Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03120

Experiment: polygalacturonic 2.5 mg/ml (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_03119 and BACOVA_03120 are separated by 72 nucleotidesBACOVA_03120 and BACOVA_03121 are separated by 20 nucleotides BACOVA_03119: BACOVA_03119 - hypothetical protein, at 207,084 to 208,469 _03119 BACOVA_03120: BACOVA_03120 - bacterial alpha-L-rhamnosidase, at 208,542 to 210,359 _03120 BACOVA_03121: BACOVA_03121 - glycosyl hydrolase family 20, catalytic domain protein, at 210,380 to 212,731 _03121 Position (kb) 208 209 210 211Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 207.596 kb on - strand, within BACOVA_03119at 207.625 kb on - strand, within BACOVA_03119at 207.741 kb on - strand, within BACOVA_03119at 207.768 kb on + strand, within BACOVA_03119at 207.769 kb on - strand, within BACOVA_03119at 207.896 kb on + strand, within BACOVA_03119at 207.959 kb on + strand, within BACOVA_03119at 207.960 kb on - strand, within BACOVA_03119at 208.028 kb on + strand, within BACOVA_03119at 208.047 kb on + strand, within BACOVA_03119at 208.070 kb on + strand, within BACOVA_03119at 208.071 kb on - strand, within BACOVA_03119at 208.117 kb on - strand, within BACOVA_03119at 208.120 kb on - strand, within BACOVA_03119at 208.120 kb on - strand, within BACOVA_03119at 208.127 kb on + strand, within BACOVA_03119at 208.128 kb on - strand, within BACOVA_03119at 208.167 kb on - strand, within BACOVA_03119at 208.240 kb on - strand, within BACOVA_03119at 208.252 kb on - strand, within BACOVA_03119at 208.301 kb on + strand, within BACOVA_03119at 208.344 kb on - strandat 208.414 kb on - strandat 208.443 kb on + strandat 208.476 kb on - strandat 208.484 kb on + strandat 208.496 kb on + strandat 208.496 kb on + strandat 208.518 kb on + strandat 208.519 kb on - strandat 208.519 kb on - strandat 208.528 kb on - strandat 208.587 kb on + strandat 208.588 kb on - strandat 208.649 kb on + strandat 208.686 kb on + strandat 208.688 kb on + strandat 208.688 kb on + strandat 208.688 kb on + strandat 208.688 kb on + strandat 208.689 kb on - strandat 208.692 kb on + strandat 208.801 kb on + strand, within BACOVA_03120at 208.801 kb on + strand, within BACOVA_03120at 208.801 kb on + strand, within BACOVA_03120at 208.801 kb on + strand, within BACOVA_03120at 208.801 kb on + strand, within BACOVA_03120at 208.802 kb on - strand, within BACOVA_03120at 208.802 kb on - strand, within BACOVA_03120at 208.802 kb on - strand, within BACOVA_03120at 208.802 kb on - strand, within BACOVA_03120at 208.830 kb on - strand, within BACOVA_03120at 208.852 kb on - strand, within BACOVA_03120at 208.852 kb on - strand, within BACOVA_03120at 208.973 kb on - strand, within BACOVA_03120at 209.003 kb on + strand, within BACOVA_03120at 209.003 kb on + strand, within BACOVA_03120at 209.004 kb on - strand, within BACOVA_03120at 209.004 kb on - strand, within BACOVA_03120at 209.005 kb on + strand, within BACOVA_03120at 209.005 kb on + strand, within BACOVA_03120at 209.008 kb on + strand, within BACOVA_03120at 209.043 kb on + strand, within BACOVA_03120at 209.091 kb on - strand, within BACOVA_03120at 209.152 kb on - strand, within BACOVA_03120at 209.217 kb on - strand, within BACOVA_03120at 209.239 kb on - strand, within BACOVA_03120at 209.318 kb on + strand, within BACOVA_03120at 209.318 kb on + strand, within BACOVA_03120at 209.389 kb on - strand, within BACOVA_03120at 209.401 kb on - strand, within BACOVA_03120at 209.409 kb on - strand, within BACOVA_03120at 209.409 kb on - strand, within BACOVA_03120at 209.409 kb on - strand, within BACOVA_03120at 209.411 kb on + strand, within BACOVA_03120at 209.411 kb on + strand, within BACOVA_03120at 209.412 kb on - strand, within BACOVA_03120at 209.414 kb on - strand, within BACOVA_03120at 209.452 kb on + strand, within BACOVA_03120at 209.467 kb on + strand, within BACOVA_03120at 209.467 kb on + strand, within BACOVA_03120at 209.494 kb on + strand, within BACOVA_03120at 209.494 kb on + strand, within BACOVA_03120at 209.579 kb on - strand, within BACOVA_03120at 209.595 kb on + strand, within BACOVA_03120at 209.596 kb on - strand, within BACOVA_03120at 209.596 kb on - strand, within BACOVA_03120at 209.625 kb on + strand, within BACOVA_03120at 209.625 kb on + strand, within BACOVA_03120at 209.649 kb on - strand, within BACOVA_03120at 209.676 kb on - strand, within BACOVA_03120at 209.692 kb on + strand, within BACOVA_03120at 209.693 kb on - strand, within BACOVA_03120at 209.709 kb on + strand, within BACOVA_03120at 209.709 kb on + strand, within BACOVA_03120at 209.710 kb on - strand, within BACOVA_03120at 209.717 kb on + strand, within BACOVA_03120at 209.732 kb on + strand, within BACOVA_03120at 209.772 kb on - strand, within BACOVA_03120at 209.792 kb on + strand, within BACOVA_03120at 209.802 kb on + strand, within BACOVA_03120at 209.802 kb on + strand, within BACOVA_03120at 209.802 kb on + strand, within BACOVA_03120at 209.803 kb on - strand, within BACOVA_03120at 209.820 kb on + strand, within BACOVA_03120at 209.864 kb on - strand, within BACOVA_03120at 209.903 kb on + strand, within BACOVA_03120at 209.903 kb on + strand, within BACOVA_03120at 209.905 kb on - strand, within BACOVA_03120at 209.997 kb on - strand, within BACOVA_03120at 210.065 kb on + strand, within BACOVA_03120at 210.093 kb on + strand, within BACOVA_03120at 210.094 kb on - strand, within BACOVA_03120at 210.094 kb on - strand, within BACOVA_03120at 210.103 kb on + strand, within BACOVA_03120at 210.103 kb on + strand, within BACOVA_03120at 210.104 kb on - strand, within BACOVA_03120at 210.150 kb on - strand, within BACOVA_03120at 210.153 kb on + strand, within BACOVA_03120at 210.154 kb on - strand, within BACOVA_03120at 210.154 kb on - strand, within BACOVA_03120at 210.164 kb on - strand, within BACOVA_03120at 210.170 kb on - strand, within BACOVA_03120at 210.173 kb on - strand, within BACOVA_03120at 210.207 kb on + strandat 210.269 kb on + strandat 210.269 kb on + strandat 210.269 kb on + strandat 210.270 kb on - strandat 210.275 kb on - strandat 210.275 kb on - strandat 210.278 kb on + strandat 210.318 kb on + strandat 210.336 kb on + strandat 210.336 kb on + strandat 210.338 kb on + strandat 210.342 kb on + strandat 210.368 kb on - strandat 210.382 kb on - strandat 210.390 kb on + strandat 210.390 kb on + strandat 210.390 kb on + strandat 210.390 kb on + strandat 210.545 kb on + strandat 210.569 kb on + strandat 210.574 kb on + strandat 210.574 kb on + strandat 210.575 kb on - strandat 210.607 kb on - strandat 210.624 kb on - strand, within BACOVA_03121at 210.668 kb on + strand, within BACOVA_03121at 210.669 kb on - strand, within BACOVA_03121at 210.681 kb on + strand, within BACOVA_03121at 210.683 kb on - strand, within BACOVA_03121at 210.685 kb on - strand, within BACOVA_03121at 210.687 kb on - strand, within BACOVA_03121at 210.688 kb on + strand, within BACOVA_03121at 210.688 kb on + strand, within BACOVA_03121at 210.688 kb on + strand, within BACOVA_03121at 210.689 kb on - strand, within BACOVA_03121at 210.689 kb on - strand, within BACOVA_03121at 210.759 kb on + strand, within BACOVA_03121at 210.766 kb on + strand, within BACOVA_03121at 210.766 kb on + strand, within BACOVA_03121at 210.766 kb on + strand, within BACOVA_03121at 210.767 kb on - strand, within BACOVA_03121at 210.767 kb on - strand, within BACOVA_03121at 210.767 kb on - strand, within BACOVA_03121at 210.800 kb on - strand, within BACOVA_03121at 210.803 kb on + strand, within BACOVA_03121at 210.816 kb on + strand, within BACOVA_03121at 210.816 kb on + strand, within BACOVA_03121at 210.833 kb on - strand, within BACOVA_03121at 210.834 kb on + strand, within BACOVA_03121at 210.835 kb on - strand, within BACOVA_03121at 210.914 kb on + strand, within BACOVA_03121at 210.916 kb on + strand, within BACOVA_03121at 210.916 kb on + strand, within BACOVA_03121at 210.916 kb on + strand, within BACOVA_03121at 210.916 kb on + strand, within BACOVA_03121at 210.916 kb on + strand, within BACOVA_03121at 210.917 kb on - strand, within BACOVA_03121at 210.917 kb on - strand, within BACOVA_03121at 210.928 kb on - strand, within BACOVA_03121at 210.967 kb on + strand, within BACOVA_03121at 211.007 kb on + strand, within BACOVA_03121at 211.008 kb on - strand, within BACOVA_03121at 211.012 kb on + strand, within BACOVA_03121at 211.031 kb on - strand, within BACOVA_03121at 211.073 kb on + strand, within BACOVA_03121at 211.195 kb on + strand, within BACOVA_03121at 211.197 kb on + strand, within BACOVA_03121at 211.198 kb on - strand, within BACOVA_03121at 211.198 kb on - strand, within BACOVA_03121at 211.198 kb on - strand, within BACOVA_03121at 211.198 kb on - strand, within BACOVA_03121at 211.248 kb on - strand, within BACOVA_03121at 211.253 kb on + strand, within BACOVA_03121at 211.254 kb on - strand, within BACOVA_03121at 211.298 kb on + strand, within BACOVA_03121at 211.299 kb on - strand, within BACOVA_03121at 211.332 kb on - strand, within BACOVA_03121at 211.342 kb on - strand, within BACOVA_03121at 211.342 kb on - strand, within BACOVA_03121

