Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02804

Experiment: Locust bean gum 2.5 mg/ml (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_02803 and BACOVA_02804 are separated by 22 nucleotidesBACOVA_02804 and BACOVA_02805 overlap by 4 nucleotides BACOVA_02803: BACOVA_02803 - TonB-linked outer membrane protein, SusC/RagA family, at 264,862 to 267,945 _02803 BACOVA_02804: BACOVA_02804 - SusD family protein, at 267,968 to 269,878 _02804 BACOVA_02805: BACOVA_02805 - TonB-linked outer membrane protein, SusC/RagA family, at 269,875 to 272,988 _02805 Position (kb) 267 268 269 270Strain fitness (log2 ratio) -2 -1 0 1 2at 267.010 kb on + strand, within BACOVA_02803at 267.011 kb on - strand, within BACOVA_02803at 267.062 kb on + strand, within BACOVA_02803at 267.062 kb on + strand, within BACOVA_02803at 267.065 kb on + strand, within BACOVA_02803at 267.066 kb on - strand, within BACOVA_02803at 267.108 kb on + strand, within BACOVA_02803at 267.109 kb on - strand, within BACOVA_02803at 267.109 kb on - strand, within BACOVA_02803at 267.113 kb on + strand, within BACOVA_02803at 267.114 kb on - strand, within BACOVA_02803at 267.120 kb on - strand, within BACOVA_02803at 267.142 kb on - strand, within BACOVA_02803at 267.142 kb on - strand, within BACOVA_02803at 267.182 kb on + strand, within BACOVA_02803at 267.182 kb on + strand, within BACOVA_02803at 267.214 kb on - strand, within BACOVA_02803at 267.352 kb on - strand, within BACOVA_02803at 267.352 kb on - strand, within BACOVA_02803at 267.357 kb on + strand, within BACOVA_02803at 267.358 kb on - strand, within BACOVA_02803at 267.391 kb on + strand, within BACOVA_02803at 267.392 kb on - strand, within BACOVA_02803at 267.405 kb on + strand, within BACOVA_02803at 267.405 kb on + strand, within BACOVA_02803at 267.405 kb on + strand, within BACOVA_02803at 267.405 kb on + strand, within BACOVA_02803at 267.405 kb on + strand, within BACOVA_02803at 267.406 kb on - strand, within BACOVA_02803at 267.454 kb on - strand, within BACOVA_02803at 267.466 kb on - strand, within BACOVA_02803at 267.468 kb on + strand, within BACOVA_02803at 267.468 kb on + strand, within BACOVA_02803at 267.469 kb on - strand, within BACOVA_02803at 267.514 kb on + strand, within BACOVA_02803at 267.530 kb on - strand, within BACOVA_02803at 267.543 kb on + strand, within BACOVA_02803at 267.543 kb on + strand, within BACOVA_02803at 267.544 kb on - strand, within BACOVA_02803at 267.544 kb on - strand, within BACOVA_02803at 267.545 kb on + strand, within BACOVA_02803at 267.545 kb on + strand, within BACOVA_02803at 267.545 kb on + strand, within BACOVA_02803at 267.546 kb on - strand, within BACOVA_02803at 267.651 kb on + strandat 267.651 kb on + strandat 267.652 kb on - strandat 267.653 kb on + strandat 267.653 kb on + strandat 267.660 kb on + strandat 267.738 kb