA_05347at 834.632 kb on + strand, within BACOVA_05347at 834.657 kb on - strand, within BACOVA_05347at 834.661 kb on - strand, within BACOVA_05347at 834.719 kb on - strand, within BACOVA_05347at 834.728 kb on + strand, within BACOVA_05347at 834.827 kb on + strand, within BACOVA_05347at 834.827 kb on + strand, within BACOVA_05347at 834.828 kb on - strand, within BACOVA_05347at 834.836 kb on + strand, within BACOVA_05347at 834.871 kb on - strand, within BACOVA_05347at 834.915 kb on + strand, within BACOVA_05347at 834.915 kb on + strand, within BACOVA_05347at 834.915 kb on + strand, within BACOVA_05347at 834.916 kb on - strand, within BACOVA_05347at 834.916 kb on - strand, within BACOVA_05347at 834.918 kb on - strand, within BACOVA_05347at 834.928 kb on - strand, within BACOVA_05347at 834.935 kb on - strand, within BACOVA_05347at 834.938 kb on + strand, within BACOVA_05347at 834.938 kb on + strand, within BACOVA_05347at 834.939 kb on - strand, within BACOVA_05347at 834.943 kb on - strand, within BACOVA_05347at 834.958 kb on + strand, within BACOVA_05347at 834.959 kb on - strand, within BACOVA_05347at 835.054 kb on + strand, within BACOVA_05347at 835.055 kb on - strand, within BACOVA_05347at 835.055 kb on - strand, within BACOVA_05347at 835.094 kb on + strand, within BACOVA_05347at 835.095 kb on - strand, within BACOVA_05347at 835.095 kb on - strand, within BACOVA_05347at 835.096 kb on + strand, within BACOVA_05347at 835.180 kb on - strand, within BACOVA_05347at 835.212 kb on + strand, within BACOVA_05347at 835.213 kb on - strand, within BACOVA_05347at 835.233 kb on + strandat 835.233 kb on + strandat 835.234 kb on - strandat 835.289 kb on + strandat 835.340 kb on + strandat 835.401 kb on + strandat 835.431 kb on - strandat 835.432 kb on + strandat 835.479 kb on + strandat 835.480 kb on - strandat 835.480 kb on - strandat 835.488 kb on - strandat 835.488 kb on - strandat 835.491 kb on + strandat 835.536 kb on + strandat 835.541 kb on + strandat 835.542 kb on - strandat 835.542 kb on - strandat 835.542 kb on - strandat 835.586 kb on - strandat 835.590 kb on + strandat 835.601 kb on + strandat 835.603 kb on + strandat 835.604 kb on - strandat 835.618 kb on + strandat 835.618 kb on + strandat 835.715 kb on + strandat 835.715 kb on + strandat 835.718 kb on + strandat 835.719 kb on - strandat 835.719 kb on - strandat 835.738 kb on + strandat 835.784 kb on + strandat 835.785 kb on - strandat 835.827 kb on - strandat 835.853 kb on - strandat 835.853 kb on - strandat 835.853 kb on - strandat 835.891 kb on + strand, within BACOVA_05348at 836.041 kb on + strand, within BACOVA_05348at 836.188 kb on - strand, within BACOVA_05348at 836.275 kb on - strand, within BACOVA_05348at 836.278 kb on + strand, within BACOVA_05348at 836.349 kb on + strand, within BACOVA_05348at 836.373 kb on - strand, within