Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02468

Experiment: polygalacturonic 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02467 and BACOVA_02468 are separated by 0 nucleotidesBACOVA_02468 and BACOVA_02469 are separated by 74 nucleotides BACOVA_02467: BACOVA_02467 - nitroreductase family protein, at 229,902 to 230,888 _02467 BACOVA_02468: BACOVA_02468 - hypothetical protein, at 230,889 to 231,926 _02468 BACOVA_02469: BACOVA_02469 - glycosyltransferase, group 1 family protein, at 232,001 to 233,044 _02469 Position (kb) 230 231 232Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 229.925 kb on + strandat 229.926 kb on - strandat 229.929 kb on - strandat 229.929 kb on - strandat 229.929 kb on - strandat 229.948 kb on + strandat 229.949 kb on - strandat 229.949 kb on - strandat 229.961 kb on + strandat 229.961 kb on + strandat 229.961 kb on + strandat 229.961 kb on + strandat 229.966 kb on - strandat 230.030 kb on + strand, within BACOVA_02467at 230.031 kb on - strand, within BACOVA_02467at 230.031 kb on - strand, within BACOVA_02467at 230.033 kb on - strand, within BACOVA_02467at 230.035 kb on - strand, within BACOVA_02467at 230.035 kb on - strand, within BACOVA_02467at 230.036 kb on + strand, within BACOVA_02467at 230.036 kb on + strand, within BACOVA_02467at 230.066 kb on - strand, within BACOVA_02467at 230.066 kb on - strand, within BACOVA_02467at 230.066 kb on - strand, within BACOVA_02467at 230.228 kb on + strand, within BACOVA_02467at 230.237 kb on + strand, within BACOVA_02467at 230.249 kb on + strand, within BACOVA_02467at 230.259 kb on - strand, within BACOVA_02467at 230.266 kb on + strand, within BACOVA_02467at 230.292 kb on + strand, within BACOVA_02467at 230.293 kb on - strand, within BACOVA_02467at 230.293 kb on - strand, within BACOVA_02467at 230.300 kb on - strand, within BACOVA_02467at 230.326 kb on - strand, within BACOVA_02467at 230.333 kb on + strand, within BACOVA_02467at 230.338 kb on + strand, within BACOVA_02467at 230.339 kb on - strand, within BACOVA_02467at 230.339 kb on - strand, within BACOVA_02467at 230.355 kb on - strand, within BACOVA_02467at 230.426 kb on - strand, within BACOVA_02467at 230.426 kb on - strand, within BACOVA_02467at 230.426 kb on - strand, within BACOVA_02467at 230.426 kb on - strand, within BACOVA_02467at 230.430 kb on - strand, within BACOVA_02467at 230.430 kb on - strand, within BACOVA_02467at 230.430 kb on - strand, within BACOVA_02467at 230.431 kb on + strand, within BACOVA_02467at 230.452 kb on + strand, within BACOVA_02467at 230.484 kb on - strand, within BACOVA_02467at 230.487 kb on - strand, within BACOVA_02467at 230.549 kb on - strand, within BACOVA_02467at 230.549 kb on - strand, within BACOVA_02467at 230.598 kb on - strand, within BACOVA_02467at 230.598 kb on - strand, within BACOVA_02467at 230.599 kb on + strand, within BACOVA_02467at 230.600 kb on - strand, within BACOVA_02467at 230.620 kb on - strand, within BACOVA_02467at 230.695 kb on - strand, within BACOVA_02467at 230.709 kb on - strand, within BACOVA_02467at 230.709 kb on - strand, within