Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_00093

Experiment: Locust bean gum 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_00092 and BACOVA_00093 are separated by 152 nucleotidesBACOVA_00093 and BACOVA_00094 are separated by 26 nucleotides BACOVA_00092: BACOVA_00092 - catalase, at 4,041 to 5,501 _00092 BACOVA_00093: BACOVA_00093 - hypothetical protein, at 5,654 to 5,779 _00093 BACOVA_00094: BACOVA_00094 - NAD(P)-specific glutamate dehydrogenase, at 5,806 to 7,140 _00094 Position (kb) 5 6Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4.664 kb on + strand, within BACOVA_00092at 4.664 kb on + strand, within BACOVA_00092at 4.853 kb on + strand, within BACOVA_00092at 4.854 kb on - strand, within BACOVA_00092at 4.877 kb on + strand, within BACOVA_00092at 4.878 kb on - strand, within BACOVA_00092at 4.878 kb on - strand, within BACOVA_00092at 4.878 kb on - strand, within BACOVA_00092at 4.898 kb on + strand, within BACOVA_00092at 4.905 kb on - strand, within BACOVA_00092at 4.906 kb on + strand, within BACOVA_00092at 4.906 kb on + strand, within BACOVA_00092at 4.940 kb on - strand, within BACOVA_00092at 4.953 kb on - strand, within BACOVA_00092at 4.974 kb on - strand, within BACOVA_00092at 4.976 kb on + strand, within BACOVA_00092at 4.986 kb on + strand, within BACOVA_00092at 4.986 kb on + strand, within BACOVA_00092at 4.986 kb on + strand, within BACOVA_00092at 4.987 kb on - strand, within BACOVA_00092at 5.022 kb on - strand, within BACOVA_00092at 5.088 kb on - strand, within BACOVA_00092at 5.101 kb on - strand, within BACOVA_00092at 5.109 kb on + strand, within BACOVA_00092at 5.156 kb on - strand, within BACOVA_00092at 5.284 kb on + strand, within BACOVA_00092at 5.291 kb on + strand, within BACOVA_00092at 5.291 kb on + strand, within BACOVA_00092at 5.291 kb on + strand, within BACOVA_00092at 5.309 kb on + strand, within BACOVA_00092at 5.309 kb on + strand, within BACOVA_00092at 5.310 kb on - strand, within BACOVA_00092at 5.315 kb on + strand, within BACOVA_00092at 5.316 kb on - strand, within BACOVA_00092at 5.345 kb on + strand, within BACOVA_00092at 5.346 kb on - strand, within BACOVA_00092at 5.392 kb on - strandat 5.392 kb on - strandat 5.393 kb on + strandat 5.393 kb on + strandat 5.409 kb on + strandat 5.415 kb on + strandat 5.416 kb on - strandat 5.528 kb on + strandat 5.528 kb on + strandat 5.530 kb on + strandat 5.530 kb on + strandat 5.549 kb on + strandat 5.550 kb on - strandat 5.570 kb on + strandat 5.571 kb on - strandat 5.573 kb on + strandat 5.574 kb on - strandat 5.575 kb on + strandat 5.576 kb on - strandat 5.577 kb on + strandat 5.578 kb on - strandat 5.586 kb on + strandat 5.628 kb on - strandat 5.640 kb on + strandat 5.640 kb on + strandat 5.641 kb on - strandat 5.641 kb on - strandat 5.659 kb on + strandat 5.659 kb on + strandat 5.659 kb on + strandat 5.659 kb on + strandat 5.660 kb on - strandat 5.660 kb on - strandat 5.660 kb on - strandat 5.682 kb on - strand, within BACOVA_00093at 5.714 kb on + strand, within BACOVA_00093at 5.714 kb on + strand, within BACOVA_00093at 5.714 kb