BACOVA_05348at 836.426 kb on - strand, within BACOVA_05348at 836.428 kb on + strand, within BACOVA_05348at 836.428 kb on + strand, within BACOVA_05348at 836.428 kb on + strand, within BACOVA_05348at 836.429 kb on - strand, within BACOVA_05348at 836.433 kb on + strand, within BACOVA_05348at 836.435 kb on + strand, within BACOVA_05348at 836.462 kb on - strand, within BACOVA_05348at 836.462 kb on - strand, within BACOVA_05348at 836.462 kb on - strand, within BACOVA_05348at 836.463 kb on + strand, within BACOVA_05348at 836.471 kb on - strand, within BACOVA_05348at 836.532 kb on - strand, within BACOVA_05348at 836.535 kb on - strand, within BACOVA_05348at 836.653 kb on + strand, within BACOVA_05348at 836.683 kb on + strand, within BACOVA_05348at 836.684 kb on - strand, within BACOVA_05348at 836.685 kb on + strand, within BACOVA_05348at 836.685 kb on + strand, within BACOVA_05348at 836.686 kb on - strand, within BACOVA_05348at 836.742 kb on + strand, within BACOVA_05348at 836.776 kb on + strand, within BACOVA_05348at 836.859 kb on - strand, within BACOVA_05348at 836.886 kb on - strand, within BACOVA_05348at 836.887 kb on + strand, within BACOVA_05348at 836.888 kb on - strand, within BACOVA_05348at 836.893 kb on + strand, within BACOVA_05348at 836.914 kb on + strand, within BACOVA_05348at 836.914 kb on + strand, within BACOVA_05348at 836.915 kb on - strand, within BACOVA_05348at 836.932 kb on + strand, within BACOVA_05348at 836.973 kb on + strand, within BACOVA_05348at 836.973 kb on + strand, within BACOVA_05348at 836.974 kb on - strand, within BACOVA_05348at 836.974 kb on - strand, within BACOVA_05348at 836.974 kb on - strand, within BACOVA_05348at 836.993 kb on + strand, within BACOVA_05348at 837.005 kb on - strand, within BACOVA_05348at 837.063 kb on + strand, within BACOVA_05348at 837.105 kb on + strand, within BACOVA_05348at 837.121 kb on + strand, within BACOVA_05348at 837.133 kb on - strand, within BACOVA_05348at 837.185 kb on + strand, within BACOVA_05348at 837.210 kb on + strand, within BACOVA_05348at 837.252 kb on - strand, within BACOVA_05348at 837.280 kb on + strand, within BACOVA_05348at 837.281 kb on - strand, within BACOVA_05348at 837.281 kb on - strand, within BACOVA_05348at 837.284 kb on + strand, within BACOVA_05348at 837.284 kb on + strand, within BACOVA_05348at 837.296 kb on - strand, within BACOVA_05348at 837.363 kb on - strand, within BACOVA_05348at 837.364 kb on + strand, within BACOVA_05348at 837.365 kb on - strand, within BACOVA_05348at 837.365 kb on - strand, within BACOVA_05348at 837.367 kb on + strand, within BACOVA_05348at 837.433 kb on - strand, within BACOVA_05348at 837.475 kb on + strand, within BACOVA_05348at 837.551 kb on + strand, within BACOVA_05348at 837.552 kb on - strand, within BACOVA_05348at 837.552 kb on - strand, within BACOVA_05348at 837.607 kb on - strand, within