BACOVA_02467at 230.772 kb on - strand, within BACOVA_02467at 230.820 kb on - strandat 230.854 kb on - strandat 230.908 kb on + strandat 230.914 kb on - strandat 230.953 kb on - strandat 230.981 kb on - strandat 231.072 kb on - strand, within BACOVA_02468at 231.078 kb on - strand, within BACOVA_02468at 231.078 kb on - strand, within BACOVA_02468at 231.120 kb on - strand, within BACOVA_02468at 231.120 kb on - strand, within BACOVA_02468at 231.140 kb on - strand, within BACOVA_02468at 231.151 kb on - strand, within BACOVA_02468at 231.161 kb on - strand, within BACOVA_02468at 231.206 kb on + strand, within BACOVA_02468at 231.219 kb on + strand, within BACOVA_02468at 231.220 kb on - strand, within BACOVA_02468at 231.220 kb on - strand, within BACOVA_02468at 231.262 kb on - strand, within BACOVA_02468at 231.323 kb on - strand, within BACOVA_02468at 231.326 kb on + strand, within BACOVA_02468at 231.353 kb on - strand, within BACOVA_02468at 231.353 kb on - strand, within BACOVA_02468at 231.379 kb on - strand, within BACOVA_02468at 231.422 kb on - strand, within BACOVA_02468at 231.429 kb on - strand, within BACOVA_02468at 231.429 kb on - strand, within BACOVA_02468at 231.437 kb on - strand, within BACOVA_02468at 231.437 kb on - strand, within BACOVA_02468at 231.437 kb on - strand, within BACOVA_02468at 231.437 kb on - strand, within BACOVA_02468at 231.467 kb on + strand, within BACOVA_02468at 231.513 kb on - strand, within BACOVA_02468at 231.584 kb on + strand, within BACOVA_02468at 231.585 kb on - strand, within BACOVA_02468at 231.591 kb on - strand, within BACOVA_02468at 231.591 kb on - strand, within BACOVA_02468at 231.613 kb on - strand, within BACOVA_02468at 231.638 kb on + strand, within BACOVA_02468at 231.638 kb on + strand, within BACOVA_02468at 231.639 kb on - strand, within BACOVA_02468at 231.643 kb on - strand, within BACOVA_02468at 231.689 kb on - strand, within BACOVA_02468at 231.735 kb on - strand, within BACOVA_02468at 231.735 kb on - strand, within BACOVA_02468at 231.819 kb on - strand, within BACOVA_02468at 231.823 kb on - strandat 231.848 kb on - strandat 231.858 kb on - strandat 231.930 kb on + strandat 231.930 kb on + strandat 231.930 kb on + strandat 231.931 kb on - strandat 231.932 kb on + strandat 231.932 kb on + strandat 231.933 kb on - strandat 231.937 kb on + strandat 231.938 kb on - strandat 231.999 kb on + strandat 232.005 kb on - strandat 232.005 kb on - strandat 232.005 kb on - strandat 232.048 kb on + strandat 232.055 kb on - strandat 232.105 kb on - strandat 232.111 kb on - strand, within BACOVA_02469at 232.111 kb on - strand, within BACOVA_02469at 232.114 kb on + strand, within BACOVA_02469at 232.114 kb on + strand, within BACOVA_02469at 232.115 kb on - strand, within BACOVA_02469at 232.115 kb on - strand, within BACOVA_02469at 232.115 kb on - strand, within BACOVA_02469at 232.115 kb on - strand, within BACOVA_02469at 232.116 kb on + strand, within BACOVA_02469at 232.118 kb on + strand, within BACOVA_02469at 232.119 kb on - strand, within BACOVA_02469at 232.206 kb on + strand, within BACOVA_02469at 