on + strandat 267.738 kb on + strandat 267.738 kb on + strandat 267.739 kb on - strandat 267.739 kb on - strandat 267.739 kb on - strandat 267.739 kb on - strandat 267.740 kb on + strandat 267.742 kb on + strandat 267.742 kb on + strandat 267.793 kb on - strandat 267.820 kb on + strandat 267.894 kb on + strandat 267.904 kb on + strandat 267.904 kb on + strandat 267.914 kb on - strandat 267.922 kb on + strandat 267.922 kb on + strandat 267.923 kb on - strandat 267.924 kb on + strandat 267.925 kb on - strandat 267.926 kb on + strandat 267.926 kb on + strandat 267.930 kb on + strandat 267.931 kb on - strandat 267.948 kb on - strandat 267.962 kb on + strandat 267.995 kb on - strandat 268.039 kb on + strandat 268.086 kb on + strandat 268.087 kb on - strandat 268.106 kb on - strandat 268.108 kb on - strandat 268.108 kb on - strandat 268.146 kb on + strandat 268.232 kb on - strand, within BACOVA_02804at 268.237 kb on - strand, within BACOVA_02804at 268.285 kb on - strand, within BACOVA_02804at 268.334 kb on + strand, within BACOVA_02804at 268.335 kb on - strand, within BACOVA_02804at 268.372 kb on + strand, within BACOVA_02804at 268.414 kb on - strand, within BACOVA_02804at 268.458 kb on + strand, within BACOVA_02804at 268.478 kb on + strand, within BACOVA_02804at 268.478 kb on + strand, within BACOVA_02804at 268.479 kb on - strand, within BACOVA_02804at 268.538 kb on - strand, within BACOVA_02804at 268.538 kb on - strand, within BACOVA_02804at 268.543 kb on + strand, within BACOVA_02804at 268.543 kb on + strand, within BACOVA_02804at 268.544 kb on - strand, within BACOVA_02804at 268.544 kb on - strand, within BACOVA_02804at 268.545 kb on + strand, within BACOVA_02804at 268.570 kb on + strand, within BACOVA_02804at 268.583 kb on - strand, within BACOVA_02804at 268.602 kb on + strand, within BACOVA_02804at 268.614 kb on + strand, within BACOVA_02804at 268.615 kb on - strand, within BACOVA_02804at 268.681 kb on + strand, within BACOVA_02804at 268.682 kb on - strand, within BACOVA_02804at 268.711 kb on - strand, within BACOVA_02804at 268.721 kb on - strand, within BACOVA_02804at 268.767 kb on + strand, within BACOVA_02804at 268.794 kb on + strand, within BACOVA_02804at 268.795 kb on - strand, within BACOVA_02804at 268.798 kb on + strand, within BACOVA_02804at 268.798 kb on + strand, within BACOVA_02804at 268.798 kb on + strand, within BACOVA_02804at 268.799 kb on - strand, within BACOVA_02804at 268.799 kb on - strand, within BACOVA_02804at 268.802 kb on + strand, within BACOVA_02804at 268.826 kb on - strand, within BACOVA_02804at 268.828 kb on - strand, within BACOVA_02804at 268.834 kb on + strand, within BACOVA_02804at 268.834 kb on + strand, within BACOVA_02804at 268.853 kb on - strand, within BACOVA_02804at 268.861 kb on - strand, within BACOVA_02804at 268.861 kb on - strand, within