BACOVA_05348at 837.607 kb on - strand, within BACOVA_05348at 837.691 kb on + strand, within BACOVA_05348at 837.733 kb on + strand, within BACOVA_05348at 837.766 kb on + strand, within BACOVA_05348at 837.766 kb on + strand, within BACOVA_05348at 837.767 kb on - strand, within BACOVA_05348at 837.767 kb on - strand, within BACOVA_05348at 837.771 kb on - strand, within BACOVA_05348at 837.812 kb on + strand, within BACOVA_05348at 837.812 kb on + strand, within BACOVA_05348at 837.828 kb on + strand, within BACOVA_05348at 837.832 kb on + strand, within BACOVA_05348at 837.852 kb on + strand, within BACOVA_05348at 837.852 kb on + strand, within BACOVA_05348at 837.855 kb on - strand, within BACOVA_05348at 837.856 kb on + strand, within BACOVA_05348at 837.856 kb on + strand, within BACOVA_05348at 837.959 kb on - strand, within BACOVA_05348at 837.985 kb on + strand, within BACOVA_05348at 837.997 kb on + strand, within BACOVA_05348at 837.997 kb on + strand, within BACOVA_05348at 837.998 kb on - strand, within BACOVA_05348at 838.015 kb on - strand, within BACOVA_05348at 838.024 kb on + strand, within BACOVA_05348at 838.025 kb on - strand, within BACOVA_05348at 838.025 kb on - strand, within BACOVA_05348at 838.032 kb on - strand, within BACOVA_05348at 838.198 kb on + strand, within BACOVA_05348at 838.203 kb on + strand, within BACOVA_05348at 838.243 kb on + strand, within BACOVA_05348at 838.306 kb on + strand, within BACOVA_05348at 838.316 kb on - strandat 838.320 kb on - strandat 838.320 kb on - strandat 838.322 kb on - strandat 838.322 kb on - strandat 838.322 kb on - strandat 838.348 kb on - strandat 838.351 kb on + strandat 838.352 kb on - strandat 838.359 kb on - strandat 838.441 kb on + strandat 838.441 kb on + strandat 838.441 kb on + strandat 838.441 kb on + strandat 838.441 kb on + strandat 838.442 kb on - strandat 838.445 kb on + strandat 838.445 kb on + strandat 838.497 kb on - strandat 838.514 kb on - strandat 838.587 kb on - strandat 838.601 kb on + strandat 838.601 kb on + strandat 838.602 kb on - strandat 838.700 kb on + strandat 838.700 kb on + strandat 838.701 kb on - strandat 838.771 kb on + strand, within BACOVA_05349at 838.774 kb on + strand, within BACOVA_05349at 838.774 kb on + strand, within BACOVA_05349at 838.781 kb on - strand, within BACOVA_05349at 838.781 kb on - strand, within BACOVA_05349at 838.819 kb on + strand, within BACOVA_05349at 838.822 kb on - strand, within BACOVA_05349at 838.932 kb on - strand, within BACOVA_05349at 838.932 kb on - strand, within BACOVA_05349at 838.940 kb on - strand, within BACOVA_05349at 838.943 kb on - strand, within BACOVA_05349at 838.945 kb on - strand, within BACOVA_05349at 838.948 kb on + strand, within BACOVA_05349at 838.949 kb on - strand, within BACOVA_05349at 838.952 kb on + strand, within BACOVA_05349at 838.953 kb on - strand, within