Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_05245

Experiment: polygalacturonic 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_05243 and BACOVA_05244 overlap by 8 nucleotidesBACOVA_05244 and BACOVA_05245 are separated by 9 nucleotidesBACOVA_05245 and BACOVA_05246 overlap by 8 nucleotidesBACOVA_05246 and BACOVA_05247 are separated by 18 nucleotides BACOVA_05243: BACOVA_05243 - Methyl-viologen-reducing hydrogenase, delta subunit, at 743,440 to 743,913 _05243 BACOVA_05244: BACOVA_05244 - 4Fe-4S binding domain protein, at 743,906 to 744,706 _05244 BACOVA_05245: BACOVA_05245 - 4Fe-4S binding domain protein, at 744,716 to 745,729 _05245 BACOVA_05246: BACOVA_05246 - oxidoreductase NAD-binding domain protein, at 745,722 to 746,564 _05246 BACOVA_05247: BACOVA_05247 - hypothetical protein, at 746,583 to 746,708 _05247 Position (kb) 744 745 746Strain fitness (log2 ratio) -3 -2 -1 0 1at 743.724 kb on - strand, within BACOVA_05243at 743.760 kb on - strand, within BACOVA_05243at 743.760 kb on - strand, within BACOVA_05243at 743.902 kb on - strandat 743.941 kb on - strandat 743.967 kb on + strandat 743.973 kb on - strandat 744.061 kb on + strand, within BACOVA_05244at 744.094 kb on - strand, within BACOVA_05244at 744.115 kb on + strand, within BACOVA_05244at 744.116 kb on - strand, within BACOVA_05244at 744.184 kb on + strand, within BACOVA_05244at 744.185 kb on - strand, within BACOVA_05244at 744.224 kb on - strand, within BACOVA_05244at 744.258 kb on - strand, within BACOVA_05244at 744.373 kb on + strand, within BACOVA_05244at 744.374 kb on - strand, within BACOVA_05244at 744.427 kb on + strand, within BACOVA_05244at 744.428 kb on - strand, within BACOVA_05244at 744.484 kb on + strand, within BACOVA_05244at 744.530 kb on - strand, within BACOVA_05244at 744.548 kb on - strand, within BACOVA_05244at 744.596 kb on - strand, within BACOVA_05244at 744.661 kb on - strandat 744.700 kb on - strandat 744.705 kb on - strandat 744.730 kb on + strandat 744.819 kb on + strand, within BACOVA_05245at 744.820 kb on - strand, within BACOVA_05245at 744.852 kb on + strand, within BACOVA_05245at 744.863 kb on + strand, within BACOVA_05245at 744.864 kb on - strand, within BACOVA_05245at 744.926 kb on + strand, within BACOVA_05245at 744.970 kb on + strand, within BACOVA_05245at 744.970 kb on + strand, within BACOVA_05245at 744.975 kb on + strand, within BACOVA_05245at 745.059 kb on - strand, within BACOVA_05245at 745.060 kb on + strand, within BACOVA_05245at 745.061 kb on - strand, within BACOVA_05245at 745.071 kb on + strand, within BACOVA_05245at 745.071 kb on + strand, within BACOVA_05245at 745.101 kb on + strand, within BACOVA_05245at 745.102 kb on - strand, within BACOVA_05245at 745.111 kb on - strand, within BACOVA_05245at 745.145 kb on - strand, within BACOVA_05245at 745.280 kb on - strand, within BACOVA_05245at 745.300 kb on + strand, within BACOVA_05245at 745.310 kb on + strand, within BACOVA_05245at 745.311 kb on - strand, within BACOVA_05245at 745.311 kb on - strand, within BACOVA_05245at 