Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03490

Experiment: polygalacturonic 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03489 and BACOVA_03488 overlap by 14 nucleotidesBACOVA_03488 and BACOVA_03490 are separated by 139 nucleotidesBACOVA_03490 and BACOVA_03491 are separated by 49 nucleotides BACOVA_03489: BACOVA_03489 - transcriptional regulator, AraC family, at 242,765 to 245,296 _03489 BACOVA_03488: BACOVA_03488 - hypothetical protein, at 245,283 to 245,423 _03488 BACOVA_03490: BACOVA_03490 - hypothetical protein, at 245,563 to 247,563 _03490 BACOVA_03491: BACOVA_03491 - hypothetical protein, at 247,613 to 249,346 _03491 Position (kb) 245 246 247 248Strain fitness (log2 ratio) -2 -1 0 1 2at 244.572 kb on + strand, within BACOVA_03489at 244.572 kb on + strand, within BACOVA_03489at 244.572 kb on + strand, within BACOVA_03489at 244.573 kb on - strand, within BACOVA_03489at 244.573 kb on - strand, within BACOVA_03489at 244.649 kb on + strand, within BACOVA_03489at 244.650 kb on - strand, within BACOVA_03489at 244.656 kb on + strand, within BACOVA_03489at 244.657 kb on - strand, within BACOVA_03489at 244.657 kb on - strand, within BACOVA_03489at 244.731 kb on - strand, within BACOVA_03489at 244.738 kb on - strand, within BACOVA_03489at 244.738 kb on - strand, within BACOVA_03489at 244.757 kb on + strand, within BACOVA_03489at 244.757 kb on + strand, within BACOVA_03489at 244.793 kb on + strand, within BACOVA_03489at 244.794 kb on - strand, within BACOVA_03489at 244.798 kb on - strand, within BACOVA_03489at 244.798 kb on - strand, within BACOVA_03489at 244.842 kb on + strand, within BACOVA_03489at 244.842 kb on + strand, within BACOVA_03489at 244.843 kb on - strand, within BACOVA_03489at 244.860 kb on - strand, within BACOVA_03489at 244.861 kb on + strand, within BACOVA_03489at 244.877 kb on + strand, within BACOVA_03489at 244.878 kb on - strand, within BACOVA_03489at 244.898 kb on + strand, within BACOVA_03489at 244.898 kb on + strand, within BACOVA_03489at 244.898 kb on + strand, within BACOVA_03489at 244.899 kb on - strand, within BACOVA_03489at 244.899 kb on - strand, within BACOVA_03489at 244.899 kb on - strand, within BACOVA_03489at 244.955 kb on + strand, within BACOVA_03489at 244.983 kb on - strand, within BACOVA_03489at 244.995 kb on + strand, within BACOVA_03489at 245.008 kb on - strand, within BACOVA_03489at 245.036 kb on - strand, within BACOVA_03489at 245.048 kb on + strandat 245.090 kb on - strandat 245.092 kb on - strandat 245.092 kb on - strandat 245.108 kb on + strandat 245.109 kb on - strandat 245.109 kb on - strandat 245.112 kb on + strandat 245.112 kb on + strandat 245.113 kb on - strandat 245.183 kb on + strandat 245.184 kb on - strandat 245.215 kb on - strandat 245.215 kb on - strandat 245.280 kb on + strandat 245.280 kb on + strandat 245.281 kb on - strandat 245.282 kb on + strandat 245.282 kb on + strandat 245.283 kb on - strandat 245.313 kb on - strand, within BACOVA_03488at 245.331 kb on - strand, within BACOVA_03488at 245.344 kb on + strand, within BACOVA_03488at 245.421 kb on + strandat 245.422 kb on - strandat 245.431 kb on + strandat 245.432 kb on - strandat 245.436 kb on - strandat 245.493 kb on - strandat 245.493 kb on - strandat 245.547 kb on + strandat 245.547 kb on + strandat 245.548 kb on - strandat 245.548 kb on - strandat 245.553 kb on + strandat 245.553 kb on + strandat 245.553 kb on + strandat 245.553 kb on + strandat 245.554 kb on - strandat 245.554 kb on - strandat 245.559 kb on + strandat 245.559 kb on + strandat 245.560 kb on - strandat 245.609 kb on + strandat 245.610 kb on - strandat 245.642 kb on + strandat 245.681 kb on - strandat 245.683 kb on - strandat 245.683 kb on - strandat 245.746 kb on + strandat 245.748 kb on + strandat 245.750 kb on + strandat 245.750 kb on + strandat 245.751 kb on - strandat 245.754 kb on + strandat 245.754 kb on + strandat 245.755 kb on - strandat 245.755 kb on - strandat 245.759 kb on + strandat 245.760 kb on - strandat 245.859 kb on - strand, within BACOVA_03490at 245.886 kb on + strand, within BACOVA_03490at 245.927 kb on - strand, within BACOVA_03490at 245.927 kb on - strand, within BACOVA_03490at 245.927 kb on - strand, within BACOVA_03490at 245.927 kb on - strand, within BACOVA_03490at 245.929 kb on + strand, within BACOVA_03490at 245.930 kb on - strand, within BACOVA_03490at 245.930 kb on - strand, within BACOVA_03490at 245.935 kb on + strand, within BACOVA_03490at 245.945 kb on + strand, within BACOVA_03490at 245.946 kb on - strand, within BACOVA_03490at 245.949 kb on + strand, within BACOVA_03490at 245.949 kb on + strand, within BACOVA_03490at 245.950 kb on - strand, within BACOVA_03490at 245.974 kb on + strand, within BACOVA_03490at 245.975 kb on - strand, within BACOVA_03490at 246.079 kb on - strand, within BACOVA_03490at 246.105 kb on + strand, within BACOVA_03490at 246.105 kb on + strand, within BACOVA_03490at 246.105 kb on + strand, within BACOVA_03490at 246.168 kb on + strand, within BACOVA_03490at 246.169 kb on - strand, within BACOVA_03490at 246.214 kb on + strand, within BACOVA_03490at 246.295 kb on + strand, within BACOVA_03490at 246.319 kb on + strand, within BACOVA_03490at 246.320 kb on - strand, within BACOVA_03490at 246.368 kb on - strand, within BACOVA_03490at 246.408 kb on + strand, within BACOVA_03490at 246.408 kb on + strand, within BACOVA_03490at 246.408 kb on + strand, within BACOVA_03490at 246.409 kb on - strand, within BACOVA_03490at 246.413 kb on - strand, within BACOVA_03490at 246.447 kb on + strand, within BACOVA_03490at 246.448 kb on - strand, within BACOVA_03490at 246.551 kb on + strand, within BACOVA_03490at 246.655 kb on - strand, within BACOVA_03490at 246.656 kb on - strand, within BACOVA_03490at 246.699 kb on + strand, within BACOVA_03490at 246.723 kb on + strand, within BACOVA_03490at 246.788 kb on - strand, within BACOVA_03490at 246.788 kb on - strand, within BACOVA_03490at 246.789 kb on + strand, within BACOVA_03490at 246.790 kb on - strand, within BACOVA_03490at 246.792 kb on + strand, within BACOVA_03490at 246.793 kb on - strand, within BACOVA_03490at 246.919 kb on - strand, within BACOVA_03490at 246.931 kb on + strand, within BACOVA_03490at 246.931 kb on + strand, within BACOVA_03490at 246.936 kb on + strand, within BACOVA_03490at 246.937 kb on - strand, within BACOVA_03490at 247.033 kb on + strand, within BACOVA_03490at 247.034 kb on - strand, within BACOVA_03490at 247.152 kb on + strand, within BACOVA_03490at 247.153 kb on - strand, within BACOVA_03490at 247.153 kb on - strand, within BACOVA_03490at 247.196 kb on - strand, within BACOVA_03490at 247.239 kb on + strand, within BACOVA_03490at 247.239 kb on + strand, within BACOVA_03490at 247.248 kb on + strand, within BACOVA_03490at 247.258 kb on - strand, within BACOVA_03490at 247.324 kb on + strand, within BACOVA_03490at 247.326 kb on + strand, within BACOVA_03490at 247.326 kb on + strand, within BACOVA_03490at 247.327 kb on - strand, within BACOVA_03490at 247.327 kb on - strand, within BACOVA_03490at 247.327 kb on - strand, within BACOVA_03490at 247.327 kb on - strand, within BACOVA_03490at 247.327 kb on - strand, within BACOVA_03490at 247.332 kb on - strand, within BACOVA_03490at 247.355 kb on + strand, within BACOVA_03490at 247.377 kb on + strandat 247.409 kb on + strandat 247.412 kb on - strandat 247.454 kb on - strandat 247.503 kb on + strandat 247.562 kb on - strandat 247.603 kb on + strandat 247.604 kb on - strandat 247.604 kb on - strandat 247.649 kb on + strandat 247.649 kb on + strandat 247.653 kb on + strandat 247.653 kb on + strandat 247.654 kb on - strandat 247.654 kb on - strandat 247.654 kb on - strandat 247.657 kb on + strandat 247.793 kb on - strand, within BACOVA_03491at 247.800 kb on - strand, within BACOVA_03491at 247.800 kb on - strand, within BACOVA_03491at 247.800 kb on - strand, within BACOVA_03491at 247.801 kb on + strand, within BACOVA_03491at 247.801 kb on + strand, within BACOVA_03491at 247.801 kb on + strand, within BACOVA_03491at 247.826 kb on - strand, within BACOVA_03491at 247.830 kb on + strand, within BACOVA_03491at 247.831 kb on - strand, within BACOVA_03491at 247.844 kb on + strand, within BACOVA_03491at 247.875 kb on + strand, within BACOVA_03491at 247.876 kb on - strand, within BACOVA_03491at 247.876 kb on - strand, within BACOVA_03491at 247.929 kb on + strand, within BACOVA_03491at 247.948 kb on + strand, within BACOVA_03491at 248.017 kb on + strand, within BACOVA_03491at 248.017 kb on + strand, within BACOVA_03491at 248.018 kb on - strand, within BACOVA_03491at 248.020 kb on + strand, within BACOVA_03491at 248.021 kb on - strand, within BACOVA_03491at 248.108 kb on - strand, within BACOVA_03491at 248.111 kb on + strand, within BACOVA_03491at 248.112 kb on - strand, within BACOVA_03491at 248.112 kb on - strand, within BACOVA_03491at 248.146 kb on + strand, within BACOVA_03491at 248.190 kb on + strand, within BACOVA_03491at 248.191 kb on - strand, within BACOVA_03491at 248.191 kb on - strand, within BACOVA_03491at 248.214 kb on + strand, within BACOVA_03491at 248.247 kb on - strand, within BACOVA_03491at 248.267 kb on - strand, within BACOVA_03491at 248.282 kb on + strand, within BACOVA_03491at 248.330 kb on - strand, within BACOVA_03491at 248.387 kb on - strand, within BACOVA_03491at 248.407 kb on + strand, within BACOVA_03491at 248.493 kb on + strand, within BACOVA_03491at 248.532 kb on + strand, within BACOVA_03491at 248.532 kb on + strand, within BACOVA_03491at 248.532 kb on + strand, within BACOVA_03491at 248.532 kb on + strand, within BACOVA_03491at 248.533 kb on - strand, within BACOVA_03491