BACOVA_05349at 839.096 kb on + strand, within BACOVA_05349at 839.099 kb on + strand, within BACOVA_05349at 839.099 kb on + strand, within BACOVA_05349at 839.144 kb on + strand, within BACOVA_05349at 839.166 kb on + strand, within BACOVA_05349at 839.167 kb on - strand, within BACOVA_05349at 839.168 kb on + strand, within BACOVA_05349at 839.169 kb on - strand, within BACOVA_05349at 839.169 kb on - strand, within BACOVA_05349at 839.217 kb on + strand, within BACOVA_05349at 839.224 kb on + strand, within BACOVA_05349at 839.225 kb on - strand, within BACOVA_05349at 839.250 kb on - strand, within BACOVA_05349at 839.290 kb on + strand, within BACOVA_05349at 839.353 kb on + strand, within BACOVA_05349at 839.353 kb on + strand, within BACOVA_05349at 839.461 kb on + strand, within BACOVA_05349at 839.462 kb on - strand, within BACOVA_05349at 839.475 kb on - strand, within BACOVA_05349at 839.475 kb on - strand, within BACOVA_05349at 839.476 kb on + strand, within BACOVA_05349at 839.491 kb on + strand, within BACOVA_05349at 839.514 kb on - strand, within BACOVA_05349at 839.548 kb on + strand, within BACOVA_05349at 839.548 kb on + strand, within BACOVA_05349at 839.553 kb on - strand, within BACOVA_05349at 839.585 kb on + strand, within BACOVA_05349at 839.586 kb on - strand, within BACOVA_05349at 839.602 kb on + strand, within BACOVA_05349at 839.603 kb on - strand, within BACOVA_05349

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Locust bean gum 2.5 mg/ml (C)
remove
834,588 + BACOVA_05347 0.71 -0.0
834,632 + BACOVA_05347 0.72 +1.3
834,632 + BACOVA_05347 0.72 -0.0
834,657 - BACOVA_05347 0.73 +0.4
834,661 - BACOVA_05347 0.73 +0.1
834,719 - BACOVA_05347 0.75 +1.7
834,728 + BACOVA_05347 0.75 -0.6
834,827 + BACOVA_05347 0.78 +0.7
834,827 + BACOVA_05347 0.78 -0.6
834,828 - BACOVA_05347 0.78 +0.6
834,836 + BACOVA_05347 0.78 +0.1
834,871 - BACOVA_05347 0.79 -0.6
834,915 + BACOVA_05347 0.81 +1.0
834,915 + BACOVA_05347 0.81 -1.3
834,915 + BACOVA_05347 0.81 +0.1
834,916 - BACOVA_05347 0.81 +1.0
834,916 - BACOVA_05347 0.81 +1.1
834,918 - BACOVA_05347 0.81 -0.0
834,928 - BACOVA_05347 0.81 +1.0
834,935 - BACOVA_05347 0.81 -0.7
834,938 + BACOVA_05347 0.81 -0.8
834,938 + BACOVA_05347 0.81 +0.8
834,939 - BACOVA_05347 0.81 -0.3
834,943 - BACOVA_05347 0.81 +0.5
834,958 + BACOVA_05347 0.82 -0.2
834,959 - BACOVA_05347 0.82 +0.3
835,054 + BACOVA_05347 0.85 -0.7
835,055 - BACOVA_05347 0.85 +2.0
835,055 - BACOVA_05347 0.85 +0.1
835,094 + BACOVA_05347 0.86 +0.2
835,095 - BACOVA_05347 0.86 -1.0
835,095 - BACOVA_05347 0.86 +1.7
835,096 + BACOVA_05347 0.86 +0.4
835,180 - BACOVA_05347 0.89 +2.6
835,212 + BACOVA_05347 0.90 -1.2
835,213 - BACOVA_05347 0.90 +2.0
835,233 + +1.0
835,233 + -0.0
835,234 - +1.4
835,289 + +0.2
835,340 + -1.0
835,401 + +0.2
835,431 - -2.0
835,432 + -0.5
835,479 + +0.1
835,480 - +1.2
835,480 - +0.5