745.346 kb on - strand, within BACOVA_05245at 745.434 kb on - strand, within BACOVA_05245at 745.535 kb on - strand, within BACOVA_05245at 745.543 kb on + strand, within BACOVA_05245at 745.544 kb on - strand, within BACOVA_05245at 745.603 kb on + strand, within BACOVA_05245at 745.604 kb on - strand, within BACOVA_05245at 745.613 kb on + strand, within BACOVA_05245at 745.614 kb on - strand, within BACOVA_05245at 745.615 kb on + strand, within BACOVA_05245at 745.616 kb on - strand, within BACOVA_05245at 745.685 kb on - strandat 745.685 kb on - strandat 745.690 kb on + strandat 745.692 kb on + strandat 745.692 kb on + strandat 745.693 kb on - strandat 745.704 kb on + strandat 745.705 kb on - strandat 745.742 kb on - strandat 745.743 kb on + strandat 745.743 kb on + strandat 745.744 kb on - strandat 745.744 kb on - strandat 745.872 kb on + strand, within BACOVA_05246at 745.935 kb on + strand, within BACOVA_05246at 745.937 kb on + strand, within BACOVA_05246at 745.946 kb on + strand, within BACOVA_05246at 745.946 kb on + strand, within BACOVA_05246at 746.087 kb on + strand, within BACOVA_05246at 746.090 kb on - strand, within BACOVA_05246at 746.090 kb on - strand, within BACOVA_05246at 746.153 kb on + strand, within BACOVA_05246at 746.153 kb on + strand, within BACOVA_05246at 746.155 kb on + strand, within BACOVA_05246at 746.156 kb on - strand, within BACOVA_05246at 746.198 kb on + strand, within BACOVA_05246at 746.199 kb on - strand, within BACOVA_05246at 746.199 kb on - strand, within BACOVA_05246at 746.250 kb on - strand, within BACOVA_05246at 746.250 kb on - strand, within BACOVA_05246at 746.342 kb on + strand, within BACOVA_05246at 746.343 kb on - strand, within BACOVA_05246at 746.354 kb on - strand, within BACOVA_05246at 746.396 kb on - strand, within BACOVA_05246at 746.408 kb on - strand, within BACOVA_05246at 746.431 kb on - strand, within BACOVA_05246at 746.433 kb on - strand, within BACOVA_05246at 746.483 kb on + strandat 746.522 kb on - strandat 746.546 kb on + strandat 746.546 kb on + strandat 746.547 kb on - strandat 746.547 kb on - strandat 746.562 kb on + strandat 746.563 kb on - strandat 746.563 kb on - strandat 746.618 kb on + strand, within BACOVA_05247at 746.639 kb on + strand, within BACOVA_05247at 746.639 kb on + strand, within BACOVA_05247at 746.641 kb on + strand, within BACOVA_05247at 746.643 kb on + strand, within BACOVA_05247at 746.643 kb on + strand, within BACOVA_05247at 746.644 kb on - strand, within BACOVA_05247at 746.666 kb on - strand, within BACOVA_05247at 746.687 kb on + strand, within BACOVA_05247at 746.725 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction polygalacturonic 2.5 mg/ml (C)
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743,724 - BACOVA_05243 0.60 -0.1
743,760 - BACOVA_05243 0.68 +0.6
743,760 - BACOVA_05243 0.68 +0.1
743,902 - -0.5
743,941 - +0.5
743,967 + -1.7
743,973 - -0.1
744,061 + BACOVA_05244 0.19 -1.8
744,094 - BACOVA_05244 0.23 -1.4
744,115 + BACOVA_05244 0.26 -0.8
744,116 - BACOVA_05244 0.26 -1.2
744,184 + BACOVA_05244 0.35 -0.9