on + strand, within BACOVA_00093at 5.714 kb on + strand, within BACOVA_00093at 5.715 kb on - strand, within BACOVA_00093at 5.715 kb on - strand, within BACOVA_00093at 5.777 kb on + strandat 5.778 kb on - strandat 5.785 kb on - strandat 5.789 kb on + strandat 5.790 kb on - strandat 5.790 kb on - strandat 5.790 kb on - strandat 5.790 kb on - strandat 5.791 kb on + strandat 5.792 kb on - strandat 5.792 kb on - strandat 5.792 kb on - strandat 5.792 kb on - strandat 5.792 kb on - strandat 5.792 kb on - strandat 5.794 kb on - strandat 5.809 kb on + strandat 5.810 kb on - strandat 5.810 kb on - strandat 5.863 kb on - strandat 5.876 kb on + strandat 5.876 kb on + strandat 5.877 kb on - strandat 5.881 kb on + strandat 5.882 kb on - strandat 5.882 kb on - strandat 5.886 kb on - strandat 5.981 kb on - strand, within BACOVA_00094at 6.023 kb on - strand, within BACOVA_00094at 6.057 kb on - strand, within BACOVA_00094at 6.088 kb on - strand, within BACOVA_00094at 6.100 kb on - strand, within BACOVA_00094at 6.111 kb on + strand, within BACOVA_00094at 6.111 kb on + strand, within BACOVA_00094at 6.111 kb on + strand, within BACOVA_00094at 6.112 kb on - strand, within BACOVA_00094at 6.125 kb on - strand, within BACOVA_00094at 6.145 kb on + strand, within BACOVA_00094at 6.145 kb on + strand, within BACOVA_00094at 6.238 kb on + strand, within BACOVA_00094at 6.238 kb on + strand, within BACOVA_00094at 6.243 kb on - strand, within BACOVA_00094at 6.254 kb on + strand, within BACOVA_00094at 6.309 kb on + strand, within BACOVA_00094at 6.310 kb on - strand, within BACOVA_00094at 6.311 kb on + strand, within BACOVA_00094at 6.352 kb on - strand, within BACOVA_00094at 6.352 kb on - strand, within BACOVA_00094at 6.354 kb on - strand, within BACOVA_00094at 6.376 kb on - strand, within BACOVA_00094at 6.415 kb on - strand, within BACOVA_00094at 6.503 kb on + strand, within BACOVA_00094at 6.503 kb on + strand, within BACOVA_00094at 6.522 kb on + strand, within BACOVA_00094at 6.523 kb on - strand, within BACOVA_00094at 6.523 kb on - strand, within BACOVA_00094at 6.565 kb on - strand, within BACOVA_00094at 6.606 kb on - strand, within BACOVA_00094at 6.610 kb on - strand, within BACOVA_00094at 6.712 kb on + strand, within BACOVA_00094at 6.724 kb on + strand, within BACOVA_00094at 6.724 kb on + strand, within BACOVA_00094at 6.725 kb on - strand, within BACOVA_00094at 6.771 kb on + strand, within BACOVA_00094at 6.771 kb on + strand, within BACOVA_00094at 6.771 kb on + strand, within BACOVA_00094at 6.772 kb on - strand, within BACOVA_00094

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Per-strain Table

Position Strand Gene LocusTag Fraction Locust bean gum 2.5 mg/ml (C)
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4,664 + BACOVA_00092 0.43 -0.5
4,664 + BACOVA_00092 0.43 +0.4
4,853 + BACOVA_00092 0.56 -0.9
4,854 - BACOVA_00092 0.56 +0.8
4,877 + BACOVA_00092 0.57 +1.5
4,878 - BACOVA_00092 0.57 -1.4
4,878 - BACOVA_00092 0.57 -0.6
4,878 - BACOVA_00092 0.57 -0.4
4,898 + BACOVA_00092 0.59 +1.7
4,905 - BACOVA_00092 0.59 +0.3
4,906 + BACOVA_00092 0.59 -1.4