835,488 - +0.3
835,488 - -0.0
835,491 + -2.1
835,536 + +0.4
835,541 + -0.8
835,542 - -0.6
835,542 - -0.9
835,542 - -0.2
835,586 - -0.0
835,590 + -0.6
835,601 + -0.7
835,603 + -0.0
835,604 - +1.0
835,618 + -0.6
835,618 + +0.2
835,715 + -0.6
835,715 + +0.7
835,718 + +0.5
835,719 - +1.0
835,719 - -1.3
835,738 + +0.5
835,784 + -1.2
835,785 - +1.0
835,827 - -0.3
835,853 - +0.5
835,853 - +1.1
835,853 - +0.3
835,891 + BACOVA_05348 0.11 +1.2
836,041 + BACOVA_05348 0.16 +0.5
836,188 - BACOVA_05348 0.20 -1.2
836,275 - BACOVA_05348 0.23 +0.5
836,278 + BACOVA_05348 0.23 -0.0
836,349 + BACOVA_05348 0.26 -1.3
836,373 - BACOVA_05348 0.26 -1.4
836,426 - BACOVA_05348 0.28 +0.1
836,428 + BACOVA_05348 0.28 -2.5
836,428 + BACOVA_05348 0.28 +1.5
836,428 + BACOVA_05348 0.28 -0.6
836,429 - BACOVA_05348 0.28 +0.3
836,433 + BACOVA_05348 0.28 +0.5
836,435 + BACOVA_05348 0.29 -0.3
836,462 - BACOVA_05348 0.29 -0.8
836,462 - BACOVA_05348 0.29 +0.1
836,462 - BACOVA_05348 0.29 -0.1
836,463 + BACOVA_05348 0.29 +1.0
836,471 - BACOVA_05348 0.30 -0.6
836,532 - BACOVA_05348 0.32 +0.4
836,535 - BACOVA_05348 0.32 +1.0
836,653 + BACOVA_05348 0.36 -0.4
836,683 + BACOVA_05348 0.37 -0.2
836,684 - BACOVA_05348 0.37 -0.7
836,685 + BACOVA_05348 0.37 +0.6
836,685 + BACOVA_05348 0.37 -0.9
836,686 - BACOVA_05348 0.37 -0.5
836,742 + BACOVA_05348 0.39 +0.7
836,776 + BACOVA_05348 0.40 +1.0
836,859 - BACOVA_05348 0.42 +0.1
836,886 - BACOVA_05348 0.43 +0.4
836,887 + BACOVA_05348 0.43 +2.0
836,888 - BACOVA_05348 0.43 +0.5
836,893 + BACOVA_05348 0.44 -0.0
836,914 + BACOVA_05348 0.44 +0.9
836,914 + BACOVA_05348 0.44 +1.0
836,915 - BACOVA_05348 0.44 -0.0
836,932 + BACOVA_05348 0.45 +0.1
836,973 + BACOVA_05348 0.46 +1.9
836,973 + BACOVA_05348 0.46 -0.3
836,974 - BACOVA_05348 0.46 -1.3
836,974 - BACOVA_05348 0.46 -1.3
836,974 - BACOVA_05348 0.46 +0.7
836,993 + BACOVA_05348 0.47 +2.0
837,005 - BACOVA_05348 0.47 +0.6
837,063 + BACOVA_05348 0.49 -0.0
837,105 + BACOVA_05348 0.50 +1.3
837,121 + BACOVA_05348 0.51 +0.4
837,133 - BACOVA_05348 0.51 +0.2
837,185 + BACOVA_05348 0.53 -0.8
837,210 + BACOVA_05348 0.54 -0.4
837,252 - BACOVA_05348 0.55 +1.4
837,280 + BACOVA_05348 0.56 -0.7
837,281 - BACOVA_05348 0.56 -0.2
837,281 - BACOVA_05348 0.56 -0.3
837,284 + BACOVA_05348 0.56 +1.0
837,284 + BACOVA_05348 0.56 -0.9
837,296 - BACOVA_05348 0.57 -0.4
837,363 - BACOVA_05348 0.59 +0.3
837,364 + BACOVA_05348 0.59 +0.9
837,365 - BACOVA_05348 0.59 +1.2
837,365 - BACOVA_05348 0.59 +2.6
837,367 + BACOVA_05348 0.59 +1.4
837,433 - BACOVA_05348 0.61 -0.1
837,475 + BACOVA_05348 0.63 +2.6
837,551 + BACOVA_05348 0.65 +1.0
837,552 - BACOVA_05348 0.65 +1.5
837,552 - BACOVA_05348 0.65 +1.3
837,607 - BACOVA_05348 0.67 +0.2
837,607 - BACOVA_05348 0.67 -0.6
837,691 + BACOVA_05348 0.70 +1.6
837,733 + BACOVA_05348 0.71 -0.3
837,766 + BACOVA_05348 0.72 +0.8
837,766 + BACOVA_05348 0.72 +0.4