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction polygalacturonic 2.5 mg/ml (C)
remove
207,596 - BACOVA_03119 0.37 -1.1
207,625 - BACOVA_03119 0.39 -0.9
207,741 - BACOVA_03119 0.47 +0.1
207,768 + BACOVA_03119 0.49 -0.6
207,769 - BACOVA_03119 0.49 -3.1
207,896 + BACOVA_03119 0.59 -0.4
207,959 + BACOVA_03119 0.63 -1.1
207,960 - BACOVA_03119 0.63 -0.3
208,028 + BACOVA_03119 0.68 +0.5
208,047 + BACOVA_03119 0.69 -0.5
208,070 + BACOVA_03119 0.71 +1.3
208,071 - BACOVA_03119 0.71 +0.4
208,117 - BACOVA_03119 0.75 -0.0
208,120 - BACOVA_03119 0.75 -1.9
208,120 - BACOVA_03119 0.75 +0.9
208,127 + BACOVA_03119 0.75 +0.7
208,128 - BACOVA_03119 0.75 +0.1
208,167 - BACOVA_03119 0.78 -0.5
208,240 - BACOVA_03119 0.83 +1.2
208,252 - BACOVA_03119 0.84 -0.5
208,301 + BACOVA_03119 0.88 +0.8
208,344 - +0.1
208,414 - -0.8
208,443 + +0.1
208,476 - -0.2
208,484 + -0.1
208,496 + -0.9
208,496 + +0.7
208,518 + -0.9
208,519 - -0.5
208,519 - +0.4
208,528 - -2.2
208,587 + +0.1
208,588 - +0.2
208,649 + -0.0
208,686 + -0.1
208,688 + -0.6
208,688 + +0.4
208,688 + -0.3
208,688 + +0.5
208,689 - -0.6
208,692 + -1.5
208,801 + BACOVA_03120 0.14 +0.0
208,801 + BACOVA_03120 0.14 -0.6
208,801 + BACOVA_03120 0.14 -0.5
208,801 + BACOVA_03120 0.14 +1.1
208,801 + BACOVA_03120 0.14 -0.8
208,802 - BACOVA_03120 0.14 -1.5
208,802 - BACOVA_03120 0.14 +0.8
208,802 - BACOVA_03120 0.14 -0.9
208,802 - BACOVA_03120 0.14 +0.3
208,830 - BACOVA_03120 0.16 -0.5
208,852 - BACOVA_03120 0.17 -0.5
208,852 - BACOVA_03120 0.17 -1.2
208,973 - BACOVA_03120 0.24 -0.6
209,003 + BACOVA_03120 0.25 -0.3
209,003 + BACOVA_03120 0.25 -0.5
209,004 - BACOVA_03120 0.25 -2.2
209,004 - BACOVA_03120 0.25 +1.1
209,005 + BACOVA_03120 0.25 -0.7
209,005 + BACOVA_03120 0.25 +2.7
209,008 + BACOVA_03120 0.26 -0.6
209,043 + BACOVA_03120 0.28 -0.6
209,091 - BACOVA_03120 0.30 -0.8
209,152 - BACOVA_03120 0.34 +0.0
209,217 - BACOVA_03120 0.37 -0.5
209,239 - BACOVA_03120 0.38 -1.2
209,318 + BACOVA_03120 0.43 +0.6
209,318 + BACOVA_03120 0.43 -0.5
209,389 - BACOVA_03120 0.47 -0.9
209,401 - BACOVA_03120 0.47 +0.3
209,409 - BACOVA_03120 0.48 -1.2
209,409 - BACOVA_03120 0.48 -1.5
209,409 - BACOVA_03120 0.48 +0.1
209,411 + BACOVA_03120 0.48 -1.9
209,411 + BACOVA_03120 0.48 -1.3
209,412 - BACOVA_03120 0.48 +1.5
209,414 - BACOVA_03120 0.48 -0.2
209,452 + BACOVA_03120 0.50 -0.2
209,467 + BACOVA_03120 0.51 -0.8
209,467 + BACOVA_03120 0.51 +0.1
209,494 + BACOVA_03120 0.52 +1.1
209,494 + BACOVA_03120 0.52 -0.5
209,579 - BACOVA_03120 0.57 -0.5
209,595 + BACOVA_03120 0.58 -0.7
209,596 - BACOVA_03120 0.58 -1.9
209,596 - BACOVA_03120 0.58 -1.0
209,625 + BACOVA_03120 0.60 +0.3
209,625 + BACOVA_03120 0.60 -0.7
209,649 - BACOVA_03120 0.61 -0.3
209,676 - BACOVA_03120 0.62 +0.8
209,692 + BACOVA_03120 0.63 +0.4
209,693 - BACOVA_03120 0.63 -2.0
209,709 + BACOVA_03120 0.64 +0.3
209,709 + BACOVA_03120 0.64 -0.6
209,710 - BACOVA_03120 0.64 +0.7
209,717 + BACOVA_03120 0.65 -0.4
209,732 + BACOVA_03120 0.65 +0.1
209,772 - BACOVA_03120 0.68 +0.4
209,792 + BACOVA_03120 0.69 -0.4