4,906 + BACOVA_00092 0.59 -0.2
4,940 - BACOVA_00092 0.62 +0.5
4,953 - BACOVA_00092 0.62 -0.9
4,974 - BACOVA_00092 0.64 -0.6
4,976 + BACOVA_00092 0.64 -0.4
4,986 + BACOVA_00092 0.65 +0.8
4,986 + BACOVA_00092 0.65 -0.5
4,986 + BACOVA_00092 0.65 +0.0
4,987 - BACOVA_00092 0.65 +1.1
5,022 - BACOVA_00092 0.67 +0.9
5,088 - BACOVA_00092 0.72 +0.4
5,101 - BACOVA_00092 0.73 +0.1
5,109 + BACOVA_00092 0.73 -0.3
5,156 - BACOVA_00092 0.76 -0.4
5,284 + BACOVA_00092 0.85 +1.3
5,291 + BACOVA_00092 0.86 +0.8
5,291 + BACOVA_00092 0.86 -0.6
5,291 + BACOVA_00092 0.86 +0.1
5,309 + BACOVA_00092 0.87 -0.6
5,309 + BACOVA_00092 0.87 -0.5
5,310 - BACOVA_00092 0.87 -0.4
5,315 + BACOVA_00092 0.87 +0.6
5,316 - BACOVA_00092 0.87 -0.0
5,345 + BACOVA_00092 0.89 +1.0
5,346 - BACOVA_00092 0.89 -0.1
5,392 - +0.5
5,392 - -0.1
5,393 + +0.4
5,393 + -0.9
5,409 + +2.0
5,415 + -1.9
5,416 - -0.2
5,528 + -0.4
5,528 + +1.0
5,530 + +0.4
5,530 + -1.0
5,549 + +0.6
5,550 - +0.1
5,570 + +0.8
5,571 - +1.0
5,573 + +0.3
5,574 - +0.4
5,575 + -0.4
5,576 - -0.0
5,577 + -0.5
5,578 - +0.4
5,586 + +0.5
5,628 - +0.0
5,640 + +0.2
5,640 + -1.3
5,641 - -0.0
5,641 - +0.7
5,659 + +0.3
5,659 + +0.2
5,659 + -0.0
5,659 + +0.3
5,660 - -0.5
5,660 - -0.9
5,660 - +0.1
5,682 - BACOVA_00093 0.22 +2.5
5,714 + BACOVA_00093 0.48 -0.4
5,714 + BACOVA_00093 0.48 +0.4
5,714 + BACOVA_00093 0.48 -0.2
5,714 + BACOVA_00093 0.48 +0.2
5,715 - BACOVA_00093 0.48 +0.5
5,715 - BACOVA_00093 0.48 +0.5
5,777 + +0.5
5,778 - -0.6
5,785 - -1.5
5,789 + -0.0
5,790 - -1.9
5,790 - -0.0
5,790 - -0.1
5,790 - -0.7
5,791 + +0.4
5,792 - -0.4
5,792 - +0.1
5,792 - +0.4
5,792 - +0.1
5,792 - +0.4
5,792 - +0.2
5,794 - +0.2
5,809 + -2.3
5,810 - -1.5
5,810 - -1.1
5,863 - -2.7
5,876 + -0.0
5,876 + -2.8
5,877 - -1.1
5,881 + -0.8
5,882 - -2.4
5,882 - -1.6
5,886 - -1.9
5,981 - BACOVA_00094 0.13 -3.3
6,023 - BACOVA_00094 0.16 -2.1
6,057 - BACOVA_00094 0.19 -2.3
6,088 - BACOVA_00094 0.21 -2.0
6,100 - BACOVA_00094 0.22 -2.1
6,111 + BACOVA_00094 0.23 -2.0
6,111 + BACOVA_00094 0.23 -3.1
6,111 + BACOVA_00094 0.23 -1.9
6,112 - BACOVA_00094 0.23 +0.2
6,125 - BACOVA_00094 0.24 -2.0
6,145 + BACOVA_00094 0.25 -3.0
6,145 + BACOVA_00094 0.25 -3.1
6,238 + BACOVA_00094 0.32 -2.0
6,238 + BACOVA_00094 0.32 -2.4
6,243 - BACOVA_00094 0.33 -2.3
6,254 + BACOVA_00094 0.34 -2.0
6,309 + BACOVA_00094 0.38 -0.6
6,310 - BACOVA_00094 0.38 -2.2
6,311 + BACOVA_00094 0.38 -1.6
6,352 - BACOVA_00094 0.41 -3.4
6,352 - BACOVA_00094 0.41 -2.0
6,354 - BACOVA_00094 0.41 -3.7
6,376 - BACOVA_00094 0.43 -0.0
6,415 - BACOVA_00094 0.46 -1.9
6,503 + BACOVA_00094 0.52 -2.0
6,503 + BACOVA_00094 0.52 -1.8
6,522 + BACOVA_00094 0.54 -1.9
6,523 - BACOVA_00094 0.54 -1.0
6,523 - BACOVA_00094 0.54 -2.3
6,565 - BACOVA_00094 0.57 -2.3
6,606 - BACOVA_00094 0.60 -2.4
6,610 - BACOVA_00094 0.60 -2.2
6,712 + BACOVA_00094 0.68 -1.8
6,724 + BACOVA_00094 0.69 -1.0
6,724 + BACOVA_00094 0.69 -1.0
6,725 - BACOVA_00094 0.69 -1.5
6,771 + BACOVA_00094 0.72 -1.4
6,771 + BACOVA_00094 0.72 -3.1
6,771 + BACOVA_00094 0.72 +1.0
6,772 - BACOVA_00094 0.72 -1.9

Or see this region's nucleotide sequence