744,185 - BACOVA_05244 0.35 +0.1
744,224 - BACOVA_05244 0.40 +0.6
744,258 - BACOVA_05244 0.44 -0.0
744,373 + BACOVA_05244 0.58 -1.3
744,374 - BACOVA_05244 0.58 -1.4
744,427 + BACOVA_05244 0.65 +0.1
744,428 - BACOVA_05244 0.65 -0.9
744,484 + BACOVA_05244 0.72 -0.2
744,530 - BACOVA_05244 0.78 +0.1
744,548 - BACOVA_05244 0.80 +0.2
744,596 - BACOVA_05244 0.86 -0.4
744,661 - -2.3
744,700 - +0.7
744,705 - +0.8
744,730 + -0.7
744,819 + BACOVA_05245 0.10 -1.8
744,820 - BACOVA_05245 0.10 -0.6
744,852 + BACOVA_05245 0.13 -1.2
744,863 + BACOVA_05245 0.14 +0.1
744,864 - BACOVA_05245 0.15 -0.3
744,926 + BACOVA_05245 0.21 +1.4
744,970 + BACOVA_05245 0.25 -0.7
744,970 + BACOVA_05245 0.25 -0.9
744,975 + BACOVA_05245 0.26 +0.7
745,059 - BACOVA_05245 0.34 +0.7
745,060 + BACOVA_05245 0.34 -0.2
745,061 - BACOVA_05245 0.34 -2.2
745,071 + BACOVA_05245 0.35 +0.4
745,071 + BACOVA_05245 0.35 -2.0
745,101 + BACOVA_05245 0.38 -1.2
745,102 - BACOVA_05245 0.38 +0.4
745,111 - BACOVA_05245 0.39 -0.2
745,145 - BACOVA_05245 0.42 +0.0
745,280 - BACOVA_05245 0.56 -1.0
745,300 + BACOVA_05245 0.58 +1.1
745,310 + BACOVA_05245 0.59 -0.8
745,311 - BACOVA_05245 0.59 -0.4
745,311 - BACOVA_05245 0.59 -0.7
745,346 - BACOVA_05245 0.62 +0.8
745,434 - BACOVA_05245 0.71 -0.7
745,535 - BACOVA_05245 0.81 -0.1
745,543 + BACOVA_05245 0.82 -0.5
745,544 - BACOVA_05245 0.82 -0.0
745,603 + BACOVA_05245 0.87 -1.8
745,604 - BACOVA_05245 0.88 +0.4
745,613 + BACOVA_05245 0.88 -2.0
745,614 - BACOVA_05245 0.89 +0.5
745,615 + BACOVA_05245 0.89 -1.3
745,616 - BACOVA_05245 0.89 -0.5
745,685 - -1.7
745,685 - +1.1
745,690 + -1.2
745,692 + -2.2
745,692 + -0.1
745,693 - -1.4
745,704 + -1.5
745,705 - +0.6
745,742 - -0.8
745,743 + -2.9
745,743 + +0.1
745,744 - +0.4
745,744 - -0.1
745,872 + BACOVA_05246 0.18 -3.5
745,935 + BACOVA_05246 0.25 -1.8
745,937 + BACOVA_05246 0.26 -2.8
745,946 + BACOVA_05246 0.27 +0.4
745,946 + BACOVA_05246 0.27 -1.7
746,087 + BACOVA_05246 0.43 -2.4
746,090 - BACOVA_05246 0.44 -0.3
746,090 - BACOVA_05246 0.44 -1.1
746,153 + BACOVA_05246 0.51 -2.1
746,153 + BACOVA_05246 0.51 -1.9
746,155 + BACOVA_05246 0.51 -1.7
746,156 - BACOVA_05246 0.51 -0.3
746,198 + BACOVA_05246 0.56 -0.9
746,199 - BACOVA_05246 0.57 +0.1
746,199 - BACOVA_05246 0.57 -1.2
746,250 - BACOVA_05246 0.63 -0.1
746,250 - BACOVA_05246 0.63 +0.6
746,342 + BACOVA_05246 0.74 -1.5
746,343 - BACOVA_05246 0.74 -0.1
746,354 - BACOVA_05246 0.75 -0.1
746,396 - BACOVA_05246 0.80 +0.5
746,408 - BACOVA_05246 0.81 +0.8
746,431 - BACOVA_05246 0.84 -1.7
746,433 - BACOVA_05246 0.84 +0.6
746,483 + +1.1
746,522 - -1.5
746,546 + -2.3
746,546 + -1.0
746,547 - +0.3
746,547 - +0.1
746,562 + -2.7
746,563 - -0.5
746,563 - +0.0
746,618 + BACOVA_05247 0.28 -2.1
746,639 + BACOVA_05247 0.44 -2.3
746,639 + BACOVA_05247 0.44 -2.4
746,641 + BACOVA_05247 0.46 -1.0
746,643 + BACOVA_05247 0.48 -0.7
746,643 + BACOVA_05247 0.48 -1.3
746,644 - BACOVA_05247 0.48 -0.1
746,666 - BACOVA_05247 0.66 +0.3
746,687 + BACOVA_05247 0.83 -0.2
746,725 - +0.9

Or see this region's nucleotide sequence