Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04438

Experiment: Locust bean gum 2.5 mg/ml (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_04436 and BACOVA_04437 are separated by 433 nucleotidesBACOVA_04437 and BACOVA_04438 are separated by 80 nucleotidesBACOVA_04438 and BACOVA_04439 are separated by 193 nucleotidesBACOVA_04439 and BACOVA_04440 are separated by 218 nucleotidesBACOVA_04440 and BACOVA_04441 are separated by 29 nucleotides BACOVA_04436: BACOVA_04436 - fructose-1,6-bisphosphate aldolase, class II, at 352,468 to 353,472 _04436 BACOVA_04437: BACOVA_04437 - ribosomal protein L31, at 353,906 to 354,160 _04437 BACOVA_04438: BACOVA_04438 - hypothetical protein, at 354,241 to 355,455 _04438 BACOVA_04439: BACOVA_04439 - hypothetical protein, at 355,649 to 356,056 _04439 BACOVA_04440: BACOVA_04440 - hypothetical protein, at 356,275 to 356,379 _04440 BACOVA_04441: BACOVA_04441 - hypothetical protein, at 356,409 to 356,522 _04441 Position (kb) 354 355 356Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 353.509 kb on - strandat 353.509 kb on - strandat 353.519 kb on - strandat 353.519 kb on - strandat 353.617 kb on + strandat 353.618 kb on - strandat 353.653 kb on - strandat 353.688 kb on - strandat 353.690 kb on - strandat 353.690 kb on - strandat 353.701 kb on + strandat 353.702 kb on - strandat 353.702 kb on - strandat 353.703 kb on + strandat 353.708 kb on + strandat 353.709 kb on - strandat 353.712 kb on + strandat 353.712 kb on + strandat 353.752 kb on + strandat 353.854 kb on + strandat 354.158 kb on + strandat 354.227 kb on + strandat 354.228 kb on - strandat 354.228 kb on - strandat 354.325 kb on + strandat 354.325 kb on + strandat 354.325 kb on + strandat 354.325 kb on + strandat 354.329 kb on + strandat 354.329 kb on + strandat 354.330 kb on - strandat 354.330 kb on - strandat 354.330 kb on - strandat 354.404 kb on + strand, within BACOVA_04438at 354.404 kb on + strand, within BACOVA_04438at 354.405 kb on - strand, within BACOVA_04438at 354.409 kb on + strand, within BACOVA_04438at 354.419 kb on + strand, within BACOVA_04438at 354.479 kb on - strand, within BACOVA_04438at 354.482 kb on + strand, within BACOVA_04438at 354.483 kb on - strand, within BACOVA_04438at 354.483 kb on - strand, within BACOVA_04438at 354.491 kb on + strand, within BACOVA_04438at 354.534 kb on + strand, within BACOVA_04438at 354.637 kb on - strand, within BACOVA_04438at 354.638 kb on + strand, within BACOVA_04438at 354.651 kb on + strand, within BACOVA_04438at 354.663 kb on + strand, within BACOVA_04438at 354.664 kb on - strand, within BACOVA_04438at 354.689 kb on + strand, within BACOVA_04438at 354.690 kb on - strand, within BACOVA_04438at 354.693 kb on + strand, within BACOVA_04438at 354.694 kb on - strand, within BACOVA_04438at 354.694 kb on - strand, within BACOVA_04438at 354.695 