BACOVA_02804at 268.929 kb on - strand, within BACOVA_02804at 268.967 kb on + strand, within BACOVA_02804at 268.978 kb on + strand, within BACOVA_02804at 268.978 kb on + strand, within BACOVA_02804at 268.978 kb on + strand, within BACOVA_02804at 268.978 kb on + strand, within BACOVA_02804at 268.979 kb on - strand, within BACOVA_02804at 268.984 kb on - strand, within BACOVA_02804at 269.011 kb on - strand, within BACOVA_02804at 269.011 kb on - strand, within BACOVA_02804at 269.136 kb on + strand, within BACOVA_02804at 269.136 kb on + strand, within BACOVA_02804at 269.157 kb on - strand, within BACOVA_02804at 269.171 kb on + strand, within BACOVA_02804at 269.210 kb on + strand, within BACOVA_02804at 269.210 kb on + strand, within BACOVA_02804at 269.210 kb on + strand, within BACOVA_02804at 269.211 kb on - strand, within BACOVA_02804at 269.211 kb on - strand, within BACOVA_02804at 269.211 kb on - strand, within BACOVA_02804at 269.212 kb on + strand, within BACOVA_02804at 269.220 kb on + strand, within BACOVA_02804at 269.368 kb on - strand, within BACOVA_02804at 269.438 kb on + strand, within BACOVA_02804at 269.478 kb on + strand, within BACOVA_02804at 269.478 kb on + strand, within BACOVA_02804at 269.479 kb on - strand, within BACOVA_02804at 269.491 kb on + strand, within BACOVA_02804at 269.542 kb on + strand, within BACOVA_02804at 269.542 kb on + strand, within BACOVA_02804at 269.546 kb on - strand, within BACOVA_02804at 269.564 kb on - strand, within BACOVA_02804at 269.611 kb on - strand, within BACOVA_02804at 269.636 kb on + strand, within BACOVA_02804at 269.637 kb on - strand, within BACOVA_02804at 269.637 kb on - strand, within BACOVA_02804at 269.640 kb on + strand, within BACOVA_02804at 269.641 kb on - strand, within BACOVA_02804at 269.641 kb on - strand, within BACOVA_02804at 269.641 kb on - strand, within BACOVA_02804at 269.641 kb on - strand, within BACOVA_02804at 269.644 kb on + strand, within BACOVA_02804at 269.645 kb on - strand, within BACOVA_02804at 269.671 kb on + strand, within BACOVA_02804at 269.679 kb on - strand, within BACOVA_02804at 269.684 kb on - strand, within BACOVA_02804at 269.728 kb on + strandat 269.828 kb on + strandat 269.843 kb on - strandat 269.879 kb on - strandat 269.879 kb on - strandat 269.879 kb on - strandat 269.901 kb on + strandat 269.901 kb on + strandat 269.999 kb on + strandat 269.999 kb on + strandat 270.000 kb on - strandat 270.002 kb on - strandat 270.023 kb on - strandat 270.083 kb on + strandat 270.083 kb on + strandat 270.083 kb on + strandat 270.096 kb on + strandat 270.097 kb on - strandat 270.098 kb on + strandat 270.098 kb on + strandat 270.098 kb on + strandat 270.099 kb on - strandat 270.099 kb on - strandat 270.099 kb on - strandat 270.104 kb on + strandat 270.104 kb on + strandat 270.104 kb on + strandat 270.105 