209,802 + BACOVA_03120 0.69 +0.8
209,802 + BACOVA_03120 0.69 -0.4
209,802 + BACOVA_03120 0.69 +0.8
209,803 - BACOVA_03120 0.69 -0.7
209,820 + BACOVA_03120 0.70 -0.5
209,864 - BACOVA_03120 0.73 +0.1
209,903 + BACOVA_03120 0.75 +0.3
209,903 + BACOVA_03120 0.75 +0.2
209,905 - BACOVA_03120 0.75 +0.5
209,997 - BACOVA_03120 0.80 -1.5
210,065 + BACOVA_03120 0.84 +0.0
210,093 + BACOVA_03120 0.85 +0.4
210,094 - BACOVA_03120 0.85 +0.1
210,094 - BACOVA_03120 0.85 +1.3
210,103 + BACOVA_03120 0.86 -1.2
210,103 + BACOVA_03120 0.86 -0.8
210,104 - BACOVA_03120 0.86 -1.0
210,150 - BACOVA_03120 0.88 +0.3
210,153 + BACOVA_03120 0.89 +0.5
210,154 - BACOVA_03120 0.89 -0.9
210,154 - BACOVA_03120 0.89 -1.4
210,164 - BACOVA_03120 0.89 -0.5
210,170 - BACOVA_03120 0.90 -1.6
210,173 - BACOVA_03120 0.90 +0.3
210,207 + -0.3
210,269 + +1.3
210,269 + +0.3
210,269 + +0.8
210,270 - +0.3
210,275 - +1.8
210,275 - +2.1
210,278 + +0.4
210,318 + -0.2
210,336 + -0.3
210,336 + +0.4
210,338 + +0.7
210,342 + +0.4
210,368 - -0.1
210,382 - +0.1
210,390 + -0.6
210,390 + -0.9
210,390 + -0.3
210,390 + +0.2
210,545 + -0.2
210,569 + -0.2
210,574 + -0.9
210,574 + +1.3
210,575 - +0.8
210,607 - -0.5
210,624 - BACOVA_03121 0.10 -1.2
210,668 + BACOVA_03121 0.12 -0.2
210,669 - BACOVA_03121 0.12 +0.5
210,681 + BACOVA_03121 0.13 -0.2
210,683 - BACOVA_03121 0.13 -0.5
210,685 - BACOVA_03121 0.13 -1.2
210,687 - BACOVA_03121 0.13 -0.2
210,688 + BACOVA_03121 0.13 +0.5
210,688 + BACOVA_03121 0.13 +0.6
210,688 + BACOVA_03121 0.13 -0.1
210,689 - BACOVA_03121 0.13 +0.3
210,689 - BACOVA_03121 0.13 +0.7
210,759 + BACOVA_03121 0.16 +1.1
210,766 + BACOVA_03121 0.16 +0.1
210,766 + BACOVA_03121 0.16 -1.1
210,766 + BACOVA_03121 0.16 +0.6
210,767 - BACOVA_03121 0.16 -0.4
210,767 - BACOVA_03121 0.16 -0.5
210,767 - BACOVA_03121 0.16 -0.6
210,800 - BACOVA_03121 0.18 +1.1
210,803 + BACOVA_03121 0.18 -1.5
210,816 + BACOVA_03121 0.19 +0.5
210,816 + BACOVA_03121 0.19 -0.3
210,833 - BACOVA_03121 0.19 +1.3
210,834 + BACOVA_03121 0.19 +0.6
210,835 - BACOVA_03121 0.19 -1.1
210,914 + BACOVA_03121 0.23 +0.5
210,916 + BACOVA_03121 0.23 +0.9
210,916 + BACOVA_03121 0.23 -0.7
210,916 + BACOVA_03121 0.23 +0.5
210,916 + BACOVA_03121 0.23 -0.6
210,916 + BACOVA_03121 0.23 -3.0
210,917 - BACOVA_03121 0.23 -0.5
210,917 - BACOVA_03121 0.23 -2.2
210,928 - BACOVA_03121 0.23 -0.3
210,967 + BACOVA_03121 0.25 +0.0
211,007 + BACOVA_03121 0.27 -1.6
211,008 - BACOVA_03121 0.27 +2.0
211,012 + BACOVA_03121 0.27 +0.0
211,031 - BACOVA_03121 0.28 -0.4
211,073 + BACOVA_03121 0.29 -0.5
211,195 + BACOVA_03121 0.35 -0.2
211,197 + BACOVA_03121 0.35 +1.1
211,198 - BACOVA_03121 0.35 +0.4
211,198 - BACOVA_03121 0.35 -0.9
211,198 - BACOVA_03121 0.35 -0.3
211,198 - BACOVA_03121 0.35 -0.4
211,248 - BACOVA_03121 0.37 -0.6
211,253 + BACOVA_03121 0.37 -0.0
211,254 - BACOVA_03121 0.37 -0.5
211,298 + BACOVA_03121 0.39 -0.2
211,299 - BACOVA_03121 0.39 -0.4
211,332 - BACOVA_03121 0.40 +0.2
211,342 - BACOVA_03121 0.41 -1.6
211,342 - BACOVA_03121 0.41 +0.3

Or see this region's nucleotide sequence