kb on + strand, within BACOVA_04438at 354.696 kb on - strand, within BACOVA_04438at 354.696 kb on - strand, within BACOVA_04438at 354.696 kb on - strand, within BACOVA_04438at 354.696 kb on - strand, within BACOVA_04438at 354.709 kb on - strand, within BACOVA_04438at 354.738 kb on - strand, within BACOVA_04438at 354.738 kb on - strand, within BACOVA_04438at 354.765 kb on + strand, within BACOVA_04438at 354.772 kb on + strand, within BACOVA_04438at 354.773 kb on - strand, within BACOVA_04438at 354.773 kb on - strand, within BACOVA_04438at 354.774 kb on + strand, within BACOVA_04438at 354.775 kb on - strand, within BACOVA_04438at 354.866 kb on + strand, within BACOVA_04438at 354.867 kb on - strand, within BACOVA_04438at 354.885 kb on + strand, within BACOVA_04438at 354.886 kb on - strand, within BACOVA_04438at 354.887 kb on + strand, within BACOVA_04438at 354.915 kb on + strand, within BACOVA_04438at 354.915 kb on + strand, within BACOVA_04438at 354.916 kb on - strand, within BACOVA_04438at 354.919 kb on + strand, within BACOVA_04438at 354.919 kb on + strand, within BACOVA_04438at 354.919 kb on + strand, within BACOVA_04438at 354.947 kb on + strand, within BACOVA_04438at 354.947 kb on + strand, within BACOVA_04438at 355.014 kb on - strand, within BACOVA_04438at 355.014 kb on - strand, within BACOVA_04438at 355.053 kb on - strand, within BACOVA_04438at 355.092 kb on + strand, within BACOVA_04438at 355.115 kb on + strand, within BACOVA_04438at 355.115 kb on + strand, within BACOVA_04438at 355.116 kb on - strand, within BACOVA_04438at 355.120 kb on - strand, within BACOVA_04438at 355.197 kb on + strand, within BACOVA_04438at 355.200 kb on - strand, within BACOVA_04438at 355.200 kb on - strand, within BACOVA_04438at 355.200 kb on - strand, within BACOVA_04438at 355.203 kb on - strand, within BACOVA_04438at 355.236 kb on - strand, within BACOVA_04438at 355.236 kb on - strand, within BACOVA_04438at 355.236 kb on - strand, within BACOVA_04438at 355.241 kb on + strand, within BACOVA_04438at 355.241 kb on + strand, within BACOVA_04438at 355.241 kb on + strand, within BACOVA_04438at 355.242 kb on - strand, within BACOVA_04438at 355.303 kb on - strand, within BACOVA_04438at 355.435 kb on - strandat 355.436 kb on + strandat 355.436 kb on + strandat 355.436 kb on + strandat 355.613 kb on + strandat 355.694 kb on - strand, within BACOVA_04439at 355.723 kb on + strand, within BACOVA_04439at 355.874 kb on + strand, within BACOVA_04439at 355.874 kb on + strand, within BACOVA_04439at 355.874 kb on + strand, within BACOVA_04439at 355.874 kb on + strand, within BACOVA_04439at 355.874 kb on + strand, within BACOVA_04439at 355.874 kb on + strand, within BACOVA_04439at 355.874 kb on + strand, within BACOVA_04439at 355.875 kb on - strand, within BACOVA_04439at 355.875 kb on - strand, within BACOVA_04439at 355.875 