kb on - strandat 270.109 kb on - strandat 270.124 kb on + strandat 270.124 kb on - strandat 270.144 kb on + strandat 270.145 kb on - strandat 270.192 kb on + strand, within BACOVA_02805at 270.222 kb on + strand, within BACOVA_02805at 270.222 kb on + strand, within BACOVA_02805at 270.245 kb on + strand, within BACOVA_02805at 270.246 kb on - strand, within BACOVA_02805at 270.246 kb on - strand, within BACOVA_02805at 270.253 kb on + strand, within BACOVA_02805at 270.254 kb on - strand, within BACOVA_02805at 270.277 kb on - strand, within BACOVA_02805at 270.294 kb on + strand, within BACOVA_02805at 270.331 kb on - strand, within BACOVA_02805at 270.486 kb on - strand, within BACOVA_02805at 270.486 kb on - strand, within BACOVA_02805at 270.486 kb on - strand, within BACOVA_02805at 270.490 kb on - strand, within BACOVA_02805at 270.525 kb on - strand, within BACOVA_02805at 270.525 kb on - strand, within BACOVA_02805at 270.699 kb on + strand, within BACOVA_02805at 270.705 kb on + strand, within BACOVA_02805at 270.759 kb on + strand, within BACOVA_02805at 270.760 kb on - strand, within BACOVA_02805at 270.762 kb on + strand, within BACOVA_02805at 270.763 kb on - strand, within BACOVA_02805at 270.781 kb on - strand, within BACOVA_02805at 270.783 kb on + strand, within BACOVA_02805at 270.783 kb on + strand, within BACOVA_02805at 270.784 kb on - strand, within BACOVA_02805at 270.810 kb on + strand, within BACOVA_02805at 270.810 kb on + strand, within BACOVA_02805at 270.833 kb on - strand, within BACOVA_02805at 270.836 kb on - strand, within BACOVA_02805at 270.858 kb on + strand, within BACOVA_02805at 270.861 kb on + strand, within BACOVA_02805at 270.862 kb on - strand, within BACOVA_02805

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Locust bean gum 2.5 mg/ml (C)
remove
267,010 + BACOVA_02803 0.70 -0.0
267,011 - BACOVA_02803 0.70 +0.4
267,062 + BACOVA_02803 0.71 -0.4
267,062 + BACOVA_02803 0.71 +1.3
267,065 + BACOVA_02803 0.71 +0.4
267,066 - BACOVA_02803 0.71 +0.6
267,108 + BACOVA_02803 0.73 +0.4
267,109 - BACOVA_02803 0.73 -0.6
267,109 - BACOVA_02803 0.73 +0.1
267,113 + BACOVA_02803 0.73 +0.3
267,114 - BACOVA_02803 0.73 +0.2
267,120 - BACOVA_02803 0.73 -0.3
267,142 - BACOVA_02803 0.74 -0.4
267,142 - BACOVA_02803 0.74 +0.4
267,182 + BACOVA_02803 0.75 -0.8
267,182 + BACOVA_02803 0.75 +0.2
267,214 - BACOVA_02803 0.76 -0.0
267,352 - BACOVA_02803 0.81 +1.4
267,352 - BACOVA_02803 0.81 -0.7
267,357 + BACOVA_02803 0.81 -0.7
267,358 - BACOVA_02803 0.81 -0.2
267,391 + BACOVA_02803 0.82 +1.3
267,392 - BACOVA_02803 0.82 +0.5
267,405 + BACOVA_02803 0.82 -0.1
267,405 + BACOVA_02803 0.82 -0.1
267,405 + BACOVA_02803 0.82 -1.3
267,405 + BACOVA_02803 0.82 -0.2
267,405 + BACOVA_02803 0.82 -1.3
267,406 - BACOVA_02803 0.82 +0.0
267,454 - BACOVA_02803 0.84 -1.3
267,466 - BACOVA_02803 0.84 +0.3