232.265 kb on - strand, within BACOVA_02469at 232.312 kb on - strand, within BACOVA_02469at 232.424 kb on - strand, within BACOVA_02469at 232.481 kb on - strand, within BACOVA_02469at 232.583 kb on - strand, within BACOVA_02469at 232.583 kb on - strand, within BACOVA_02469at 232.606 kb on - strand, within BACOVA_02469at 232.643 kb on - strand, within BACOVA_02469at 232.688 kb on - strand, within BACOVA_02469at 232.688 kb on - strand, within BACOVA_02469at 232.692 kb on + strand, within BACOVA_02469at 232.719 kb on - strand, within BACOVA_02469at 232.719 kb on - strand, within BACOVA_02469at 232.725 kb on - strand, within BACOVA_02469at 232.727 kb on - strand, within BACOVA_02469at 232.727 kb on - strand, within BACOVA_02469at 232.727 kb on - strand, within BACOVA_02469at 232.729 kb on - strand, within BACOVA_02469at 232.748 kb on - strand, within BACOVA_02469at 232.750 kb on - strand, within BACOVA_02469at 232.750 kb on - strand, within BACOVA_02469at 232.796 kb on - strand, within BACOVA_02469at 232.841 kb on - strand, within BACOVA_02469at 232.841 kb on - strand, within BACOVA_02469at 232.849 kb on - strand, within BACOVA_02469at 232.856 kb on - strand, within BACOVA_02469

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Per-strain Table

Position Strand Gene LocusTag Fraction polygalacturonic 2.5 mg/ml (C)
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229,925 + -1.0
229,926 - +2.2
229,929 - +1.2
229,929 - +1.4
229,929 - -0.6
229,948 + +0.0
229,949 - +0.0
229,949 - -1.0
229,961 + +1.6
229,961 + +1.9
229,961 + +0.0
229,961 + -0.1
229,966 - -0.9
230,030 + BACOVA_02467 0.13 -0.6
230,031 - BACOVA_02467 0.13 +0.8
230,031 - BACOVA_02467 0.13 +2.0
230,033 - BACOVA_02467 0.13 +0.5
230,035 - BACOVA_02467 0.13 +0.2
230,035 - BACOVA_02467 0.13 +1.4
230,036 + BACOVA_02467 0.14 +0.3
230,036 + BACOVA_02467 0.14 -0.1
230,066 - BACOVA_02467 0.17 +1.0
230,066 - BACOVA_02467 0.17 -1.6
230,066 - BACOVA_02467 0.17 +1.2
230,228 + BACOVA_02467 0.33 +0.6
230,237 + BACOVA_02467 0.34 +0.4
230,249 + BACOVA_02467 0.35 +1.6
230,259 - BACOVA_02467 0.36 +0.5
230,266 + BACOVA_02467 0.37 +0.4
230,292 + BACOVA_02467 0.40 +2.0
230,293 - BACOVA_02467 0.40 +0.0
230,293 - BACOVA_02467 0.40 +1.3
230,300 - BACOVA_02467 0.40 -1.3
230,326 - BACOVA_02467 0.43 +0.1
230,333 + BACOVA_02467 0.44 +2.6
230,338 + BACOVA_02467 0.44 +0.4
230,339 - BACOVA_02467 0.44 +0.3
230,339 - BACOVA_02467 0.44 +0.4
230,355 - BACOVA_02467 0.46 -0.6
230,426 - BACOVA_02467 0.53 +1.9
230,426 - BACOVA_02467 0.53 +0.2
230,426 - BACOVA_02467 0.53 +1.0
230,426 - BACOVA_02467 0.53 +0.7
230,430 - BACOVA_02467 0.53 -1.0
230,430 - BACOVA_02467 0.53 +1.4
230,430 - BACOVA_02467 0.53 +0.5
230,431 + BACOVA_02467 0.54 +1.6
230,452 + BACOVA_02467 0.56 +2.4
230,484 - BACOVA_02467 0.59 +0.4
230,487 - BACOVA_02467 0.59 -0.3
230,549 - BACOVA_02467 0.66 -0.7
230,549 - BACOVA_02467 0.66 +1.6
230,598 - BACOVA_02467 0.71 +0.4
230,598 - BACOVA_02467 0.71 -0.6
230,599 + BACOVA_02467 0.71 +0.2
230,600 - BACOVA_02467 0.71 +1.2
230,620 - BACOVA_02467 0.73 +3.1
230,695 - BACOVA_02467 0.80 +0.6