kb on - strand, within BACOVA_04439at 355.875 kb on - strand, within BACOVA_04439at 355.875 kb on - strand, within BACOVA_04439at 355.890 kb on - strand, within BACOVA_04439at 355.937 kb on + strand, within BACOVA_04439at 355.937 kb on + strand, within BACOVA_04439at 355.938 kb on - strand, within BACOVA_04439at 355.938 kb on - strand, within BACOVA_04439at 355.978 kb on - strand, within BACOVA_04439at 355.981 kb on + strand, within BACOVA_04439at 355.981 kb on + strand, within BACOVA_04439at 355.981 kb on + strand, within BACOVA_04439at 355.981 kb on + strand, within BACOVA_04439at 356.020 kb on + strandat 356.020 kb on + strandat 356.081 kb on + strandat 356.082 kb on - strandat 356.182 kb on - strandat 356.185 kb on + strandat 356.196 kb on + strandat 356.197 kb on - strandat 356.199 kb on + strandat 356.231 kb on - strandat 356.264 kb on - strandat 356.276 kb on + strandat 356.284 kb on - strandat 356.284 kb on - strandat 356.284 kb on - strandat 356.298 kb on + strand, within BACOVA_04440at 356.304 kb on - strand, within BACOVA_04440at 356.304 kb on - strand, within BACOVA_04440at 356.336 kb on - strand, within BACOVA_04440at 356.354 kb on - strand, within BACOVA_04440at 356.425 kb on + strand, within BACOVA_04441at 356.434 kb on + strand, within BACOVA_04441at 356.434 kb on + strand, within BACOVA_04441at 356.435 kb on - strand, within BACOVA_04441

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Locust bean gum 2.5 mg/ml (C)
remove
353,509 - -1.0
353,509 - -0.7
353,519 - +0.7
353,519 - +0.1
353,617 + -1.2
353,618 - +0.4
353,653 - +0.5
353,688 - -0.3
353,690 - -0.2
353,690 - -0.4
353,701 + -1.3
353,702 - +1.4
353,702 - -0.1
353,703 + +1.0
353,708 + -0.2
353,709 - +0.2
353,712 + +1.0
353,712 + -0.5
353,752 + +0.7
353,854 + -1.5
354,158 + -0.5
354,227 + -1.1
354,228 - +0.8
354,228 - -0.8
354,325 + -1.5
354,325 + +0.8
354,325 + +0.1
354,325 + -0.0
354,329 + -0.0
354,329 + +1.0
354,330 - -1.3
354,330 - +1.6
354,330 - +0.1
354,404 + BACOVA_04438 0.13 +0.7
354,404 + BACOVA_04438 0.13 -0.5
354,405 - BACOVA_04438 0.13 +1.7
354,409 + BACOVA_04438 0.14 +0.8
354,419 + BACOVA_04438 0.15 +1.5
354,479 - BACOVA_04438 0.20 +0.3
354,482 + BACOVA_04438 0.20 -0.9
354,483 - BACOVA_04438 0.20 +1.0
354,483 - BACOVA_04438 0.20 -0.0
354,491 + BACOVA_04438 0.21 -0.3
354,534 + BACOVA_04438 0.24 -0.6
354,637 - BACOVA_04438 0.33 +0.6
354,638 + BACOVA_04438 0.33 +0.3
354,651 + BACOVA_04438 0.34 -0.1
354,663 + BACOVA_04438 0.35 -1.2
354,664 - BACOVA_04438 0.35 +0.6
354,689 + BACOVA_04438 0.37 +0.5
354,690 - BACOVA_04438 0.37 -0.1
354,693 + BACOVA_04438 0.37 +0.4
354,694 - BACOVA_04438 0.37 -0.2
354,694 - BACOVA_04438 0.37 -0.7
354,695 + BACOVA_04438 0.37 +1.3
354,696 - BACOVA_04438 0.37 -0.3
354,696 - BACOVA_04438 0.37 +0.6
354,696 - BACOVA_04438 0.37 -0.8
354,696 - BACOVA_04438 0.37 -2.8