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Per-strain Table

Position Strand Gene LocusTag Fraction polygalacturonic 2.5 mg/ml (C)
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244,572 + BACOVA_03489 0.71 -0.2
244,572 + BACOVA_03489 0.71 -0.2
244,572 + BACOVA_03489 0.71 +0.6
244,573 - BACOVA_03489 0.71 +0.3
244,573 - BACOVA_03489 0.71 +0.8
244,649 + BACOVA_03489 0.74 +0.9
244,650 - BACOVA_03489 0.74 +0.3
244,656 + BACOVA_03489 0.75 -1.1
244,657 - BACOVA_03489 0.75 -0.7
244,657 - BACOVA_03489 0.75 -0.5
244,731 - BACOVA_03489 0.78 +0.5
244,738 - BACOVA_03489 0.78 -0.8
244,738 - BACOVA_03489 0.78 +0.0
244,757 + BACOVA_03489 0.79 +0.2
244,757 + BACOVA_03489 0.79 -0.3
244,793 + BACOVA_03489 0.80 +0.3
244,794 - BACOVA_03489 0.80 -0.4
244,798 - BACOVA_03489 0.80 +1.2
244,798 - BACOVA_03489 0.80 -0.7
244,842 + BACOVA_03489 0.82 -0.2
244,842 + BACOVA_03489 0.82 -0.3
244,843 - BACOVA_03489 0.82 +0.6
244,860 - BACOVA_03489 0.83 +0.2
244,861 + BACOVA_03489 0.83 +0.4
244,877 + BACOVA_03489 0.83 -0.1
244,878 - BACOVA_03489 0.83 -0.3
244,898 + BACOVA_03489 0.84 -0.4
244,898 + BACOVA_03489 0.84 -1.3
244,898 + BACOVA_03489 0.84 +1.1
244,899 - BACOVA_03489 0.84 -0.0
244,899 - BACOVA_03489 0.84 -0.9
244,899 - BACOVA_03489 0.84 +0.3
244,955 + BACOVA_03489 0.86 -0.3
244,983 - BACOVA_03489 0.88 -0.2
244,995 + BACOVA_03489 0.88 +0.3
245,008 - BACOVA_03489 0.89 -0.4
245,036 - BACOVA_03489 0.90 -1.3
245,048 + -0.2
245,090 - -1.1
245,092 - +1.7
245,092 - +0.9
245,108 + -1.2
245,109 - -2.0
245,109 - +1.2
245,112 + -1.8
245,112 + -0.7
245,113 - -1.0
245,183 + -1.7
245,184 - -0.4
245,215 - +0.7
245,215 - +0.1
245,280 + -0.7
245,280 + -0.4
245,281 - -1.2
245,282 + -0.2
245,282 + -0.1
245,283 - -0.3
245,313 - BACOVA_03488 0.21 -0.3
245,331 - BACOVA_03488 0.34 -0.3
245,344 + BACOVA_03488 0.43 -0.6
245,421 + +0.8
245,422 - -0.5
245,431 + +0.7
245,432 - +0.3
245,436 - +1.4
245,493 - -0.4
245,493 - +0.8
245,547 + -0.0
245,547 + +1.5
245,548 - +1.0
245,548 - -0.9
245,553 + +0.4
245,553 + +1.2
245,553 + -0.0
245,553 + -0.9
245,554 - +0.5
245,554 - -1.1
245,559 + +1.1
245,559 + -0.7
245,560 - +0.4
245,609 + -0.1
245,610 - -0.1
245,642 + +0.9
245,681 - +0.2
245,683 - -0.2
245,683 - +1.9
245,746 + +0.3
245,748 + -0.1
245,750 + -0.3
245,750 + +0.0
245,751 - -0.7
245,754 + -0.2
245,754 + +1.0
245,755 - +1.6
245,755 - +0.1
245,759 + +0.6
245,760 - +0.5
245,859 - BACOVA_03490 0.15 +0.5
245,886 + BACOVA_03490 0.16 -0.5
245,927 - BACOVA_03490 0.18 -0.4
245,927 - BACOVA_03490 0.18 +1.2
245,927 - BACOVA_03490 0.18 -0.5
245,927 - BACOVA_03490 0.18 +1.5
245,929 + BACOVA_03490 0.18 +0.4
245,930 - BACOVA_03490 0.18 -0.0
245,930 - BACOVA_03490 0.18 -1.3
245,935 + BACOVA_03490 0.19 -0.9
245,945 + BACOVA_03490 0.19 -0.1
245,946 - BACOVA_03490 0.19 +0.3
245,949 + BACOVA_03490 0.19 -1.1
245,949 + BACOVA_03490 0.19 -0.1
245,950 - BACOVA_03490 0.19 -0.2
245,974 + BACOVA_03490 0.21 +0.2
245,975 - BACOVA_03490 0.21 +0.3
246,079 - BACOVA_03490 0.26 +0.3
246,105 + BACOVA_03490 0.27 -2.0
246,105 + BACOVA_03490 0.27 -0.7
246,105 + BACOVA_03490 0.27 -0.4
246,168 + BACOVA_03490 0.30 -0.3
246,169 - BACOVA_03490 0.30 -1.9
246,214 + BACOVA_03490 0.33 +0.1
246,295 + BACOVA_03490 0.37 -0.4
