Experiment: polygalacturonic 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03114 and BACOVA_03115 are separated by 88 nucleotides BACOVA_03115 and BACOVA_03116 are separated by 2 nucleotides BACOVA_03116 and BACOVA_03117 are separated by 12 nucleotides BACOVA_03117 and BACOVA_03118 are separated by 218 nucleotides
BACOVA_03114: BACOVA_03114 - putative CDP-diacylglycerol-serine O-phosphatidyltransferase, at 198,096 to 198,725
_03114
BACOVA_03115: BACOVA_03115 - phosphatidylserine decarboxylase, at 198,814 to 199,500
_03115
BACOVA_03116: BACOVA_03116 - hypothetical protein, at 199,503 to 199,649
_03116
BACOVA_03117: BACOVA_03117 - DNA polymerase III, alpha subunit, at 199,662 to 203,468
_03117
BACOVA_03118: BACOVA_03118 - glycosyl hydrolase family 2, sugar binding domain protein, at 203,687 to 206,929
_03118
Position (kb) 199
200
201
202
203
204 Strain fitness (log2 ratio) -2
-1
0
1 at 199.569 kb on - strand, within BACOVA_03116 at 199.569 kb on - strand, within BACOVA_03116 at 199.634 kb on + strand, within BACOVA_03116 at 199.651 kb on + strand at 203.493 kb on + strand at 203.494 kb on - strand at 203.500 kb on + strand at 203.512 kb on + strand at 203.518 kb on + strand at 203.542 kb on + strand at 203.542 kb on + strand at 203.543 kb on - strand at 203.544 kb on + strand at 203.598 kb on + strand at 203.599 kb on - strand at 203.609 kb on + strand at 203.609 kb on + strand at 203.609 kb on + strand at 203.610 kb on - strand at 203.628 kb on - strand at 203.668 kb on - strand at 203.672 kb on + strand at 203.721 kb on - strand at 203.721 kb on - strand at 203.767 kb on + strand at 203.768 kb on - strand at 203.768 kb on - strand at 203.798 kb on + strand at 203.806 kb on + strand at 203.833 kb on + strand at 203.833 kb on + strand at 203.833 kb on + strand at 203.833 kb on + strand at 203.838 kb on - strand at 203.838 kb on - strand at 203.912 kb on + strand at 203.913 kb on - strand at 203.925 kb on + strand at 203.926 kb on - strand at 203.926 kb on - strand at 203.926 kb on - strand at 203.926 kb on - strand at 203.926 kb on - strand at 203.981 kb on + strand at 203.997 kb on - strand at 203.999 kb on + strand at 203.999 kb on + strand at 203.999 kb on + strand at 203.999 kb on + strand at 204.001 kb on + strand at 204.002 kb on - strand at 204.046 kb on - strand, within BACOVA_03118 at 204.046 kb on - strand, within BACOVA_03118 at 204.068 kb on - strand, within BACOVA_03118 at 204.074 kb on - strand, within BACOVA_03118 at 204.130 kb on + strand, within BACOVA_03118 at 204.251 kb on - strand, within BACOVA_03118 at 204.281 kb on + strand, within BACOVA_03118 at 204.315 kb on - strand, within BACOVA_03118 at 204.368 kb on + strand, within BACOVA_03118 at 204.456 kb on + strand, within BACOVA_03118 at 204.457 kb on - strand, within BACOVA_03118 at 204.458 kb on + strand, within BACOVA_03118 at 204.462 kb on - strand, within BACOVA_03118
Per-strain Table
Position Strand Gene LocusTag Fraction polygalacturonic 2.5 mg/ml (C) remove 199,569 - BACOVA_03116 0.45 -1.2 199,569 - BACOVA_03116 0.45 +0.1 199,634 + BACOVA_03116 0.89 -0.2 199,651 + -0.0 203,493 + -0.7 203,494 - +0.5 203,500 + -0.4 203,512 + +0.4 203,518 + +1.3 203,542 + -0.8 203,542 + -2.1 203,543 - +0.1 203,544 + +0.7 203,598 + +0.2 203,599 - +0.3 203,609 + +1.0 203,609 + -2.1 203,609 + +0.3 203,610 - +0.7 203,628 - +0.0 203,668 - -0.2 203,672 + -1.1 203,721 - +1.0 203,721 - +0.8 203,767 + -1.2 203,768 - -0.6 203,768 - +0.6 203,798 + -0.3 203,806 + -1.2 203,833 + -0.4 203,833 + +0.3 203,833 + -0.9 203,833 + -0.1 203,838 - -1.0 203,838 - -0.8 203,912 + +0.7 203,913 - +0.9 203,925 + +0.4 203,926 - -0.3 203,926 - -1.8 203,926 - -0.0 203,926 - +0.4 203,926 - +0.0 203,981 + +0.4 203,997 - -1.0 203,999 + -0.5 203,999 + -0.2 203,999 + -0.5 203,999 + -2.5 204,001 + +0.7 204,002 - +0.3 204,046 - BACOVA_03118 0.11 -0.6 204,046 - BACOVA_03118 0.11 +1.3 204,068 - BACOVA_03118 0.12 -1.1 204,074 - BACOVA_03118 0.12 -0.5 204,130 + BACOVA_03118 0.14 +0.7 204,251 - BACOVA_03118 0.17 +0.3 204,281 + BACOVA_03118 0.18 -0.1 204,315 - BACOVA_03118 0.19 -0.6 204,368 + BACOVA_03118 0.21 +0.0 204,456 + BACOVA_03118 0.24 -0.4 204,457 - BACOVA_03118 0.24 -1.3 204,458 + BACOVA_03118 0.24 -0.1 204,462 - BACOVA_03118 0.24 -0.9
Or see this region's nucleotide sequence