230,709 - BACOVA_02467 0.82 +2.8
230,709 - BACOVA_02467 0.82 -0.3
230,772 - BACOVA_02467 0.88 +1.0
230,820 - +0.8
230,854 - +1.8
230,908 + +1.9
230,914 - +1.8
230,953 - +3.4
230,981 - -0.4
231,072 - BACOVA_02468 0.18 +0.9
231,078 - BACOVA_02468 0.18 +0.3
231,078 - BACOVA_02468 0.18 +0.0
231,120 - BACOVA_02468 0.22 +1.0
231,120 - BACOVA_02468 0.22 +2.3
231,140 - BACOVA_02468 0.24 -0.5
231,151 - BACOVA_02468 0.25 +1.0
231,161 - BACOVA_02468 0.26 +1.0
231,206 + BACOVA_02468 0.31 -0.8
231,219 + BACOVA_02468 0.32 +3.0
231,220 - BACOVA_02468 0.32 -1.5
231,220 - BACOVA_02468 0.32 +0.8
231,262 - BACOVA_02468 0.36 +0.5
231,323 - BACOVA_02468 0.42 -0.4
231,326 + BACOVA_02468 0.42 +1.0
231,353 - BACOVA_02468 0.45 -0.5
231,353 - BACOVA_02468 0.45 +0.2
231,379 - BACOVA_02468 0.47 +2.0
231,422 - BACOVA_02468 0.51 +0.8
231,429 - BACOVA_02468 0.52 +1.2
231,429 - BACOVA_02468 0.52 +0.2
231,437 - BACOVA_02468 0.53 +0.9
231,437 - BACOVA_02468 0.53 +1.0
231,437 - BACOVA_02468 0.53 +0.5
231,437 - BACOVA_02468 0.53 -0.5
231,467 + BACOVA_02468 0.56 +0.0
231,513 - BACOVA_02468 0.60 +0.9
231,584 + BACOVA_02468 0.67 +0.3
231,585 - BACOVA_02468 0.67 +0.4
231,591 - BACOVA_02468 0.68 +0.8
231,591 - BACOVA_02468 0.68 +1.5
231,613 - BACOVA_02468 0.70 +1.5
231,638 + BACOVA_02468 0.72 +0.0
231,638 + BACOVA_02468 0.72 +1.0
231,639 - BACOVA_02468 0.72 -0.2
231,643 - BACOVA_02468 0.73 +1.0
231,689 - BACOVA_02468 0.77 +0.9
231,735 - BACOVA_02468 0.82 +0.0
231,735 - BACOVA_02468 0.82 +2.0
231,819 - BACOVA_02468 0.90 -1.0
231,823 - +0.6
231,848 - +1.0
231,858 - -0.2
231,930 + +2.0
231,930 + +1.3
231,930 + +1.4
231,931 - +2.0
231,932 + +0.7
231,932 + +0.3
231,933 - +1.3
231,937 + +2.0
231,938 - -0.8
231,999 + +1.0
232,005 - +1.5
232,005 - -0.6
232,005 - +1.4
232,048 + +0.0
232,055 - -0.3
232,105 - +0.0
232,111 - BACOVA_02469 0.11 +1.2
232,111 - BACOVA_02469 0.11 +0.4
232,114 + BACOVA_02469 0.11 -0.5
232,114 + BACOVA_02469 0.11 +0.6
232,115 - BACOVA_02469 0.11 +1.9
232,115 - BACOVA_02469 0.11 +1.7
232,115 - BACOVA_02469 0.11 -0.3
232,115 - BACOVA_02469 0.11 +4.0
232,116 + BACOVA_02469 0.11 +0.0
232,118 + BACOVA_02469 0.11 +0.0
232,119 - BACOVA_02469 0.11 -0.4
232,206 + BACOVA_02469 0.20 +0.7
232,265 - BACOVA_02469 0.25 -2.5
232,312 - BACOVA_02469 0.30 +0.9
232,424 - BACOVA_02469 0.41 +0.5
232,481 - BACOVA_02469 0.46 +1.8
232,583 - BACOVA_02469 0.56 +1.5
232,583 - BACOVA_02469 0.56 +0.8
232,606 - BACOVA_02469 0.58 +1.5
232,643 - BACOVA_02469 0.61 +1.3
232,688 - BACOVA_02469 0.66 +1.5
232,688 - BACOVA_02469 0.66 -0.5
232,692 + BACOVA_02469 0.66 +0.5
232,719 - BACOVA_02469 0.69 -0.4
232,719 - BACOVA_02469 0.69 -2.5
232,725 - BACOVA_02469 0.69 -1.8
232,727 - BACOVA_02469 0.70 +0.9
232,727 - BACOVA_02469 0.70 +0.6
232,727 - BACOVA_02469 0.70 +1.0
232,729 - BACOVA_02469 0.70 +0.8
232,748 - BACOVA_02469 0.72 -1.3
232,750 - BACOVA_02469 0.72 +1.7
232,750 - BACOVA_02469 0.72 +0.5
232,796 - BACOVA_02469 0.76 -1.2
232,841 - BACOVA_02469 0.80 +0.5
232,841 - BACOVA_02469 0.80 +1.7
232,849 - BACOVA_02469 0.81 +1.0
232,856 - BACOVA_02469 0.82 +0.0

Or see this region's nucleotide sequence