246,319 + BACOVA_03490 0.38 -0.8
246,320 - BACOVA_03490 0.38 +0.0
246,368 - BACOVA_03490 0.40 -0.8
246,408 + BACOVA_03490 0.42 +0.0
246,408 + BACOVA_03490 0.42 -0.8
246,408 + BACOVA_03490 0.42 -0.6
246,409 - BACOVA_03490 0.42 +0.4
246,413 - BACOVA_03490 0.42 +0.5
246,447 + BACOVA_03490 0.44 -1.2
246,448 - BACOVA_03490 0.44 +0.5
246,551 + BACOVA_03490 0.49 -0.8
246,655 - BACOVA_03490 0.55 -1.2
246,656 - BACOVA_03490 0.55 -0.4
246,699 + BACOVA_03490 0.57 +0.2
246,723 + BACOVA_03490 0.58 -0.2
246,788 - BACOVA_03490 0.61 +0.2
246,788 - BACOVA_03490 0.61 -1.2
246,789 + BACOVA_03490 0.61 +0.2
246,790 - BACOVA_03490 0.61 -0.4
246,792 + BACOVA_03490 0.61 -0.2
246,793 - BACOVA_03490 0.61 +0.5
246,919 - BACOVA_03490 0.68 -0.2
246,931 + BACOVA_03490 0.68 -0.4
246,931 + BACOVA_03490 0.68 -1.7
246,936 + BACOVA_03490 0.69 +0.5
246,937 - BACOVA_03490 0.69 -0.1
247,033 + BACOVA_03490 0.73 +0.4
247,034 - BACOVA_03490 0.74 -0.1
247,152 + BACOVA_03490 0.79 -0.8
247,153 - BACOVA_03490 0.79 -0.0
247,153 - BACOVA_03490 0.79 +0.2
247,196 - BACOVA_03490 0.82 -0.2
247,239 + BACOVA_03490 0.84 -0.8
247,239 + BACOVA_03490 0.84 -0.0
247,248 + BACOVA_03490 0.84 +0.6
247,258 - BACOVA_03490 0.85 -0.1
247,324 + BACOVA_03490 0.88 -0.1
247,326 + BACOVA_03490 0.88 +1.6
247,326 + BACOVA_03490 0.88 -1.3
247,327 - BACOVA_03490 0.88 -1.0
247,327 - BACOVA_03490 0.88 +0.0
247,327 - BACOVA_03490 0.88 +0.8
247,327 - BACOVA_03490 0.88 -1.7
247,327 - BACOVA_03490 0.88 +0.2
247,332 - BACOVA_03490 0.88 -0.4
247,355 + BACOVA_03490 0.90 -1.4
247,377 + +0.3
247,409 + -1.2
247,412 - -0.8
247,454 - +0.8
247,503 + -0.1
247,562 - -0.3
247,603 + -2.1
247,604 - +0.5
247,604 - +1.2
247,649 + -0.1
247,649 + -0.8
247,653 + -0.7
247,653 + -1.5
247,654 - -0.7
247,654 - +0.3
247,654 - -0.4
247,657 + +0.6
247,793 - BACOVA_03491 0.10 +0.4
247,800 - BACOVA_03491 0.11 -0.7
247,800 - BACOVA_03491 0.11 +0.2
247,800 - BACOVA_03491 0.11 +1.0
247,801 + BACOVA_03491 0.11 +0.7
247,801 + BACOVA_03491 0.11 +0.8
247,801 + BACOVA_03491 0.11 -0.6
247,826 - BACOVA_03491 0.12 +0.3
247,830 + BACOVA_03491 0.13 -0.2
247,831 - BACOVA_03491 0.13 -0.4
247,844 + BACOVA_03491 0.13 -0.0
247,875 + BACOVA_03491 0.15 -0.6
247,876 - BACOVA_03491 0.15 -0.7
247,876 - BACOVA_03491 0.15 +1.1
247,929 + BACOVA_03491 0.18 +0.6
247,948 + BACOVA_03491 0.19 -0.1
248,017 + BACOVA_03491 0.23 -0.3
248,017 + BACOVA_03491 0.23 -0.1
248,018 - BACOVA_03491 0.23 +0.1
248,020 + BACOVA_03491 0.23 +1.3
248,021 - BACOVA_03491 0.24 +0.2
248,108 - BACOVA_03491 0.29 +1.1
248,111 + BACOVA_03491 0.29 +0.0
248,112 - BACOVA_03491 0.29 -0.7
248,112 - BACOVA_03491 0.29 -0.1
248,146 + BACOVA_03491 0.31 +2.4
248,190 + BACOVA_03491 0.33 -0.1
248,191 - BACOVA_03491 0.33 +0.7
248,191 - BACOVA_03491 0.33 -0.7
248,214 + BACOVA_03491 0.35 -1.9
248,247 - BACOVA_03491 0.37 +0.1
248,267 - BACOVA_03491 0.38 +0.4
248,282 + BACOVA_03491 0.39 +0.6
248,330 - BACOVA_03491 0.41 -1.9
248,387 - BACOVA_03491 0.45 -0.1
248,407 + BACOVA_03491 0.46 -2.0
248,493 + BACOVA_03491 0.51 -0.5
248,532 + BACOVA_03491 0.53 -0.4
248,532 + BACOVA_03491 0.53 -0.2
248,532 + BACOVA_03491 0.53 +0.5
248,532 + BACOVA_03491 0.53 +1.5
248,533 - BACOVA_03491 0.53 +0.1

Or see this region's nucleotide sequence