267,468 + BACOVA_02803 0.85 -0.5
267,468 + BACOVA_02803 0.85 +0.8
267,469 - BACOVA_02803 0.85 -0.1
267,514 + BACOVA_02803 0.86 +0.4
267,530 - BACOVA_02803 0.87 -0.6
267,543 + BACOVA_02803 0.87 +0.2
267,543 + BACOVA_02803 0.87 -0.0
267,544 - BACOVA_02803 0.87 +0.6
267,544 - BACOVA_02803 0.87 +0.5
267,545 + BACOVA_02803 0.87 -0.5
267,545 + BACOVA_02803 0.87 +0.1
267,545 + BACOVA_02803 0.87 -0.7
267,546 - BACOVA_02803 0.87 +0.2
267,651 + -0.2
267,651 + -1.0
267,652 - +0.3
267,653 + +0.1
267,653 + +0.7
267,660 + -0.9
267,738 + +0.1
267,738 + +0.0
267,738 + +0.4
267,739 - +1.4
267,739 - -0.6
267,739 - -0.0
267,739 - +1.0
267,740 + -0.3
267,742 + +0.5
267,742 + +0.3
267,793 - -0.1
267,820 + +0.8
267,894 + +0.8
267,904 + -0.0
267,904 + +0.2
267,914 - -1.1
267,922 + +1.0
267,922 + -0.6
267,923 - -1.1
267,924 + -0.2
267,925 - +1.5
267,926 + -0.3
267,926 + -0.2
267,930 + -1.5
267,931 - +0.0
267,948 - -0.0
267,962 + -1.1
267,995 - -1.0
268,039 + +0.7
268,086 + +1.4
268,087 - -1.8
268,106 - -0.2
268,108 - -2.5
268,108 - -0.9
268,146 + -0.4
268,232 - BACOVA_02804 0.14 -0.6
268,237 - BACOVA_02804 0.14 -0.7
268,285 - BACOVA_02804 0.17 -1.5
268,334 + BACOVA_02804 0.19 -0.6
268,335 - BACOVA_02804 0.19 +1.3
268,372 + BACOVA_02804 0.21 -0.0
268,414 - BACOVA_02804 0.23 -1.5
268,458 + BACOVA_02804 0.26 +0.2
268,478 + BACOVA_02804 0.27 -1.8
268,478 + BACOVA_02804 0.27 +1.0
268,479 - BACOVA_02804 0.27 +0.7
268,538 - BACOVA_02804 0.30 +0.1
268,538 - BACOVA_02804 0.30 +0.2
268,543 + BACOVA_02804 0.30 +0.8
268,543 + BACOVA_02804 0.30 -0.3
268,544 - BACOVA_02804 0.30 -0.8
268,544 - BACOVA_02804 0.30 +0.4
268,545 + BACOVA_02804 0.30 -0.4
268,570 + BACOVA_02804 0.32 +0.0
268,583 - BACOVA_02804 0.32 -1.6
268,602 + BACOVA_02804 0.33 -0.6
268,614 + BACOVA_02804 0.34 -0.6
268,615 - BACOVA_02804 0.34 -0.3
268,681 + BACOVA_02804 0.37 -0.3
268,682 - BACOVA_02804 0.37 -1.1
268,711 - BACOVA_02804 0.39 -1.5
268,721 - BACOVA_02804 0.39 +0.1
268,767 + BACOVA_02804 0.42 +0.8
268,794 + BACOVA_02804 0.43 +0.2
268,795 - BACOVA_02804 0.43 -0.8
268,798 + BACOVA_02804 0.43 +0.6
268,798 + BACOVA_02804 0.43 +0.3
268,798 + BACOVA_02804 0.43 -0.9
268,799 - BACOVA_02804 0.43 +0.7
268,799 - BACOVA_02804 0.43 -0.3
268,802 + BACOVA_02804 0.44 -0.4
268,826 - BACOVA_02804 0.45 -1.3
268,828 - BACOVA_02804 0.45 -0.4
268,834 + BACOVA_02804 0.45 +0.3
268,834 + BACOVA_02804 0.45 +0.4
268,853 - BACOVA_02804 0.46 -0.3
268,861 - BACOVA_02804 0.47 +1.3
268,861 - BACOVA_02804 0.47 +0.8
268,929 - BACOVA_02804 0.50 -0.9
268,967 + BACOVA_02804 0.52 -0.7
268,978 + BACOVA_02804 0.53 -0.3
268,978 + BACOVA_02804 0.53 +0.1
268,978 + BACOVA_02804 0.53 +0.7
268,978 + BACOVA_02804 0.53 -0.4
268,979 - BACOVA_02804 0.53 -0.9
268,984 - BACOVA_02804 0.53 +1.0
269,011 - BACOVA_02804 0.55 +1.3
269,011 - BACOVA_02804 0.55 +1.0
269,136 + BACOVA_02804 0.61 +2.1