837,767 - BACOVA_05348 0.72 -1.8
837,767 - BACOVA_05348 0.72 -0.6
837,771 - BACOVA_05348 0.72 +0.7
837,812 + BACOVA_05348 0.74 -0.5
837,812 + BACOVA_05348 0.74 +0.6
837,828 + BACOVA_05348 0.74 +0.2
837,832 + BACOVA_05348 0.74 -0.8
837,852 + BACOVA_05348 0.75 +2.0
837,852 + BACOVA_05348 0.75 +0.6
837,855 - BACOVA_05348 0.75 -0.0
837,856 + BACOVA_05348 0.75 -0.5
837,856 + BACOVA_05348 0.75 +0.3
837,959 - BACOVA_05348 0.78 -1.0
837,985 + BACOVA_05348 0.79 +0.4
837,997 + BACOVA_05348 0.80 +1.2
837,997 + BACOVA_05348 0.80 +0.9
837,998 - BACOVA_05348 0.80 -1.6
838,015 - BACOVA_05348 0.80 -0.9
838,024 + BACOVA_05348 0.81 +0.8
838,025 - BACOVA_05348 0.81 +0.2
838,025 - BACOVA_05348 0.81 +0.1
838,032 - BACOVA_05348 0.81 +2.0
838,198 + BACOVA_05348 0.86 -0.0
838,203 + BACOVA_05348 0.86 +1.1
838,243 + BACOVA_05348 0.88 +0.1
838,306 + BACOVA_05348 0.90 -0.2
838,316 - +1.4
838,320 - +0.4
838,320 - -1.5
838,322 - +0.2
838,322 - -1.0
838,322 - +1.8
838,348 - +0.6
838,351 + +0.7
838,352 - -0.0
838,359 - +0.2
838,441 + -1.4
838,441 + +1.6
838,441 + +1.0
838,441 + +0.8
838,441 + +0.4
838,442 - -0.6
838,445 + -0.0
838,445 + +0.1
838,497 - +1.2
838,514 - +0.0
838,587 - +0.7
838,601 + -0.0
838,601 + -0.7
838,602 - +0.3
838,700 + +1.4
838,700 + -0.6
838,701 - +1.0
838,771 + BACOVA_05349 0.11 +0.7
838,774 + BACOVA_05349 0.11 -0.0
838,774 + BACOVA_05349 0.11 +0.4
838,781 - BACOVA_05349 0.12 +0.8
838,781 - BACOVA_05349 0.12 +2.0
838,819 + BACOVA_05349 0.15 +0.1
838,822 - BACOVA_05349 0.16 +0.1
838,932 - BACOVA_05349 0.26 -1.6
838,932 - BACOVA_05349 0.26 -1.3
838,940 - BACOVA_05349 0.27 -0.0
838,943 - BACOVA_05349 0.27 -1.0
838,945 - BACOVA_05349 0.27 -0.5
838,948 + BACOVA_05349 0.27 +1.8
838,949 - BACOVA_05349 0.28 -1.0
838,952 + BACOVA_05349 0.28 -1.6
838,953 - BACOVA_05349 0.28 -1.8
839,096 + BACOVA_05349 0.41 +0.1
839,099 + BACOVA_05349 0.41 -0.2
839,099 + BACOVA_05349 0.41 -0.4
839,144 + BACOVA_05349 0.46 +0.1
839,166 + BACOVA_05349 0.48 +1.6
839,167 - BACOVA_05349 0.48 -0.6
839,168 + BACOVA_05349 0.48 -0.3
839,169 - BACOVA_05349 0.48 -0.3
839,169 - BACOVA_05349 0.48 +0.8
839,217 + BACOVA_05349 0.52 +0.0
839,224 + BACOVA_05349 0.53 -0.1
839,225 - BACOVA_05349 0.53 -0.8
839,250 - BACOVA_05349 0.55 +1.0
839,290 + BACOVA_05349 0.59 +0.6
839,353 + BACOVA_05349 0.65 +1.5
839,353 + BACOVA_05349 0.65 -0.3
839,461 + BACOVA_05349 0.75 +0.8
839,462 - BACOVA_05349 0.75 -2.7
839,475 - BACOVA_05349 0.76 +0.6
839,475 - BACOVA_05349 0.76 -0.6
839,476 + BACOVA_05349 0.76 +0.4
839,491 + BACOVA_05349 0.78 -0.1
839,514 - BACOVA_05349 0.80 -2.3
839,548 + BACOVA_05349 0.83 +2.0
839,548 + BACOVA_05349 0.83 -1.0
839,553 - BACOVA_05349 0.83 -0.6
839,585 + BACOVA_05349 0.86 +0.1
839,586 - BACOVA_05349 0.86 +0.1
839,602 + BACOVA_05349 0.88 +0.8
839,603 - BACOVA_05349 0.88 -1.0

Or see this region's nucleotide sequence