354,709 - BACOVA_04438 0.39 -0.6
354,738 - BACOVA_04438 0.41 +0.4
354,738 - BACOVA_04438 0.41 +1.0
354,765 + BACOVA_04438 0.43 +0.6
354,772 + BACOVA_04438 0.44 +0.1
354,773 - BACOVA_04438 0.44 -1.0
354,773 - BACOVA_04438 0.44 +0.8
354,774 + BACOVA_04438 0.44 -1.0
354,775 - BACOVA_04438 0.44 +0.5
354,866 + BACOVA_04438 0.51 -0.0
354,867 - BACOVA_04438 0.52 -0.6
354,885 + BACOVA_04438 0.53 -1.3
354,886 - BACOVA_04438 0.53 +0.1
354,887 + BACOVA_04438 0.53 -1.0
354,915 + BACOVA_04438 0.55 +0.1
354,915 + BACOVA_04438 0.55 -1.3
354,916 - BACOVA_04438 0.56 +0.1
354,919 + BACOVA_04438 0.56 +1.6
354,919 + BACOVA_04438 0.56 -0.4
354,919 + BACOVA_04438 0.56 +1.7
354,947 + BACOVA_04438 0.58 -0.7
354,947 + BACOVA_04438 0.58 +0.4
355,014 - BACOVA_04438 0.64 +1.6
355,014 - BACOVA_04438 0.64 -1.5
355,053 - BACOVA_04438 0.67 +0.1
355,092 + BACOVA_04438 0.70 -1.0
355,115 + BACOVA_04438 0.72 -0.8
355,115 + BACOVA_04438 0.72 -1.0
355,116 - BACOVA_04438 0.72 +0.6
355,120 - BACOVA_04438 0.72 +1.0
355,197 + BACOVA_04438 0.79 -0.5
355,200 - BACOVA_04438 0.79 -0.5
355,200 - BACOVA_04438 0.79 +1.0
355,200 - BACOVA_04438 0.79 -0.3
355,203 - BACOVA_04438 0.79 +0.2
355,236 - BACOVA_04438 0.82 +0.1
355,236 - BACOVA_04438 0.82 -0.1
355,236 - BACOVA_04438 0.82 -0.0
355,241 + BACOVA_04438 0.82 -0.6
355,241 + BACOVA_04438 0.82 -0.6
355,241 + BACOVA_04438 0.82 +0.3
355,242 - BACOVA_04438 0.82 +1.0
355,303 - BACOVA_04438 0.87 -0.6
355,435 - +0.6
355,436 + -0.0
355,436 + +0.1
355,436 + +0.5
355,613 + +0.8
355,694 - BACOVA_04439 0.11 -0.5
355,723 + BACOVA_04439 0.18 -1.6
355,874 + BACOVA_04439 0.55 +1.0
355,874 + BACOVA_04439 0.55 -0.3
355,874 + BACOVA_04439 0.55 +0.5
355,874 + BACOVA_04439 0.55 +0.5
355,874 + BACOVA_04439 0.55 +0.3
355,874 + BACOVA_04439 0.55 +0.2
355,874 + BACOVA_04439 0.55 +0.8
355,875 - BACOVA_04439 0.55 +0.1
355,875 - BACOVA_04439 0.55 -0.8
355,875 - BACOVA_04439 0.55 +0.6
355,875 - BACOVA_04439 0.55 -0.7
355,875 - BACOVA_04439 0.55 +0.3
355,890 - BACOVA_04439 0.59 -0.5
355,937 + BACOVA_04439 0.71 +0.5
355,937 + BACOVA_04439 0.71 +0.3
355,938 - BACOVA_04439 0.71 -0.5
355,938 - BACOVA_04439 0.71 -0.7
355,978 - BACOVA_04439 0.81 +3.0
355,981 + BACOVA_04439 0.81 +0.6
355,981 + BACOVA_04439 0.81 -1.3
355,981 + BACOVA_04439 0.81 +1.0
355,981 + BACOVA_04439 0.81 +0.3
356,020 + +0.6
356,020 + +1.2
356,081 + +0.2
356,082 - +0.8
356,182 - -0.6
356,185 + -1.8
356,196 + -0.1
356,197 - +1.0
356,199 + -0.5
356,231 - -0.1
356,264 - -0.0
356,276 + +0.2
356,284 - -0.4
356,284 - -1.2
356,284 - +0.2
356,298 + BACOVA_04440 0.22 +1.0
356,304 - BACOVA_04440 0.28 -0.3
356,304 - BACOVA_04440 0.28 -1.1
356,336 - BACOVA_04440 0.58 +1.3
356,354 - BACOVA_04440 0.75 +0.8
356,425 + BACOVA_04441 0.14 +0.5
356,434 + BACOVA_04441 0.22 -0.4
356,434 + BACOVA_04441 0.22 +0.3
356,435 - BACOVA_04441 0.23 -0.1

Or see this region's nucleotide sequence