269,136 + BACOVA_02804 0.61 +0.4
269,157 - BACOVA_02804 0.62 -0.4
269,171 + BACOVA_02804 0.63 +0.0
269,210 + BACOVA_02804 0.65 +1.1
269,210 + BACOVA_02804 0.65 -0.8
269,210 + BACOVA_02804 0.65 +0.3
269,211 - BACOVA_02804 0.65 +0.3
269,211 - BACOVA_02804 0.65 +0.3
269,211 - BACOVA_02804 0.65 -1.0
269,212 + BACOVA_02804 0.65 -0.1
269,220 + BACOVA_02804 0.66 -0.3
269,368 - BACOVA_02804 0.73 -1.0
269,438 + BACOVA_02804 0.77 +0.1
269,478 + BACOVA_02804 0.79 +0.7
269,478 + BACOVA_02804 0.79 +0.4
269,479 - BACOVA_02804 0.79 -0.6
269,491 + BACOVA_02804 0.80 +0.8
269,542 + BACOVA_02804 0.82 +0.4
269,542 + BACOVA_02804 0.82 -0.1
269,546 - BACOVA_02804 0.83 -0.6
269,564 - BACOVA_02804 0.84 +0.1
269,611 - BACOVA_02804 0.86 +0.2
269,636 + BACOVA_02804 0.87 +0.2
269,637 - BACOVA_02804 0.87 +0.1
269,637 - BACOVA_02804 0.87 +0.0
269,640 + BACOVA_02804 0.87 -0.7
269,641 - BACOVA_02804 0.88 +0.2
269,641 - BACOVA_02804 0.88 -1.0
269,641 - BACOVA_02804 0.88 +0.1
269,641 - BACOVA_02804 0.88 -0.6
269,644 + BACOVA_02804 0.88 -0.2
269,645 - BACOVA_02804 0.88 +1.0
269,671 + BACOVA_02804 0.89 -0.4
269,679 - BACOVA_02804 0.90 +0.7
269,684 - BACOVA_02804 0.90 +0.4
269,728 + -0.1
269,828 + +1.0
269,843 - -0.6
269,879 - +1.0
269,879 - -1.7
269,879 - -1.1
269,901 + -0.2
269,901 + +0.4
269,999 + -0.5
269,999 + +2.1
270,000 - +1.0
270,002 - -2.3
270,023 - +0.6
270,083 + +0.6
270,083 + -0.1
270,083 + -0.4
270,096 + +0.4
270,097 - -0.1
270,098 + +0.4
270,098 + +0.6
270,098 + +0.7
270,099 - +0.9
270,099 - -0.2
270,099 - -1.1
270,104 + +0.8
270,104 + -0.0
270,104 + -0.0
270,105 - -1.4
270,109 - +0.1
270,124 + -1.1
270,124 - -1.4
270,144 + -0.8
270,145 - +0.3
270,192 + BACOVA_02805 0.10 -0.0
270,222 + BACOVA_02805 0.11 +0.7
270,222 + BACOVA_02805 0.11 -0.4
270,245 + BACOVA_02805 0.12 +0.7
270,246 - BACOVA_02805 0.12 +0.2
270,246 - BACOVA_02805 0.12 -0.3
270,253 + BACOVA_02805 0.12 -0.7
270,254 - BACOVA_02805 0.12 +1.0
270,277 - BACOVA_02805 0.13 +0.6
270,294 + BACOVA_02805 0.13 +0.2
270,331 - BACOVA_02805 0.15 +0.0
270,486 - BACOVA_02805 0.20 +0.9
270,486 - BACOVA_02805 0.20 +0.3
270,486 - BACOVA_02805 0.20 +1.0
270,490 - BACOVA_02805 0.20 +1.4
270,525 - BACOVA_02805 0.21 -0.3
270,525 - BACOVA_02805 0.21 -0.0
270,699 + BACOVA_02805 0.26 +0.4
270,705 + BACOVA_02805 0.27 +0.1
270,759 + BACOVA_02805 0.28 +0.7
270,760 - BACOVA_02805 0.28 -0.9
270,762 + BACOVA_02805 0.28 +0.8
270,763 - BACOVA_02805 0.29 -0.9
270,781 - BACOVA_02805 0.29 -0.2
270,783 + BACOVA_02805 0.29 -0.3
270,783 + BACOVA_02805 0.29 -0.4
270,784 - BACOVA_02805 0.29 -0.2
270,810 + BACOVA_02805 0.30 +0.3
270,810 + BACOVA_02805 0.30 -0.3
270,833 - BACOVA_02805 0.31 +0.5
270,836 - BACOVA_02805 0.31 -0.0
270,858 + BACOVA_02805 0.32 +0.3
270,861 + BACOVA_02805 0.32 -0.3
270,862 - BACOVA_02805 0.32 -0.3

Or see this region's nucleotide sequence